IslandPathversion 1.0

IslandPath Analysis: Polynucleobacter sp. QLW-P1DMWA-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.00 STD DEV: 2.74
Polynucleobacter sp. QLW-P1DMWA-1, complete genome - 1..2159490
2077 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1574	 42.64	0	1652729..1653502	+	257	145589763	-	Pnuc_1582	-	hypothetical protein
1575	 44.70	0	1653507..1654412	-	301	145589764	-	Pnuc_1583	-	hypothetical protein
1576	 43.23	0	1654463..1655230	-	255	145589765	-	Pnuc_1584	-	phospholipid/glycerol acyltransferase
1577	 42.75	0	1655338..1656144	+	268	145589766	-	Pnuc_1585	-	metallophosphoesterase
1578	 44.22	0	1656141..1657169	+	342	145589767	-	Pnuc_1586	-	glycosyl transferase, group 1
1579	 45.68	0	1657182..1657586	+	134	145589768	-	Pnuc_1587	-	diacylglycerol kinase
1580	 41.99	-1	1657628..1658551	+	307	145589769	-	Pnuc_1588	-	putative hemolysin-like protein
1581	 46.19	0	1658608..1660170	-	520	145589770	-	Pnuc_1589	-	Ppx/GppA phosphatase
1582	 48.83	+1	1660281..1660493	-	70	145589771	-	Pnuc_1590	-	hypothetical protein
1583	 44.49	0	1660548..1661264	-	238	145589772	-	Pnuc_1591	-	MgtC/SapB transporter
1584	 41.92	-1	1661282..1663027	-	581	145589773	-	Pnuc_1592	-	alkaline phosphatase
1585	 42.21	-1	1663123..1664553	-	476	145589774	-	Pnuc_1593	-	hypothetical protein
1586	 45.83	0	1664607..1665110	-	167	145589775	-	Pnuc_1594	-	protein tyrosine phosphatase
1587	 50.52	+2	1665543..1666019	+	158	145589776	-	Pnuc_1595	-	MgtC/SapB transporter
1588	 43.80	0	1666300..1667598	-	432	145589777	-	Pnuc_1596	-	integral membrane sensor signal transduction histidine kinase
1589	 44.40	0	1667664..1668377	-	237	145589778	-	Pnuc_1597	-	two component transcriptional regulator
1590	 42.80	0	1668393..1669100	-	235	145589779	-	Pnuc_1598	-	phosphate uptake regulator, PhoU
1591	 42.17	-1	1669113..1669949	-	278	145589780	-	Pnuc_1599	-	phosphate ABC transporter, ATPase subunit
1592	 45.44	0	1669958..1670824	-	288	145589781	-	Pnuc_1600	-	phosphate ABC transporter, inner membrane subunit PstA
1593	 41.74	-1	1670821..1671807	-	328	145589782	-	Pnuc_1601	-	phosphate ABC transporter, inner membrane subunit PstC
1594	 41.74	-1	1671880..1672902	-	340	145589783	-	Pnuc_1602	-	phosphate ABC transporter, periplasmic phosphate-binding protein
1595	 43.35	0	1673040..1673588	-	182	145589784	-	Pnuc_1603	-	putative lipoprotein
1596	 45.59	0	1673588..1674142	-	184	145589785	-	Pnuc_1604	-	hypothetical protein
1597	 45.02	0	1674151..1674552	-	133	145589786	-	Pnuc_1605	-	putative thiol-disulphide oxidoreductase DCC
1598	 45.69	0	1674614..1675309	+	231	145589787	-	Pnuc_1606	-	short-chain dehydrogenase/reductase SDR
1599	 46.30	0	1675332..1675493	-	53	145589788	-	Pnuc_1607	-	hypothetical protein
1600	 44.66	0	1675502..1677037	-	511	145589789	-	Pnuc_1608	-	deoxyribodipyrimidine photolyase-related protein
1601	 44.07	0	1677034..1677303	-	89	145589790	-	Pnuc_1609	-	hypothetical protein
1602	 39.94	-1	1677399..1677746	+	115	145589791	-	Pnuc_1610	-	hypothetical protein
1603	 45.96	0	1677845..1678660	-	271	145589792	-	Pnuc_1611	-	methylmalonyl-CoA decarboxylase
1604	 44.36	0	1678657..1679817	-	386	145589793	-	Pnuc_1612	-	L-carnitine dehydratase/bile acid-inducible protein F
1605	 43.36	0	1679947..1681212	-	421	145589794	-	Pnuc_1613	-	hypothetical protein
1606	 43.77	0	1681366..1682352	-	328	145589795	-	Pnuc_1614	-	cytochrome d ubiquinol oxidase, subunit II
1607	 41.99	-1	1682342..1683796	-	484	145589796	-	Pnuc_1615	-	cytochrome bd ubiquinol oxidase, subunit I
1608	 43.77	0	1683828..1685312	-	494	145589797	-	Pnuc_1616	-	malate:quinone oxidoreductase
1609	 44.09	0	1685346..1685726	-	126	145589798	-	Pnuc_1617	-	hypothetical protein
1610	 45.54	0	1685766..1687223	-	485	145589799	fumC	Pnuc_1618	-	fumarate hydratase
1611	 41.13	-1	1687471..1688163	-	230	145589800	-	Pnuc_1619	-	hypothetical protein
1612	 39.09	-2	1688163..1688405	-	80	145589801	-	Pnuc_1620	-	hypothetical protein
1613	 41.74	-1	1688548..1689558	-	336	145589802	-	Pnuc_1621	-	Mg2+ transporter protein, CorA family protein
1614	 42.25	-1	1689617..1690480	+	287	145589803	-	Pnuc_1622	-	hypothetical protein
1615	 41.67	-1	1691038..1691517	-	159	145589804	-	Pnuc_1623	-	hypothetical protein
1616	 42.43	0	1691782..1693650	-	622	145589805	-	Pnuc_1624	-	Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
1617	 41.49	-1	1693860..1694288	-	142	145589806	-	Pnuc_1625	-	hypothetical protein
1618	 45.32	0	1694400..1694933	-	177	145589807	-	Pnuc_1626	-	superoxide dismutase, copper/zinc binding
1619	 44.16	0	1695079..1695660	+	193	145589808	-	Pnuc_1627	-	putative phosphohistidine phosphatase, SixA
1620	 43.50	0	1695811..1696410	-	199	145589809	-	Pnuc_1628	-	hypothetical protein
1621	 43.55	0	1696586..1697476	-	296	145589810	-	Pnuc_1629	-	hypothetical protein
1622	 43.70	0	1697494..1698072	-	192	145589811	-	Pnuc_1630	-	PfpI family intracellular peptidase
1623	 43.37	0	1698102..1698878	-	258	145589812	-	Pnuc_1631	-	hydroxypyruvate isomerase
1624	 44.49	0	1698893..1699555	-	220	145589813	-	Pnuc_1632	-	putative aldolase
1625	 46.87	0	1699552..1700829	-	425	145589814	-	Pnuc_1633	-	type III effector Hrp-dependent outers
1626	 47.67	0	1700857..1701756	-	299	145589815	-	Pnuc_1634	-	3-hydroxyisobutyrate dehydrogenase
1627	 45.39	0	1701823..1703124	-	433	145589816	-	Pnuc_1635	-	major facilitator transporter
1628	 45.07	0	1703317..1704117	+	266	145589817	-	Pnuc_1636	-	GntR domain-containing protein
1629	 43.22	0	1704114..1705094	-	326	145589818	-	Pnuc_1637	-	NAD-dependent epimerase/dehydratase
1630	 44.37	0	1705234..1706130	+	298	145589819	-	Pnuc_1638	-	hypothetical protein
1631	 43.78	0	1706378..1707181	-	267	145589820	-	Pnuc_1640	-	extracellular solute-binding protein
1632	 42.41	0	1707239..1707910	-	223	145589821	-	Pnuc_1641	-	hypothetical protein
1633	 42.92	0	1708032..1708688	+	218	145589822	-	Pnuc_1642	-	DSBA oxidoreductase
1634	 45.78	0	1708703..1709851	+	382	145589823	-	Pnuc_1643	-	iron-containing alcohol dehydrogenase
1635	 38.48	-2	1709848..1710294	+	148	145589824	-	Pnuc_1644	-	thioesterase superfamily protein
1636	 40.66	-1	1710348..1711166	-	272	145589825	-	Pnuc_1645	-	hypothetical protein
1637	 43.45	0	1711292..1711894	-	200	145589826	-	Pnuc_1646	-	nitroreductase
1638	 42.47	0	1712017..1713417	-	466	145589827	-	Pnuc_1647	-	DNA polymerase III, epsilon subunit
1639	 40.99	-1	1713437..1714024	-	195	145589828	-	Pnuc_1648	-	BadM/Rrf2 family transcriptional regulator
1640	 43.41	0	1714060..1714605	+	181	145589829	-	Pnuc_1649	-	hypothetical protein
1641	 42.64	0	1714895..1715539	+	214	145589830	-	Pnuc_1650	-	peptidase S16, lon domain-containing protein
1642	 44.25	0	1715544..1716404	+	286	145589831	-	Pnuc_1651	-	hypothetical protein
1643	 38.10	-2	1716422..1716799	+	125	145589832	-	Pnuc_1652	-	hypothetical protein
1644	 45.68	0	1716996..1717400	-	134	145589833	-	Pnuc_1653	-	membrane-associated protein in eicosanoid and glutathione metabolism (MAPEG)
1645	 42.70	0	1717484..1718113	+	209	145589834	-	Pnuc_1654	-	2OG-Fe(II) oxygenase
1646	 44.91	0	1718106..1719107	+	333	145589835	-	Pnuc_1655	-	FAD dependent oxidoreductase
1647	 42.47	0	1719126..1719530	+	134	145589836	-	Pnuc_1656	-	hypothetical protein
1648	 42.04	-1	1719827..1720768	+	313	145589837	-	Pnuc_1657	-	ABC transporter related
1649	 41.41	-1	1720758..1721525	+	255	145589838	-	Pnuc_1658	-	ABC-2 type transporter
1650	 41.13	-1	1721589..1721870	-	93	145589839	-	Pnuc_1659	-	hypothetical protein
1651	 40.61	-1	1721966..1722913	+	315	145589840	-	Pnuc_1660	-	hypothetical protein
1652	 43.66	0	1722903..1724141	+	412	145589841	-	Pnuc_1661	-	hypothetical protein
1653	 42.39	0	1724131..1725267	+	378	145589842	-	Pnuc_1662	-	aminotransferase, class I and II
1654	 43.35	0	1725400..1726677	-	425	145589843	-	Pnuc_1663	-	general substrate transporter
1655	 39.39	-2	1727007..1727534	+	175	145589844	-	Pnuc_1664	-	GCN5-related N-acetyltransferase
1656	 42.47	0	1727673..1728953	-	426	145589845	-	Pnuc_1665	-	major facilitator superfamily metabolite/H(+) symporter
1657	 43.72	0	1729124..1729816	-	230	145589846	-	Pnuc_1666	-	two component transcriptional regulator
1658	 43.69	0	1729836..1732529	-	897	145589847	-	Pnuc_1667	-	osmosensitive K+ channel signal transduction histidine kinase
1659	 44.56	0	1732535..1733104	-	189	145589848	-	Pnuc_1668	-	potassium-transporting ATPase, C subunit
1660	 45.91	0	1733135..1735210	-	691	145589849	-	Pnuc_1669	-	K+-transporting ATPase, B subunit
1661	 43.89	0	1735229..1737019	-	596	145589850	-	Pnuc_1670	-	potassium-transporting ATPase subunit A
1662	 41.99	-1	1737953..1738333	-	126	145589851	-	Pnuc_1671	-	hypothetical protein
1663	 42.51	0	1738345..1738671	-	108	145589852	-	Pnuc_1672	-	heavy metal transport/detoxification protein
1664	 45.70	0	1738694..1739332	-	212	145589853	-	Pnuc_1673	-	hypothetical protein
1665	 43.62	0	1739329..1739610	-	93	145589854	-	Pnuc_1674	-	hypothetical protein
1666	 44.73	0	1739682..1740032	-	116	145589855	-	Pnuc_1675	-	hypothetical protein
1667	 46.00	0	1740201..1740713	-	170	145589856	-	Pnuc_1676	-	hypothetical protein
1668	 45.71	0	1740755..1742935	-	726	145589857	-	Pnuc_1677	-	heavy metal translocating P-type ATPase
1669	 42.36	0	1743034..1743432	+	132	145589858	-	Pnuc_1678	-	MerR family transcriptional regulator
1670	 43.98	0	1743589..1744818	-	409	145589859	-	Pnuc_1679	-	hypothetical protein
1671	 44.61	0	1744815..1747943	-	1042	145589860	-	Pnuc_1680	-	CzcA family heavy metal efflux protein
1672	 46.34	0	1747943..1749049	-	368	145589861	-	Pnuc_1681	-	RND family efflux transporter MFP subunit
1673	 44.36	0	1749113..1749520	-	135	145589862	-	Pnuc_1682	-	hypothetical protein
45.00	MEAN

2.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.