IslandPathversion 1.0

IslandPath Analysis: Polynucleobacter sp. QLW-P1DMWA-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.00 STD DEV: 2.74
Polynucleobacter sp. QLW-P1DMWA-1, complete genome - 1..2159490
2077 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1661	 43.89	0	1735229..1737019	-	596	145589850	-	Pnuc_1670	-	potassium-transporting ATPase subunit A
1662	 41.99	-1	1737953..1738333	-	126	145589851	-	Pnuc_1671	-	hypothetical protein
1663	 42.51	0	1738345..1738671	-	108	145589852	-	Pnuc_1672	-	heavy metal transport/detoxification protein
1664	 45.70	0	1738694..1739332	-	212	145589853	-	Pnuc_1673	-	hypothetical protein
1665	 43.62	0	1739329..1739610	-	93	145589854	-	Pnuc_1674	-	hypothetical protein
1666	 44.73	0	1739682..1740032	-	116	145589855	-	Pnuc_1675	-	hypothetical protein
1667	 46.00	0	1740201..1740713	-	170	145589856	-	Pnuc_1676	-	hypothetical protein
1668	 45.71	0	1740755..1742935	-	726	145589857	-	Pnuc_1677	-	heavy metal translocating P-type ATPase
1669	 42.36	0	1743034..1743432	+	132	145589858	-	Pnuc_1678	-	MerR family transcriptional regulator
1670	 43.98	0	1743589..1744818	-	409	145589859	-	Pnuc_1679	-	hypothetical protein
1671	 44.61	0	1744815..1747943	-	1042	145589860	-	Pnuc_1680	-	CzcA family heavy metal efflux protein
1672	 46.34	0	1747943..1749049	-	368	145589861	-	Pnuc_1681	-	RND family efflux transporter MFP subunit
1673	 44.36	0	1749113..1749520	-	135	145589862	-	Pnuc_1682	-	hypothetical protein
1674	 43.21	0	1749798..1750202	-	134	145589863	-	Pnuc_1683	-	hypothetical protein
1675	 43.12	0	1750288..1750614	-	108	145589864	-	Pnuc_1684	-	hypothetical protein
1676	 42.70	0	1750636..1751361	-	241	145589865	-	Pnuc_1685	-	hypothetical protein
1677	 46.37	0	1751425..1752444	-	339	145589866	-	Pnuc_1686	-	hypothetical protein
1678	 44.00	0	1752469..1752843	-	124	145589867	-	Pnuc_1687	-	hypothetical protein
1679	 45.32	0	1753208..1754125	+	305	145589868	-	Pnuc_1688	-	hypothetical protein
1680	 46.42	0	1754143..1754715	-	190	145589869	-	Pnuc_1689	-	phage integrase family protein
1681	 42.53	0	1754987..1755508	-	173	145589870	-	Pnuc_1690	-	hypothetical protein
1682	 44.82	0	1755887..1756330	+	147	145589871	-	Pnuc_1691	-	hypothetical protein
1683	 45.18	0	1756539..1756901	+	120	145589872	-	Pnuc_1692	-	hypothetical protein
1684	 50.54	+2	1756948..1757412	+	154	145589873	-	Pnuc_1693	-	hypothetical protein
1685	 45.73	0	1757500..1758903	-	467	145589874	-	Pnuc_1694	-	phage integrase family protein
1686	 41.04	-1	1758958..1759476	-	172	145589875	-	Pnuc_1695	-	hypothetical protein
1687	 34.99	-2	1759490..1761415	-	641	145589876	-	Pnuc_1696	-	hypothetical protein
1688	 37.83	-2	1761551..1762261	-	236	145589877	-	Pnuc_1697	-	hypothetical protein
1689	 45.51	0	1762904..1764940	-	678	145589878	-	Pnuc_1698	-	RNA polymerase, sigma 70 subunit, RpoD
1690	 48.81	+1	1765674..1767611	-	645	145589879	-	Pnuc_1699	-	DNA primase
1691	 45.64	0	1767639..1768085	-	148	145589880	-	Pnuc_1700	-	GatB/Yqey domain-containing protein
1692	 51.17	+2	1768202..1768414	-	70	145589881	-	Pnuc_1701	-	ribosomal protein S21
1693	 46.93	0	1768493..1769566	+	357	145589882	-	Pnuc_1702	-	metalloendopeptidase glycoprotease family
1694	 46.62	0	1769602..1770429	-	275	145589883	-	Pnuc_1703	-	hypothetical protein
1695	 47.48	0	1770455..1772356	-	633	145589884	-	Pnuc_1704	-	deoxyxylulose-5-phosphate synthase
1696	 47.43	0	1772373..1773287	-	304	145589885	-	Pnuc_1705	-	polyprenyl synthetase
1697	 44.02	0	1773288..1773521	-	77	145589886	-	Pnuc_1706	-	exonuclease VII, small subunit
1698	 47.34	0	1773684..1774790	+	368	145589887	-	Pnuc_1707	-	Rieske (2Fe-2S) domain-containing protein
1699	 47.05	0	1774843..1775673	+	276	145589888	-	Pnuc_1708	-	3-mercaptopyruvate sulfurtransferase
1700	 46.64	0	1775670..1776443	-	257	145589889	-	Pnuc_1709	-	zinc/iron permease
1701	 50.23	+1	1776448..1777323	-	291	145589890	-	Pnuc_1710	-	carboxymethylenebutenolidase
1702	 46.93	0	1777339..1780170	-	943	145589891	-	Pnuc_1711	-	DNA polymerase I
1703	 47.58	0	1780253..1780666	+	137	145589892	-	Pnuc_1712	-	putative transmembrane protein
1704	 46.11	0	1780706..1781683	+	325	145589893	-	Pnuc_1713	-	homoserine kinase
1705	 44.14	0	1781680..1782456	+	258	145589894	-	Pnuc_1714	-	putative transmembrane protein
1706	 48.05	+1	1782453..1784816	-	787	145589895	-	Pnuc_1715	-	UvrD/REP helicase
1707	 47.16	0	1784841..1787732	+	963	145589896	-	Pnuc_1716	-	valyl-tRNA synthetase
1708	 45.34	0	1787764..1788654	+	296	145589897	-	Pnuc_1717	-	UTP-glucose-1-phosphate uridylyltransferase GalU
1709	 42.28	0	1788672..1788917	-	81	145589898	-	Pnuc_1718	-	SirA family protein
1710	 47.12	0	1788914..1791538	-	874	145589899	-	Pnuc_1719	-	alanyl-tRNA synthetase
1711	 43.14	0	1791662..1792120	+	152	145589900	-	Pnuc_1720	-	hypothetical protein
1712	 47.57	0	1792141..1793643	+	500	145589901	-	Pnuc_1721	-	hypothetical protein
1713	 46.93	0	1793728..1795500	+	590	145589902	-	Pnuc_1722	-	glutaminyl-tRNA synthetase
1714	 49.05	+1	1795481..1796377	-	298	145589903	-	Pnuc_1723	-	NAD-dependent epimerase/dehydratase
1715	 48.23	+1	1796399..1797445	+	348	145589904	-	Pnuc_1724	-	CDP-6-deoxy-delta-3,4-glucoseen reductase
1716	 46.40	0	1797507..1798700	+	397	145589905	argD	Pnuc_1725	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
1717	 46.50	0	1798723..1799436	-	237	145589906	-	Pnuc_1726	-	ABC transporter related
1718	 47.42	0	1799436..1800209	-	257	145589907	-	Pnuc_1727	-	ABC transporter related
1719	 45.05	0	1800206..1801297	-	363	145589908	-	Pnuc_1728	-	inner-membrane translocator
1720	 45.62	0	1801290..1802225	-	311	145589909	-	Pnuc_1729	-	inner-membrane translocator
1721	 44.50	0	1802293..1803474	-	393	145589910	-	Pnuc_1730	-	extracellular ligand-binding receptor
1722	 46.15	0	1803504..1804439	-	311	145589911	-	Pnuc_1731	-	hydroxymethylbutenyl pyrophosphate reductase
1723	 46.31	0	1804449..1804895	-	148	145589912	-	Pnuc_1732	-	peptidylprolyl isomerase, FKBP-type
1724	 47.36	0	1804899..1805618	+	239	145589913	-	Pnuc_1733	-	DNA repair protein RadC
1725	 45.73	0	1805766..1805999	+	77	145589914	-	Pnuc_1734	-	ribosomal protein L28
1726	 39.88	-1	1806011..1806178	+	55	145589915	-	Pnuc_1735	-	ribosomal protein L33
1727	 46.42	0	1806292..1807491	-	399	145589916	-	Pnuc_1736	-	fatty acid desaturase
1728	 48.07	+1	1807521..1808918	-	465	145589917	-	Pnuc_1737	-	Fmu (Sun) domain-containing protein
1729	 48.57	+1	1809077..1809706	-	209	145589918	-	Pnuc_1738	-	phosphoribosylglycinamide formyltransferase
1730	 46.06	0	1809746..1810696	+	316	145589919	-	Pnuc_1739	-	riboflavin biosynthesis protein RibF
1731	 45.56	0	1810689..1813550	+	953	145589920	ileS	Pnuc_1740	-	isoleucyl-tRNA synthetase
1732	 45.40	0	1813567..1814055	+	162	145589921	-	Pnuc_1741	-	lipoprotein signal peptidase
1733	 46.62	0	1814065..1815276	+	403	145589922	-	Pnuc_1742	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1734	 45.78	0	1815319..1815768	+	149	145589923	-	Pnuc_1743	-	deoxyuridine 5'-triphosphate nucleotidohydrolase Dut
1735	 46.35	0	1815771..1816331	+	186	145589924	-	Pnuc_1744	-	CMP/dCMP deaminase, zinc-binding
1736	 42.86	0	1816354..1817592	-	412	145589925	-	Pnuc_1745	-	sodium:dicarboxylate symporter
1737	 44.40	0	1817605..1819014	-	469	145589926	-	Pnuc_1746	-	fumarate lyase
1738	 46.58	0	1819323..1819556	-	77	145589927	-	Pnuc_1747	-	hypothetical protein
1739	 46.16	0	1819584..1821890	-	768	145589928	-	Pnuc_1748	-	ATP-dependent Clp protease, ATP-binding subunit clpA
1740	 43.98	0	1821887..1822243	-	118	145589929	-	Pnuc_1749	-	ATP-dependent Clp protease adaptor protein ClpS
1741	 43.14	0	1822519..1822722	+	67	145589930	-	Pnuc_1750	-	cold-shock DNA-binding domain-containing protein
1742	 44.59	0	1822806..1823258	+	150	145589931	-	Pnuc_1751	-	hypothetical protein
1743	 42.48	0	1823338..1823643	-	101	145589932	-	Pnuc_1752	-	hypothetical protein
1744	 47.69	0	1823674..1824906	-	410	145589933	-	Pnuc_1753	-	argininosuccinate synthase
1745	 47.09	0	1824945..1825925	-	326	145589934	-	Pnuc_1754	-	ornithine carbamoyltransferase
1746	 48.18	+1	1826044..1826346	+	100	145589935	-	Pnuc_1755	-	hypothetical protein
1747	 47.19	0	1826434..1826700	-	88	145589936	-	Pnuc_1756	-	ribosomal protein S20
1748	 50.64	+2	1826852..1828405	+	517	145589937	-	Pnuc_1757	-	integral membrane protein MviN
1749	 45.55	0	1828411..1829253	+	280	145589938	-	Pnuc_1758	-	hypothetical protein
1750	 43.61	0	1829292..1829933	-	213	145589939	-	Pnuc_1759	-	hypothetical protein
1751	 48.00	+1	1829989..1830990	+	333	145589940	-	Pnuc_1760	-	tRNA delta(2)-isopentenylpyrophosphate transferase
1752	 48.91	+1	1831001..1832053	-	350	145589941	-	Pnuc_1761	-	phosphoribosylformylglycinamidine cyclo-ligase
1753	 44.14	0	1832126..1833115	+	329	145589942	-	Pnuc_1762	-	hypothetical protein
1754	 45.50	0	1833126..1833881	+	251	145589943	-	Pnuc_1763	-	chromosomal replication initiator, DnaA
1755	 45.81	0	1833901..1834581	+	226	145589944	-	Pnuc_1764	-	HAD family hydrolase
1756	 48.43	+1	1834578..1835981	+	467	145589945	-	Pnuc_1765	-	poly(A) polymerase
1757	 45.45	0	1836034..1836561	+	175	145589946	-	Pnuc_1766	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
1758	 49.82	+1	1836579..1837397	+	272	145589947	-	Pnuc_1767	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1759	 47.94	+1	1837405..1838547	-	380	145589948	-	Pnuc_1768	-	chaperone protein DnaJ
1760	 46.15	0	1838648..1840582	-	644	145589949	-	Pnuc_1769	-	chaperone protein DnaK
45.00	MEAN

2.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.