IslandPath Analysis: Polynucleobacter sp. QLW-P1DMWA-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.00   STD DEV: 2.74
Polynucleobacter sp. QLW-P1DMWA-1, complete genome - 1..2159490
2077 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1978	 42.98	0	2058656..2059795	-	379	145590167	-	Pnuc_1989	-	RND family efflux transporter MFP subunit
1979	 46.56	0	2059965..2061506	-	513	145590168	-	Pnuc_1990	-	RND efflux system outer membrane lipoprotein
1980	 47.03	0	2061692..2063524	-	610	145590169	-	Pnuc_1991	-	glucosamine--fructose-6-phosphate aminotransferase, isomerizing
1981	 45.36	0	2063524..2065044	-	506	145590170	-	Pnuc_1992	-	UDP-N-acetylglucosamine pyrophosphorylase
1982	 44.77	0	2065041..2065949	-	302	145590171	-	Pnuc_1993	-	PP-loop domain-containing protein
1983	 44.44	0	2065988..2066383	-	131	145590172	-	Pnuc_1994	-	dihydroneopterin aldolase
1984	 46.11	0	2066411..2067232	-	273	145590173	-	Pnuc_1995	-	short-chain dehydrogenase/reductase SDR
1985	 46.46	0	2067258..2068445	+	395	145590174	-	Pnuc_1996	-	hypothetical protein
1986	 45.98	0	2068449..2069579	-	376	145590175	-	Pnuc_1997	-	polynucleotide adenylyltransferase region
1987	 44.33	0	2069579..2070487	-	302	145590176	-	Pnuc_1998	-	NAD-dependent epimerase/dehydratase
1988	 44.30	0	2070516..2072402	-	628	145590177	-	Pnuc_1999	-	lytic transglycosylase, catalytic
1989	 47.37	0	2072548..2073174	+	208	145590178	-	Pnuc_2000	-	5-formyltetrahydrofolate cyclo-ligase
1990	 46.69	0	2073203..2074033	-	276	145590179	-	Pnuc_2001	-	5,10-methylenetetrahydrofolate reductase
1991	 44.47	0	2074071..2075516	-	481	145590180	-	Pnuc_2002	-	S-adenosyl-L-homocysteine hydrolase
1992	 46.36	0	2075751..2076917	-	388	145590181	-	Pnuc_2003	-	methionine adenosyltransferase
1993	 49.05	+1	2077036..2077983	+	315	145590182	-	Pnuc_2004	-	lipid A biosynthesis acyltransferase
1994	 44.78	0	2078001..2078900	+	299	145590183	-	Pnuc_2005	-	lipid A biosynthesis acyltransferase
1995	 47.25	0	2078959..2079813	+	284	145590184	-	Pnuc_2006	-	diaminopimelate epimerase
1996	 46.19	0	2079832..2080500	-	222	145590185	pyrE	Pnuc_2007	-	orotate phosphoribosyltransferase
1997	 46.36	0	2080509..2081291	+	260	145590186	-	Pnuc_2008	-	exodeoxyribonuclease III Xth
1998	 45.75	0	2081288..2082535	-	415	145590187	-	Pnuc_2009	-	major facilitator transporter
1999	 44.95	0	2082606..2083199	-	197	145590188	-	Pnuc_2010	-	methionine biosynthesis protein MetW
2000	 45.88	0	2083196..2084335	-	379	145590189	metX	Pnuc_2011	-	homoserine O-acetyltransferase
2001	 48.08	+1	2084332..2084982	-	216	145590190	slmA	Pnuc_2012	-	nucleoid occlusion protein
2002	 45.29	0	2085001..2085903	-	300	145590191	-	Pnuc_2013	-	acetylglutamate kinase
2003	 44.58	0	2085917..2086405	-	162	145590192	-	Pnuc_2014	-	TraR/DksA family transcriptional regulator
2004	 45.67	0	2086518..2087579	-	353	145590193	-	Pnuc_2015	-	cobalamin synthesis protein, P47K
2005	 49.20	+1	2087649..2088650	-	333	145590194	-	Pnuc_2016	-	phage integrase family protein
2006	 48.44	+1	2088631..2089305	-	224	145590195	-	Pnuc_2017	-	hypothetical protein
2007	 47.35	0	2089333..2090802	-	489	145590196	-	Pnuc_2018	-	glutamyl-tRNA(Gln) amidotransferase, B subunit
2008	 48.35	+1	2090802..2092319	-	505	145590197	-	Pnuc_2019	-	glutamyl-tRNA(Gln) amidotransferase, A subunit
2009	 50.00	+1	2092316..2092609	-	97	145590198	-	Pnuc_2020	-	glutamyl-tRNA(Gln) amidotransferase, C subunit
2010	 48.47	+1	2092671..2093714	+	347	145590199	-	Pnuc_2021	-	cell shape determining protein MreB
2011	 47.76	+1	2093739..2094674	+	311	145590200	-	Pnuc_2022	-	rod shape-determining protein MreC
2012	 48.00	+1	2094671..2095195	+	174	145590201	-	Pnuc_2023	-	rod shape-determining protein MreD
2013	 44.23	0	2095204..2097111	+	635	145590202	-	Pnuc_2024	-	peptidoglycan glycosyltransferase
2014	 43.40	0	2097093..2098244	+	383	145590203	-	Pnuc_2025	-	rod shape-determining protein RodA
2015	 42.68	0	2098320..2098640	-	106	145590204	-	Pnuc_2026	-	histone family protein DNA-binding protein
2016	 41.26	-1	2098718..2099083	-	121	145590205	-	Pnuc_2027	-	hypothetical protein
2017	 42.62	0	2099222..2100136	+	304	145590206	-	Pnuc_2028	-	aspartyl/asparaginyl beta-hydroxylase
2018	 43.43	0	2100152..2100448	-	98	145590207	-	Pnuc_2029	-	hypothetical protein
2019	 45.05	0	2100471..2101136	+	221	145590208	-	Pnuc_2030	-	carbonate dehydratase
2020	 41.56	-1	2101143..2102042	+	299	145590209	-	Pnuc_2031	-	lipid A biosynthesis acyltransferase
2021	 44.89	0	2102068..2102820	+	250	145590210	-	Pnuc_2032	-	metallophosphoesterase
2022	 47.78	+1	2102828..2104246	+	472	145590211	-	Pnuc_2033	-	protein kinase
2023	 43.19	0	2104253..2105581	-	442	145590212	-	Pnuc_2034	-	C4-dicarboxylate transporter DctA
2024	 47.15	0	2105683..2106420	+	245	145590213	-	Pnuc_2035	-	pseudouridine synthase
2025	 46.65	0	2106584..2108107	+	507	145590214	-	Pnuc_2036	-	peptide chain release factor 3
2026	 41.03	-1	2108386..2108619	-	77	145590215	-	Pnuc_2037	-	hypothetical protein
2027	 44.70	0	2109040..2109435	+	131	145590216	-	Pnuc_2038	-	GCN5-related N-acetyltransferase
2028	 47.60	0	2109457..2110101	+	214	145590217	-	Pnuc_2039	-	phosphoglycerate mutase
2029	 42.02	-1	2110136..2110906	+	256	145590218	-	Pnuc_2040	-	MltA-interacting MipA family protein
2030	 45.69	0	2110939..2111901	-	320	145590219	-	Pnuc_2041	-	hypothetical protein
2031	 42.28	0	2112001..2112246	-	81	145590220	-	Pnuc_2042	-	hypothetical protein
2032	 44.16	0	2112432..2113475	-	347	145590221	-	Pnuc_2043	-	alpha/beta hydrolase fold
2033	 47.12	0	2113678..2115831	+	717	145590222	-	Pnuc_2044	-	catalase/peroxidase HPI
2034	 44.86	0	2115918..2116316	-	132	145590223	-	Pnuc_2045	-	glutathione S-transfersae-related protein
2035	 42.54	0	2116327..2117010	-	227	145590224	-	Pnuc_2046	-	haloacid dehalogenase, type II
2036	 38.89	-2	2117081..2117440	-	119	145590225	-	Pnuc_2047	-	hypothetical protein
2037	 43.78	0	2117549..2117998	-	149	145590226	-	Pnuc_2048	-	hypothetical protein
2038	 40.06	-1	2118184..2118495	-	103	145590227	-	Pnuc_2049	-	hypothetical protein
2039	 48.69	+1	2118559..2119209	-	216	145590228	-	Pnuc_2050	-	hypothetical protein
2040	 40.94	-1	2119323..2120084	-	253	145590229	-	Pnuc_2051	-	hypothetical protein
2041	 39.09	-2	2120479..2121051	-	190	145590230	-	Pnuc_2052	-	cyclase/dehydrase
2042	 44.75	0	2121143..2122132	-	329	145590231	-	Pnuc_2053	-	catalase domain-containing protein
2043	 48.10	+1	2122152..2122571	-	139	145590232	-	Pnuc_2054	-	CHRD domain-containing protein
2044	 41.83	-1	2122715..2123608	-	297	145590233	-	Pnuc_2055	-	LysR family transcriptional regulator
2045	 45.83	0	2123693..2124652	+	319	145590234	-	Pnuc_2056	-	hypothetical protein
2046	 44.68	0	2124670..2125524	+	284	145590235	-	Pnuc_2057	-	hypothetical protein
2047	 43.93	0	2125656..2126240	-	194	145590236	-	Pnuc_2058	-	uracil-DNA glycosylase superfamily protein
2048	 40.14	-1	2126255..2127121	-	288	145590237	-	Pnuc_2059	-	K+ channel inward rectifier domain-containing protein
2049	 43.90	0	2127255..2128361	-	368	145590238	-	Pnuc_2060	-	patatin
2050	 44.06	0	2130137..2130574	-	145	145590239	-	Pnuc_2061	-	hypothetical protein
2051	 34.62	-2	2131313..2132089	+	258	145590240	-	Pnuc_2062	-	hypothetical protein
2052	 47.44	0	2132259..2132825	+	188	145590241	-	Pnuc_2063	-	phage integrase family protein
2053	 39.34	-2	2132858..2133739	-	293	145590242	-	Pnuc_2064	-	hypothetical protein
2054	 43.30	0	2133881..2134663	+	260	145590243	-	Pnuc_2065	-	hypothetical protein
2055	 40.97	-1	2134682..2135401	+	239	145590244	-	Pnuc_2066	-	AAA ATPase
2056	 44.24	0	2135629..2136903	-	424	145590245	-	Pnuc_2067	-	phage integrase family protein
2057	 42.11	-1	2137005..2137289	-	94	145590246	-	Pnuc_2068	-	hypothetical protein
2058	 45.56	0	2137349..2137708	-	119	145590247	-	Pnuc_2069	-	hypothetical protein
2059	 41.53	-1	2137871..2138224	-	117	145590248	-	Pnuc_2070	-	hypothetical protein
2060	 39.80	-1	2138360..2138869	+	169	145590249	-	Pnuc_2071	-	hypothetical protein
2061	 43.39	0	2139124..2139819	-	231	145590250	-	Pnuc_2072	-	hypothetical protein
2062	 45.53	0	2140109..2142313	-	734	145590251	-	Pnuc_2073	-	hypothetical protein
2063	 46.35	0	2142370..2143053	-	227	145590252	-	Pnuc_2074	-	two component Fis family transcriptional regulator
2064	 45.01	0	2143056..2145368	-	770	145590253	-	Pnuc_2075	-	integral membrane sensor signal transduction histidine kinase
2065	 44.16	0	2145365..2145946	-	193	145590254	-	Pnuc_2076	-	putative periplasmic ligand-binding sensor protein
2066	 46.32	0	2145943..2147259	-	438	145590255	-	Pnuc_2077	-	sun protein
2067	 47.75	+1	2147285..2148283	-	332	145590256	-	Pnuc_2078	-	methionyl-tRNA formyltransferase
2068	 44.38	0	2148293..2148808	-	171	145590257	-	Pnuc_2079	-	peptide deformylase
2069	 49.28	+1	2148880..2149569	+	229	145590258	-	Pnuc_2080	-	DNA protecting protein DprA
2070	 46.94	0	2149816..2152446	+	876	145590259	-	Pnuc_2081	-	DNA topoisomerase III
2071	 49.92	+1	2152272..2153507	-	411	145590260	-	Pnuc_2082	-	FAD dependent oxidoreductase
2072	 47.00	0	2153547..2155412	-	621	145590261	-	Pnuc_2083	-	phosphoenolpyruvate carboxykinase
2073	 48.25	+1	2155503..2156876	-	457	145590262	-	Pnuc_2084	-	tRNA modification GTPase TrmE
2074	 44.38	0	2156916..2158589	-	557	145590263	-	Pnuc_2085	-	60 kDa inner membrane insertion protein
2075	 44.87	0	2158605..2158838	-	77	145590264	-	Pnuc_2086	-	hypothetical protein
2076	 45.28	0	2158840..2159157	-	105	145590265	-	Pnuc_2087	-	ribonuclease P protein component
2077	 48.15	+1	2159166..2159300	-	44	145590266	rpmH	Pnuc_2088	-	50S ribosomal protein L34
45.00	MEAN

2.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.