IslandPathversion 1.0

IslandPath Analysis: Propionibacterium acnes KPA171202



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 60.05 STD DEV: 3.20
Propionibacterium acnes KPA171202, complete genome - 1..2560265
2297 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
989	 59.63	0	1086957..1087880	+	307	50842485	-	PPA1002	-	dihydroorotate dehydrogenase B, catalytic subunit
990	 61.60	0	1087906..1088616	+	236	50842486	-	PPA1003	-	orotidine 5'-phosphate decarboxylase
991	 60.98	0	1088644..1089294	+	216	50842487	-	PPA1004	-	orotate phosphoribosyltransferase
992	 63.44	+1	1089675..1090481	-	268	50842488	-	PPA1005	-	putative fructosamine kinase
993	 60.58	0	1090492..1091937	+	481	50842489	-	PPA1006	-	radical SAM superfamily protein
994	 55.61	-1	1092046..1092660	+	204	50842490	-	PPA1007	-	phosphatidylglycerophosphate synthase
995	 60.49	0	1092657..1093142	+	161	50842491	-	PPA1008	-	putative competence-damage inducible protein
996	 56.88	0	1093244..1093519	+	91	50842492	-	PPA1009	-	transcriptional regulator
997	 59.95	0	1093621..1094424	-	267	50842493	-	PPA1010	-	putative transcriptional regulatory protein
998	 61.67	0	1094790..1094969	+	59	50842494	-	PPA1011	-	hypothetical protein
999	 58.64	0	1095280..1096326	+	348	50842495	-	PPA1012	-	RecA protein
1000	 60.08	0	1096356..1096871	+	171	50842496	recX	PPA1013	-	recombination regulator RecX
1001	 59.67	0	1096975..1098603	+	542	50842497	-	PPA1014	-	hypothetical protein
1002	 59.44	0	1098644..1099543	-	299	50842498	-	PPA1015	-	putative aldose-1-epimerase
1003	 52.53	-2	1099707..1101248	+	513	50842499	-	PPA1016	-	putative C4-dicarboxylate anaerobic carrier DcuC
1004	 57.78	0	1101309..1102793	+	494	50842500	-	PPA1017	-	MiaB family protein
1005	 59.70	0	1102944..1103144	-	66	50842501	-	PPA1018	-	hypothetical protein
1006	 58.75	0	1103263..1104222	+	319	50842502	miaA	PPA1019	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1007	 60.10	0	1104227..1105048	+	273	50842503	dapF	PPA1020	-	diaminopimelate epimerase
1008	 57.16	0	1105133..1106584	+	483	50842504	-	PPA1021	-	GTP-binding protein
1009	 59.35	0	1106574..1108622	+	682	50842505	-	PPA1022	-	putative ATP-dependent helicase
1010	 58.22	0	1108732..1109406	-	224	50842506	-	PPA1023	-	LexA repressor
1011	 62.03	0	1109551..1110024	+	157	50842507	-	PPA1024	-	hypothetical protein
1012	 57.06	0	1110246..1110755	+	169	50842508	-	PPA1025	-	transcriptional regulator NrdR
1013	 57.13	0	1110837..1113689	+	950	50842509	-	PPA1026	-	vitamin B12-dependent ribonucleotide reductase
1014	 57.98	0	1113850..1114782	+	310	50842510	-	PPA1027	-	hypothetical protein
1015	 62.22	0	1114866..1115720	+	284	50842511	-	PPA1028	-	putative universal stress protein UspA
1016	 61.33	0	1116155..1120240	+	1361	50842512	-	PPA1029	-	ATP-dependent helicase HrpA
1017	 61.32	0	1120404..1121300	+	298	50842513	-	PPA1030	-	acyl-CoA thioesterase II
1018	 62.62	0	1121357..1122295	-	312	50842514	-	PPA1031	-	RNA polymerase principal sigma factor HrdD
1019	 58.91	0	1122642..1124162	+	506	50842515	-	PPA1032	-	RNA polymerase sigma factor
1020	 60.06	0	1124235..1126808	-	857	50842516	-	PPA1033	-	beta-mannosidase
1021	 60.10	0	1126914..1127522	+	202	50842517	-	PPA1034	-	transcriptional regulator
1022	 60.53	0	1127466..1128752	-	428	50842518	-	PPA1035	-	putative lipase
1023	 59.04	0	1128805..1129053	+	82	50842519	-	PPA1036	-	hypothetical protein
1024	 60.54	0	1129193..1129975	+	260	50842520	-	PPA1037	-	hypothetical protein
1025	 66.67	+2	1129953..1130246	+	97	50842521	-	PPA1038	-	hypothetical protein
1026	 60.31	0	1130324..1131598	+	424	50842522	-	PPA1039	-	putative aminooxidase
1027	 59.79	0	1131717..1132298	+	193	50842523	-	PPA1040	-	hypothetical protein
1028	 59.66	0	1132798..1134894	+	698	50842524	-	PPA1042	-	DNA topoisomerase IV subunit B
1029	 59.32	0	1135240..1136559	+	439	50842525	-	PPA1043	-	anaerobic C4-dicarboxylate transporter
1030	 58.04	0	1136612..1137955	+	447	50842526	-	PPA1044	-	major facilitator superfamily permease
1031	 60.99	0	1138134..1140668	-	844	50842527	-	PPA1045	-	DNA topoisomerase IV subunit A
1032	 59.63	0	1140732..1141826	-	364	50842528	-	PPA1046	-	hypothetical protein
1033	 59.46	0	1141873..1142469	+	198	50842529	-	PPA1047	-	hypothetical protein
1034	 60.20	0	1142466..1143593	+	375	50842530	-	PPA1048	-	type I phosphodiesterase / nucleotide pyrophosphatase
1035	 59.29	0	1143596..1144246	+	216	50842531	-	PPA1049	-	thymidine kinase
1036	 63.61	+1	1144304..1145383	-	359	50842532	-	PPA1050	-	hypothetical protein
1037	 56.57	-1	1145592..1145888	+	98	50842533	-	PPA1051	-	hypothetical protein
1038	 56.00	-1	1145958..1146257	-	99	50842534	-	PPA1052	-	hypothetical protein
1039	 58.38	0	1146299..1146829	+	176	50842535	-	PPA1053	-	hypothetical protein
1040	 61.66	0	1146822..1147280	+	152	50842536	-	PPA1054	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
1041	 59.59	0	1147324..1148058	+	244	50842537	-	PPA1055	-	hypothetical protein
1042	 59.29	0	1148061..1148453	+	130	50842538	-	PPA1056	-	hypothetical protein
1043	 58.33	0	1148534..1149193	-	219	50842539	-	PPA1057	-	Trk system potassium uptake protein
1044	 58.70	0	1149234..1149911	-	225	50842540	-	PPA1058	-	Trk system potassium uptake protein TrkA
1045	 56.94	0	1150080..1152104	+	674	50842541	-	PPA1059	-	amino acid permease
1046	 60.74	0	1152135..1153316	+	393	50842542	-	PPA1060	-	SAM-dependent methyltransferase related to tRNA
1047	 59.24	0	1153711..1156377	+	888	50842543	-	PPA1061	-	aconitate hydratase
1048	 58.43	0	1156678..1158582	+	634	50842544	-	PPA1062	-	1-deoxy-D-xylulose-5-phosphate synthase
1049	 61.74	0	1158598..1159836	-	412	50842545	-	PPA1063	-	ribonuclease D
1050	 59.47	0	1159833..1160402	-	189	50842546	-	PPA1064	-	hypothetical protein
1051	 58.61	0	1160521..1160967	-	148	50842547	-	PPA1065	-	peptide methionine sulfoxide reductase MsrB
1052	 62.92	0	1161158..1161931	-	257	50842548	-	PPA1066	-	hypothetical protein
1053	 60.39	0	1162195..1162863	-	222	50842549	-	PPA1067	-	hypothetical protein
1054	 58.90	0	1163084..1164460	+	458	50842550	tnaA	PPA1068	-	tryptophanase
1055	 57.25	0	1164465..1165919	+	484	50842551	-	PPA1069	-	aromatic amino acid transport protein
1056	 58.00	0	1168051..1169112	+	353	50842552	-	PPA1072	-	Zn-dependent alcohol dehydrogenase
1057	 60.55	0	1169261..1170601	+	446	50842553	-	PPA1073	-	putative two-component system sensor kinase
1058	 59.76	0	1171319..1173373	+	684	50842554	thrS	PPA1076	-	threonyl-tRNA synthetase
1059	 60.67	0	1172709..1173926	+	405	50842555	-	PPA1077	-	putative HIT family protein
1060	 60.42	0	1173919..1174542	+	207	50842556	-	PPA1078	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
1061	 58.41	0	1174588..1175241	+	217	50842557	-	PPA1079	-	putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyl-transferase
1062	 60.29	0	1175238..1176005	+	255	50842558	-	PPA1080	-	membrane associated protein
1063	 55.56	-1	1176048..1176380	+	110	50842559	-	PPA1081	-	small basic protein
1064	 56.44	-1	1176373..1177125	+	250	50842560	-	PPA1082	-	hypothetical protein
1065	 58.52	0	1177190..1177594	+	134	50842561	-	PPA1083	-	putative glycine cleavage system H protein
1066	 58.72	0	1177591..1178169	+	192	50842562	-	PPA1084	-	putative signal transduction protein GarA
1067	 57.14	0	1178169..1178882	+	237	50842563	-	PPA1085	-	regulatory protein
1068	 59.17	0	1178913..1179392	+	159	50842564	-	PPA1086	-	hypothetical protein
1069	 60.20	0	1179574..1180161	+	195	50842565	-	PPA1087	-	transcriptional regulator
1070	 56.40	-1	1180269..1181525	+	418	50842566	-	PPA1088	-	putative tRNA-processing ribonuclease
1071	 57.64	0	1181756..1182907	+	383	50842567	-	PPA1089	-	putative oxalate/formate-specific permease
1072	 60.17	0	1182988..1184187	-	399	50842568	-	PPA1090	-	pyrophosphate--fructose-6-phosphate 1-phosphotransferase
1073	 60.11	0	1184237..1184785	+	182	50842569	-	PPA1091	-	hypothetical protein
1074	 57.55	0	1184764..1185432	+	222	50842570	-	PPA1092	-	Sua5/YciO/YrdC domain-containing protein
1075	 60.26	0	1185480..1186181	+	233	50842571	-	PPA1093	-	5`-methylthioadenosine/S-adenosylhomocysteine nuclosidase
1076	 62.15	0	1186190..1187119	-	309	50842572	-	PPA1094	-	hypothetical protein
1077	 63.13	0	1187146..1187796	-	216	50842573	-	PPA1095	-	hypothetical protein
1078	 59.09	0	1187793..1189547	-	584	50842574	-	PPA1096	-	membrane spanning protein
1079	 54.49	-1	1189544..1189699	-	51	50842575	-	PPA1097	-	hypothetical protein
1080	 58.50	0	1189749..1190360	-	203	50842576	-	PPA1098	-	molecular chaperone
1081	 58.80	0	1190396..1191412	-	338	50842577	-	PPA1099	-	hypothetical protein
1082	 59.72	0	1191527..1192303	+	258	50842578	-	PPA1100	-	peptidyl-prolyl cis-trans isomerase B
1083	 58.61	0	1192307..1193125	-	272	50842579	-	PPA1101	-	putative esterase/lipase YbfF
1084	 58.27	0	1193412..1194209	+	265	50842580	-	PPA1102	-	hypothetical protein
1085	 60.99	0	1194273..1195610	-	445	50842581	-	PPA1103	-	putative adhesion/surface protein
1086	 58.61	0	1195744..1196202	-	152	50842582	-	PPA1104	-	methylmalonyl CoA epimerase
1087	 55.91	-1	1196568..1196846	+	92	50842583	-	PPA2380	-	hypothetical protein
1088	 59.31	0	1196836..1198467	-	543	50842584	-	PPA1105	-	phosphoglucomutase
60.05	MEAN

3.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.