IslandPathversion 1.0

IslandPath Analysis: Polynucleobacter sp. QLW-P1DMWA-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.00 STD DEV: 2.74
Polynucleobacter sp. QLW-P1DMWA-1, complete genome - 1..2159490
2077 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1797	 45.70	0	1885173..1885463	-	96	145589986	-	Pnuc_1806	-	chaperonin Cpn10
1798	 42.94	0	1885779..1886621	+	280	145589987	-	Pnuc_1807	-	putative diguanylate phosphodiesterase
1799	 40.71	-1	1886621..1887244	+	207	145589988	-	Pnuc_1808	-	two component LuxR family transcriptional regulator
1800	 40.81	-1	1887252..1889672	+	806	145589989	-	Pnuc_1809	-	histidine kinase
1801	 44.75	0	1889721..1891262	+	513	145589990	-	Pnuc_1810	-	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
1802	 46.74	0	1891208..1892296	-	362	145589991	-	Pnuc_1811	-	Sua5/YciO/YrdC/YwlC family protein
1803	 46.58	0	1892299..1893483	-	394	145589992	-	Pnuc_1812	-	phosphoribosylaminoimidazole carboxylase, ATPase subunit
1804	 47.27	0	1893488..1893982	-	164	145589993	-	Pnuc_1813	-	phosphoribosylaminoimidazole carboxylase, catalytic subunit
1805	 44.93	0	1894023..1894919	-	298	145589994	-	Pnuc_1814	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
1806	 45.35	0	1894927..1895991	-	354	145589995	-	Pnuc_1815	-	fructose-1,6-bisphosphate aldolase
1807	 46.90	0	1896032..1897468	-	478	145589996	-	Pnuc_1816	-	pyruvate kinase
1808	 47.85	+1	1897471..1898682	-	403	145589997	-	Pnuc_1817	-	phosphoglycerate kinase
1809	 44.26	0	1898876..1899799	+	307	145589998	-	Pnuc_1818	-	branched-chain amino acid aminotransferase
1810	 48.15	+1	1899824..1900012	+	62	145589999	-	Pnuc_1819	-	hypothetical protein
1811	 42.93	0	1900059..1901090	+	343	145590000	-	Pnuc_1820	-	lipopolysaccharide heptosyltransferase II
1812	 46.21	0	1901113..1901547	+	144	145590001	-	Pnuc_1821	-	hypothetical protein
1813	 43.96	0	1901557..1902177	+	206	145590002	-	Pnuc_1822	-	hypothetical protein
1814	 46.18	0	1902179..1903867	-	562	145590003	-	Pnuc_1823	-	peptidase M48, Ste24p
1815	 47.38	0	1903900..1904376	+	158	145590004	-	Pnuc_1824	-	molybdenum cofactor biosynthesis protein C
1816	 41.67	-1	1904392..1905963	-	523	145590005	-	Pnuc_1825	-	TPR repeat-containing protein
1817	 36.51	-2	1906109..1907083	+	324	145590006	-	Pnuc_1826	-	glycosyl transferase, group 1
1818	 39.28	-2	1907098..1909383	-	761	145590007	-	Pnuc_1827	-	TPR repeat-containing protein
1819	 45.42	0	1909463..1909975	-	170	145590008	-	Pnuc_1828	-	fimbrial protein pilin
1820	 43.60	0	1910093..1910803	-	236	145590009	-	Pnuc_1829	-	integral membrane protein TerC
1821	 45.53	0	1910891..1911784	-	297	145590010	-	Pnuc_1830	-	succinyl-CoA synthetase subunit alpha
1822	 43.50	0	1911800..1912969	-	389	145590011	sucC	Pnuc_1831	-	succinyl-CoA synthetase subunit beta
1823	 51.25	+2	1913157..1913675	-	172	145590012	-	Pnuc_1832	-	regulatory protein RecX
1824	 44.60	0	1913680..1914771	-	363	145590013	-	Pnuc_1833	-	recA protein
1825	 47.75	+1	1914890..1915423	-	177	145590014	-	Pnuc_1834	-	hypothetical protein
1826	 38.72	-2	1915705..1916781	+	358	145590015	-	Pnuc_1835	-	hypothetical protein
1827	 34.13	-2	1916778..1917407	+	209	145590016	-	Pnuc_1836	-	hypothetical protein
1828	 37.20	-2	1917410..1917745	+	111	145590017	-	Pnuc_1837	-	hypothetical protein
1829	 32.84	-2	1917738..1918142	+	134	145590018	-	Pnuc_1838	-	hypothetical protein
1830	 42.44	0	1918139..1918720	-	193	145590019	-	Pnuc_1839	-	phage integrase family protein
1831	 38.97	-2	1919113..1919307	+	64	145590020	-	Pnuc_1840	-	hypothetical protein
1832	 32.92	-2	1919319..1919801	+	160	145590021	-	Pnuc_1841	-	hypothetical protein
1833	 28.82	-2	1919831..1920406	-	191	145590022	-	Pnuc_1842	-	hypothetical protein
1834	 37.02	-2	1920553..1921095	-	180	145590023	-	Pnuc_1843	-	hypothetical protein
1835	 37.58	-2	1921219..1921665	+	148	145590024	-	Pnuc_1844	-	hypothetical protein
1836	 39.42	-2	1922198..1923610	-	470	145590025	-	Pnuc_1845	-	phage integrase family protein
1837	 39.81	-1	1923942..1924373	-	143	145590026	-	Pnuc_1846	-	hypothetical protein
1838	 39.56	-1	1924430..1924750	+	106	145590027	-	Pnuc_1847	-	secreted protein
1839	 41.34	-1	1924769..1925380	+	203	145590028	-	Pnuc_1848	-	MOSC domain-containing protein
1840	 46.44	0	1925434..1927104	-	556	145590029	-	Pnuc_1849	-	major facilitator transporter
1841	 44.76	0	1927385..1928014	-	209	145590030	-	Pnuc_1850	-	hypothetical protein
1842	 43.29	0	1928104..1928796	+	230	145590031	-	Pnuc_1851	-	maleylacetoacetate isomerase
1843	 45.90	0	1928818..1929342	-	174	145590032	-	Pnuc_1852	-	hexapaptide repeat-containing transferase
1844	 44.90	0	1929593..1929955	+	120	145590033	-	Pnuc_1854	-	hypothetical protein
1845	 46.18	0	1930000..1930287	+	95	145590034	-	Pnuc_1855	-	hypothetical protein
1846	 39.49	-2	1930332..1930721	-	129	145590035	-	Pnuc_1856	-	OsmC family protein
1847	 46.47	0	1930759..1931169	-	136	145590036	-	Pnuc_1857	-	rhodanese domain-containing protein
1848	 43.86	0	1931228..1932490	+	420	145590037	-	Pnuc_1858	-	hypothetical protein
1849	 44.84	0	1932558..1933904	+	448	145590038	-	Pnuc_1859	-	tRNA-i(6)A37 thiotransferase enzyme MiaB
1850	 39.32	-2	1933894..1934361	+	155	145590039	-	Pnuc_1860	-	hypothetical protein
1851	 46.67	0	1934416..1935255	+	279	145590040	-	Pnuc_1861	-	CBS domain-containing protein
1852	 43.25	0	1935264..1936775	+	503	145590041	-	Pnuc_1862	-	apolipoprotein N-acyltransferase
1853	 44.97	0	1936836..1937720	+	294	145590042	glyQ	Pnuc_1863	-	glycyl-tRNA synthetase subunit alpha
1854	 44.93	0	1937752..1939890	+	712	145590043	glyS	Pnuc_1864	-	glycyl-tRNA synthetase subunit beta
1855	 44.85	0	1939887..1940459	+	190	145590044	-	Pnuc_1865	-	histidinol-phosphate phosphatase family protein
1856	 42.99	0	1940467..1941201	+	244	145590045	-	Pnuc_1866	-	phospholipid/glycerol acyltransferase
1857	 43.11	0	1941219..1941995	-	258	145590046	-	Pnuc_1867	-	dimethyladenosine transferase
1858	 44.25	0	1941999..1943006	-	335	145590047	-	Pnuc_1868	-	4-hydroxythreonine-4-phosphate dehydrogenase
1859	 43.78	0	1942981..1944435	-	484	145590048	-	Pnuc_1869	-	PpiC-type peptidyl-prolyl cis-trans isomerase
1860	 46.02	0	1944435..1946885	-	816	145590049	-	Pnuc_1870	-	organic solvent tolerance protein
1861	 42.42	0	1946988..1947989	+	333	145590050	-	Pnuc_1871	-	aminoglycoside phosphotransferase
1862	 45.15	0	1948003..1948713	+	236	145590051	-	Pnuc_1872	-	nucleotidyl transferase
1863	 45.61	0	1948700..1950076	+	458	145590052	-	Pnuc_1873	-	peptidase M24
1864	 45.34	0	1950092..1951249	+	385	145590053	-	Pnuc_1874	-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
1865	 46.51	0	1951402..1952418	+	338	145590054	-	Pnuc_1875	-	nifR3 family TIM-barrel protein
1866	 38.33	-2	1952469..1952708	+	79	145590055	-	Pnuc_1876	-	Fis family transcriptional regulator
1867	 45.86	0	1952753..1954333	+	526	145590056	purH	Pnuc_1877	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1868	 51.64	+2	1954340..1954858	+	172	145590057	-	Pnuc_1878	-	crossover junction endodeoxyribonuclease RuvC
1869	 46.39	0	1954888..1955469	+	193	145590058	-	Pnuc_1879	-	Holliday junction DNA helicase RuvA
1870	 48.09	+1	1955487..1956557	+	356	145590059	ruvB	Pnuc_1880	-	Holliday junction DNA helicase B
1871	 46.15	0	1956573..1957805	-	410	145590060	-	Pnuc_1881	-	tyrosyl-tRNA synthetase
1872	 45.92	0	1957882..1959009	+	375	145590061	anmK	Pnuc_1882	-	anhydro-N-acetylmuramic acid kinase
1873	 44.80	0	1959022..1959396	-	124	145590062	-	Pnuc_1883	-	iron-sulfur cluster assembly accessory protein
1874	 47.12	0	1959465..1960523	-	352	145590063	argC	Pnuc_1884	-	N-acetyl-gamma-glutamyl-phosphate reductase
1875	 49.00	+1	1960636..1961037	-	133	145590064	-	Pnuc_1885	-	ribosomal protein S9
1876	 47.55	0	1961047..1961475	-	142	145590065	rplM	Pnuc_1886	-	50S ribosomal protein L13
1877	 48.46	+1	1961885..1962307	+	140	145590066	-	Pnuc_1887	-	OsmC family protein
1878	 44.38	0	1962672..1963730	-	352	145590067	-	Pnuc_1888	-	dihydroorotase
1879	 45.75	0	1963732..1965084	-	450	145590068	-	Pnuc_1889	-	hydroxypyruvate reductase
1880	 44.96	0	1965094..1966917	-	607	145590069	-	Pnuc_1890	-	ABC transporter related
1881	 41.83	-1	1966927..1967385	-	152	145590070	-	Pnuc_1891	-	NUDIX hydrolase
1882	 46.28	0	1967417..1969216	-	599	145590071	-	Pnuc_1892	-	aspartyl-tRNA synthetase
1883	 44.04	0	1969233..1969886	-	217	145590072	-	Pnuc_1893	-	hypothetical protein
1884	 46.12	0	1969939..1971525	-	528	145590073	-	Pnuc_1894	-	2-polyprenylphenol 6-hydroxylase
1885	 44.28	0	1971529..1972149	-	206	145590074	-	Pnuc_1895	-	hypothetical protein
1886	 48.79	+1	1972203..1973114	-	303	145590075	-	Pnuc_1896	-	import inner membrane translocase, subunit Tim44
1887	 45.56	0	1973182..1973925	-	247	145590076	-	Pnuc_1897	-	ubiquinone/menaquinone biosynthesis methyltransferase
1888	 42.89	0	1973925..1974311	-	128	145590077	-	Pnuc_1898	-	hypothetical protein
1889	 45.91	0	1974311..1978150	-	1279	145590078	-	Pnuc_1899	-	FAD linked oxidase domain-containing protein
1890	 46.09	0	1978285..1979805	+	506	145590079	-	Pnuc_1900	-	threonine dehydratase, biosynthetic
1891	 47.06	0	1979817..1980734	+	305	145590080	-	Pnuc_1901	-	5-nucleotidase
1892	 46.26	0	1980752..1981579	+	275	145590081	queF	Pnuc_1902	-	7-cyano-7-deazaguanine reductase
1893	 47.15	0	1981652..1982107	-	151	145590082	-	Pnuc_1903	-	single-strand binding protein
1894	 46.67	0	1982189..1983373	-	394	145590083	-	Pnuc_1904	-	major facilitator transporter
1895	 45.59	0	1983411..1986299	+	962	145590084	-	Pnuc_1905	-	excinuclease ABC, A subunit
1896	 46.29	0	1986328..1988310	-	660	145590085	-	Pnuc_1906	-	potassium efflux system protein
45.00	MEAN

2.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.