IslandPathversion 1.0

IslandPath Analysis: Polynucleobacter sp. QLW-P1DMWA-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.00 STD DEV: 2.74
Polynucleobacter sp. QLW-P1DMWA-1, complete genome - 1..2159490
2077 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1417	 46.06	0	1495972..1496403	-	143	145589606	-	Pnuc_1425	-	cyclase/dehydrase
1418	 49.89	+1	1496429..1496881	+	150	145589607	smpB	Pnuc_1426	-	SsrA-binding protein
1419	 46.36	0	1497022..1498434	+	470	145589608	-	Pnuc_1427	-	hypothetical protein
1420	 42.54	0	1498448..1499425	+	325	145589609	-	Pnuc_1428	-	hypothetical protein
1421	 44.36	0	1499444..1500241	+	265	145589610	-	Pnuc_1429	-	transglutaminase domain-containing protein
1422	 44.48	0	1500298..1501176	+	292	145589611	-	Pnuc_1430	-	hypothetical protein
1423	 45.13	0	1501275..1501808	+	177	145589612	-	Pnuc_1431	-	ISPsy8, transposase OrfA
1424	 45.51	0	1501823..1502635	+	270	145589613	-	Pnuc_1432	-	integrase catalytic subunit
1425	 45.89	0	1502719..1505124	-	801	145589614	-	Pnuc_1433	-	phosphoenolpyruvate synthase
1426	 46.50	0	1505231..1506058	+	275	145589615	-	Pnuc_1434	-	hypothetical protein
1427	 45.08	0	1506073..1507374	-	433	145589616	-	Pnuc_1435	-	secretory lipase
1428	 45.94	0	1507417..1508241	-	274	145589617	-	Pnuc_1436	-	tRNA/rRNA methyltransferase (SpoU)
1429	 48.22	+1	1508247..1508837	-	196	145589618	-	Pnuc_1437	-	ribonuclease H
1430	 46.19	0	1508834..1510039	-	401	145589619	-	Pnuc_1438	-	lipid-A-disaccharide synthase
1431	 45.86	0	1510053..1510850	-	265	145589620	-	Pnuc_1439	-	UDP-N-acetylglucosamine acyltransferase
1432	 44.22	0	1510850..1511299	-	149	145589621	-	Pnuc_1440	-	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ
1433	 46.82	0	1511346..1512413	-	355	145589622	lpxD	Pnuc_1441	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1434	 43.37	0	1512419..1512946	-	175	145589623	-	Pnuc_1442	-	outer membrane chaperone Skp (OmpH)
1435	 43.52	0	1512965..1515241	-	758	145589624	-	Pnuc_1443	-	surface antigen (D15)
1436	 48.41	+1	1515310..1516443	-	377	145589625	-	Pnuc_1444	-	putative membrane-associated zinc metalloprotease
1437	 48.95	+1	1516465..1517649	-	394	145589626	-	Pnuc_1445	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1438	 46.38	0	1517649..1518476	-	275	145589627	-	Pnuc_1446	-	phosphatidate cytidylyltransferase
1439	 47.16	0	1518506..1519279	-	257	145589628	-	Pnuc_1447	-	undecaprenyl diphosphate synthase
1440	 43.32	0	1519304..1519864	-	186	145589629	-	Pnuc_1448	-	ribosome recycling factor
1441	 47.68	0	1519876..1520586	-	236	145589630	pyrH	Pnuc_1449	-	uridylate kinase
1442	 45.99	0	1520783..1521667	-	294	145589631	-	Pnuc_1450	-	translation elongation factor Ts
1443	 43.20	0	1521667..1522416	-	249	145589632	-	Pnuc_1451	-	ribosomal protein S2
1444	 45.28	0	1522685..1523521	+	278	145589633	-	Pnuc_1452	-	methionine aminopeptidase, type I
1445	 45.65	0	1523525..1526122	+	865	145589634	-	Pnuc_1453	-	PII uridylyl-transferase
1446	 42.09	-1	1526200..1526610	-	136	145589635	-	Pnuc_1454	-	DoxX family protein
1447	 45.59	0	1526654..1528669	-	671	145589636	-	Pnuc_1455	-	DNA ligase, NAD-dependent
1448	 44.95	0	1528679..1529737	-	352	145589637	-	Pnuc_1456	-	ZipA, C-terminal FtsZ-binding region
1449	 47.76	+1	1529756..1533277	-	1173	145589638	-	Pnuc_1457	-	chromosome segregation protein SMC
1450	 49.76	+1	1533452..1534279	+	275	145589639	-	Pnuc_1458	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
1451	 46.27	0	1534290..1535441	+	383	145589640	-	Pnuc_1459	-	succinyl-diaminopimelate desuccinylase
1452	 48.27	+1	1535479..1536375	+	298	145589641	-	Pnuc_1460	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
1453	 47.40	0	1536388..1537752	-	454	145589642	-	Pnuc_1461	-	DNA repair protein RadA
1454	 45.69	0	1537807..1538316	-	169	145589643	-	Pnuc_1462	-	hypothetical protein
1455	 44.60	0	1538313..1540256	-	647	145589644	-	Pnuc_1463	-	K+ potassium transporter
1456	 51.08	+2	1540586..1540957	-	123	145589645	-	Pnuc_1464	-	hypothetical protein
1457	 44.60	0	1541006..1543411	-	801	145589646	-	Pnuc_1465	-	DNA internalization-related competence protein ComEC/Rec2
1458	 45.04	0	1543491..1544327	-	278	145589647	-	Pnuc_1466	-	TatD-related deoxyribonuclease
1459	 48.35	+1	1544339..1545037	-	232	145589648	-	Pnuc_1467	-	ABC transporter related
1460	 47.27	0	1545030..1546292	-	420	145589649	-	Pnuc_1468	-	LolC/E family lipoprotein releasing system, transmembrane protein
1461	 46.28	0	1546339..1547319	+	326	145589650	-	Pnuc_1469	-	hypothetical protein
1462	 49.12	+1	1547316..1549076	+	586	145589651	-	Pnuc_1470	-	single-stranded-DNA-specific exonuclease RecJ
1463	 46.00	0	1549166..1550215	+	349	145589652	-	Pnuc_1471	-	peptide chain release factor 2
1464	 46.86	0	1550254..1551798	+	514	145589653	-	Pnuc_1472	-	lysyl-tRNA synthetase
1465	 41.03	-1	1552268..1552774	-	168	145589654	-	Pnuc_1473	-	hypothetical protein
1466	 42.07	-1	1552792..1553283	-	163	145589655	-	Pnuc_1474	-	OmpA/MotB domain-containing protein
1467	 43.79	0	1553368..1553721	-	117	145589656	-	Pnuc_1475	-	hypothetical protein
1468	 45.44	0	1553929..1554903	-	324	145589657	-	Pnuc_1476	-	cysteine synthase A
1469	 45.24	0	1555082..1555627	+	181	145589658	-	Pnuc_1477	-	peptide deformylase
1470	 44.17	0	1555643..1556122	-	159	145589659	-	Pnuc_1478	-	disulphide bond formation protein DsbB
1471	 45.30	0	1556274..1557050	+	258	145589660	-	Pnuc_1479	-	ferredoxin--NADP(+) reductase
1472	 43.52	0	1557351..1558145	+	264	145589661	-	Pnuc_1480	-	hypothetical protein
1473	 44.17	0	1558142..1558870	+	242	145589662	-	Pnuc_1481	-	adenylylsulfate reductase, thioredoxin dependent
1474	 46.86	0	1558893..1559816	+	307	145589663	-	Pnuc_1482	-	sulfate adenylyltransferase subunit 2
1475	 46.21	0	1559816..1561159	+	447	145589664	-	Pnuc_1483	-	sulfate adenylyltransferase, large subunit
1476	 50.74	+2	1561263..1562474	+	403	145589665	-	Pnuc_1484	-	hypothetical protein
1477	 42.86	0	1562520..1562876	+	118	145589666	-	Pnuc_1485	-	hypothetical protein
1478	 39.10	-2	1562932..1563243	-	103	145589667	-	Pnuc_1486	-	cytochrome c, class I
1479	 43.00	0	1563254..1564474	-	406	145589668	-	Pnuc_1487	-	oxidoreductase, molybdopterin binding
1480	 46.90	0	1564741..1565079	-	112	145589669	-	Pnuc_1488	-	ferredoxin, 2Fe-2S type, ISC system
1481	 46.20	0	1565110..1566975	-	621	145589670	-	Pnuc_1489	-	Fe-S protein assembly chaperone HscA
1482	 45.45	0	1567004..1567531	-	175	145589671	-	Pnuc_1490	-	co-chaperone Hsc20
1483	 45.99	0	1567509..1567832	-	107	145589672	-	Pnuc_1491	-	iron-sulfur cluster assembly protein IscA
1484	 45.99	0	1567851..1568237	-	128	145589673	-	Pnuc_1492	-	FeS cluster assembly scaffold IscU
1485	 46.43	0	1568270..1569529	-	419	145589674	-	Pnuc_1493	-	cysteine desulfurase IscS
1486	 45.26	0	1569559..1570128	-	189	145589675	-	Pnuc_1494	-	BadM/Rrf2 family transcriptional regulator
1487	 47.29	0	1570265..1572421	-	718	145589676	-	Pnuc_1495	-	excinuclease ABC subunit B
1488	 46.42	0	1572581..1573780	+	399	145589677	-	Pnuc_1496	-	aromatic amino acid aminotransferase
1489	 44.42	0	1573812..1575101	+	429	145589678	-	Pnuc_1497	-	polyhydroxyalkanoate depolymerase, intracellular
1490	 48.48	+1	1575156..1575848	+	230	145589679	-	Pnuc_1498	-	electron transport complex, RnfABCDGE type, B subunit
1491	 43.79	0	1575845..1576504	+	219	145589680	-	Pnuc_1499	-	endonuclease III
1492	 45.14	0	1576491..1576922	+	143	145589681	-	Pnuc_1500	-	hypothetical protein
1493	 42.79	0	1576926..1577327	-	133	145589682	-	Pnuc_1501	-	hypothetical protein
1494	 48.25	+1	1577324..1578496	-	390	145589683	-	Pnuc_1502	-	acetyl-CoA acetyltransferase
1495	 45.70	0	1578520..1579182	-	220	145589684	-	Pnuc_1503	-	3-oxoacid CoA-transferase, B subunit
1496	 47.62	0	1579179..1579850	-	223	145589685	-	Pnuc_1504	-	3-oxoacid CoA-transferase, A subunit
1497	 46.03	0	1579918..1580358	-	146	145589686	-	Pnuc_1505	-	histidine triad (HIT) protein
1498	 45.88	0	1580465..1581763	-	432	145589687	-	Pnuc_1506	-	isocitrate lyase
1499	 45.31	0	1582036..1583271	-	411	145589688	-	Pnuc_1507	-	major facilitator transporter
1500	 47.78	+1	1583303..1584271	-	322	145589689	-	Pnuc_1508	-	hypothetical protein
1501	 43.78	0	1584283..1585584	-	433	145589690	-	Pnuc_1509	-	TRAP transporter solute receptor TAXI family protein
1502	 47.05	0	1585634..1586821	-	395	145589691	-	Pnuc_1510	-	TPR repeat-containing protein
1503	 43.89	0	1586818..1587300	-	160	145589692	-	Pnuc_1511	-	cytochrome C biogenesis protein
1504	 44.26	0	1587297..1587827	-	176	145589693	-	Pnuc_1512	-	periplasmic protein thiol--disulphide oxidoreductase DsbE
1505	 45.21	0	1587824..1589743	-	639	145589694	-	Pnuc_1513	-	cytochrome c-type biogenesis protein CcmF
1506	 45.06	0	1589740..1590174	-	144	145589695	-	Pnuc_1514	-	CcmE/CycJ protein
1507	 45.50	0	1590171..1590359	-	62	145589696	-	Pnuc_1515	-	heme exporter protein D (CcmD)
1508	 43.97	0	1590359..1591129	-	256	145589697	-	Pnuc_1516	-	heme exporter protein CcmC
1509	 47.83	+1	1591126..1591746	-	206	145589698	-	Pnuc_1517	-	heme exporter protein CcmB
1510	 46.30	0	1591788..1592435	-	215	145589699	-	Pnuc_1518	-	heme exporter protein CcmA
1511	 39.58	-1	1592641..1593216	-	191	145589700	-	Pnuc_1519	-	YceI family protein
1512	 40.93	-1	1593268..1593846	-	192	145589701	-	Pnuc_1520	-	YceI family protein
1513	 43.35	0	1593833..1594381	-	182	145589702	-	Pnuc_1521	-	cytochrome B561
1514	 45.77	0	1594381..1594935	-	184	145589703	-	Pnuc_1522	-	putative flavodoxin
1515	 42.03	-1	1594972..1595385	-	137	145589704	-	Pnuc_1523	-	MarR family transcriptional regulator
1516	 46.15	0	1595502..1596359	-	285	145589705	-	Pnuc_1524	-	beta-lactamase domain-containing protein
45.00	MEAN

2.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.