IslandPathversion 1.0

IslandPath Analysis: Polynucleobacter sp. QLW-P1DMWA-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.00 STD DEV: 2.74
Polynucleobacter sp. QLW-P1DMWA-1, complete genome - 1..2159490
2077 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
81	 45.62	0	75254..76930	+	558	145588270	-	Pnuc_0081	-	protein-disulfide reductase
82	 44.04	0	76935..77429	+	164	145588271	-	Pnuc_0082	-	MOSC domain-containing protein
83	 46.39	0	77418..78443	-	341	145588272	-	Pnuc_0083	-	delta-aminolevulinic acid dehydratase
84	 45.65	0	78421..79086	-	221	145588273	-	Pnuc_0084	-	GTP-binding protein, HSR1-related
85	 48.72	+1	79202..79942	+	246	145588274	-	Pnuc_0085	-	cytochrome c553-like protein
86	 45.73	0	80034..81332	-	432	145588275	-	Pnuc_0086	-	diaminopimelate decarboxylase
87	 44.88	0	81571..81951	+	126	145588276	-	Pnuc_0087	-	frataxin family protein
88	 47.15	0	81968..83053	-	361	145588277	-	Pnuc_0088	-	3-dehydroquinate synthase
89	 47.74	0	83059..83544	-	161	145588278	-	Pnuc_0089	-	shikimate kinase
90	 44.07	0	83596..84657	-	353	145588279	-	Pnuc_0090	-	type II and III secretion system protein
91	 43.87	0	84714..85406	-	230	145588280	-	Pnuc_0091	-	hypothetical protein
92	 47.37	0	85548..87884	+	778	145588281	-	Pnuc_0092	-	1A family penicillin-binding protein
93	 45.96	0	87897..88601	+	234	145588282	-	Pnuc_0093	-	hypothetical protein
94	 46.67	0	88797..93542	+	1581	145588283	-	Pnuc_0094	-	glutamate synthase (ferredoxin)
95	 45.63	0	93581..95044	+	487	145588284	-	Pnuc_0095	-	glutamate synthase, NADH/NADPH, small subunit
96	 46.17	0	95055..95903	+	282	145588285	-	Pnuc_0096	-	ABC transporter related
97	 44.61	0	95903..96700	+	265	145588286	-	Pnuc_0097	-	hypothetical protein
98	 42.65	0	96722..97204	+	160	145588287	-	Pnuc_0098	-	hypothetical protein
99	 45.32	0	97204..97962	+	252	145588288	-	Pnuc_0099	-	VacJ family lipoprotein
100	 42.81	0	98024..98656	+	210	145588289	-	Pnuc_0100	-	toluene tolerance family protein
101	 41.86	-1	98670..98927	+	85	145588290	-	Pnuc_0101	-	sulfate transporter/antisigma-factor antagonist STAS
102	 46.22	0	98932..99684	+	250	145588291	-	Pnuc_0102	-	ABC transporter related
103	 42.59	0	99681..100469	+	262	145588292	-	Pnuc_0103	-	ABC-2 type transporter
104	 42.17	-1	100490..100738	+	82	145588293	-	Pnuc_0104	-	BolA family protein
105	 47.69	0	100781..102055	+	424	145588294	-	Pnuc_0105	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
106	 43.54	0	102076..102702	+	208	145588295	hisG	Pnuc_0106	-	ATP phosphoribosyltransferase catalytic subunit
107	 47.32	0	102737..104059	+	440	145588296	-	Pnuc_0107	-	histidinol dehydrogenase
108	 45.41	0	104079..105146	-	355	145588297	-	Pnuc_0108	-	histidinol-phosphate aminotransferase
109	 49.32	+1	105260..105847	+	195	145588298	-	Pnuc_0109	-	imidazoleglycerol-phosphate dehydratase
110	 45.55	0	105895..106557	+	220	145588299	-	Pnuc_0110	-	imidazole glycerol phosphate synthase, glutamine amidotransferase subunit
111	 46.59	0	106577..107338	+	253	145588300	-	Pnuc_0111	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
112	 50.07	+1	107338..108096	+	252	145588301	-	Pnuc_0112	-	imidazoleglycerol phosphate synthase, cyclase subunit
113	 48.07	+1	108139..108552	+	137	145588302	-	Pnuc_0113	-	phosphoribosyl-AMP cyclohydrolase
114	 47.76	+1	108585..108986	+	133	145588303	-	Pnuc_0114	-	phosphoribosyl-ATP pyrophosphohydrolase
115	 45.66	0	109013..109369	+	118	145588304	-	Pnuc_0115	-	histidine triad (HIT) protein
116	 39.19	-2	109386..109607	+	73	145588305	-	Pnuc_0116	-	twin arginine-targeting protein translocase
117	 46.96	0	109645..110121	+	158	145588306	tatB	Pnuc_0117	-	sec-independent translocase
118	 44.14	0	110140..110916	+	258	145588307	-	Pnuc_0118	-	Sec-independent protein translocase, TatC subunit
119	 44.94	0	112570..113844	+	424	145588308	-	Pnuc_0120	-	porin
120	 41.29	-1	113982..116180	+	732	145588309	-	Pnuc_0121	-	TPR repeat-containing protein
121	 39.84	-1	116170..118152	-	660	145588310	-	Pnuc_0122	-	TPR repeat-containing protein
122	 43.31	0	118149..119321	-	390	145588311	-	Pnuc_0123	-	peptidase S1 and S6, chymotrypsin/Hap
123	 45.63	0	119344..119766	-	140	145588312	-	Pnuc_0124	-	large conductance mechanosensitive channel protein
124	 52.24	+2	119904..120506	+	200	145588313	-	Pnuc_0125	-	ubiquinol-cytochrome c reductase, iron-sulfur subunit
125	 44.11	0	120517..121917	+	466	145588314	-	Pnuc_0126	-	cytochrome b/b6 domain-containing protein
126	 45.35	0	121951..122724	+	257	145588315	-	Pnuc_0127	-	cytochrome c1
127	 42.97	0	122834..123445	+	203	145588316	-	Pnuc_0128	-	glutathione S-transferase domain-containing protein
128	 43.87	0	123474..123881	+	135	145588317	-	Pnuc_0129	-	stringent starvation protein B
129	 39.41	-2	124186..124761	+	191	145588318	-	Pnuc_0130	-	TPR domain-containing protein
130	 44.44	0	124781..126121	-	446	145588319	-	Pnuc_0131	-	general substrate transporter
131	 41.88	-1	126296..126880	+	194	145588320	-	Pnuc_0132	-	phasin family protein
132	 45.02	0	126974..128248	-	424	145588321	-	Pnuc_0133	-	hypothetical protein
133	 42.72	0	128262..128570	-	102	145588322	-	Pnuc_0134	-	glutaredoxin-like protein
134	 45.54	0	128668..129519	-	283	145588323	-	Pnuc_0135	-	HemK family modification methylase
135	 48.52	+1	129527..130606	-	359	145588324	-	Pnuc_0136	-	peptide chain release factor 1
136	 47.38	0	130607..131923	-	438	145588325	-	Pnuc_0137	-	shikimate/quinate 5-dehydrogenase
137	 45.91	0	132189..132983	-	264	145588326	-	Pnuc_0138	-	uracil-DNA glycosylase superfamily protein
138	 44.59	0	132983..134767	-	594	145588327	-	Pnuc_0139	-	peptidase M61 domain-containing protein
139	 40.90	-1	134779..135492	-	237	145588328	-	Pnuc_0140	-	putative thiol:disulfide interchange protein
140	 48.08	+1	135485..136759	-	424	145588329	-	Pnuc_0141	-	UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase
141	 47.49	0	136800..137894	+	364	145588330	-	Pnuc_0142	-	GTP-binding protein YchF
142	 43.30	0	137967..138317	-	116	145588331	-	Pnuc_0143	-	hypothetical protein
143	 40.35	-1	138429..138998	+	189	145588332	-	Pnuc_0144	-	hypothetical protein
144	 44.53	0	138979..139782	-	267	145588333	-	Pnuc_0145	-	indole-3-glycerol-phosphate synthase
145	 47.95	+1	139792..140817	-	341	145588334	-	Pnuc_0146	-	anthranilate phosphoribosyltransferase
146	 44.09	0	140826..141392	-	188	145588335	-	Pnuc_0147	-	glutamine amidotransferase of anthranilate synthase
147	 46.15	0	141376..142881	-	501	145588336	-	Pnuc_0148	-	anthranilate synthase component I
148	 48.07	+1	142881..143606	-	241	145588337	-	Pnuc_0149	-	ribulose-phosphate 3-epimerase
149	 51.73	+2	143656..144030	+	124	145588338	apaG	Pnuc_0150	-	ApaG
150	 47.87	+1	144169..145296	+	375	145588339	-	Pnuc_0151	-	MltA domain-containing protein
151	 47.86	+1	145299..146489	-	396	145588340	-	Pnuc_0152	-	amidohydrolase
152	 43.51	0	146548..147264	-	238	145588341	-	Pnuc_0153	-	dethiobiotin synthase
153	 44.42	0	147261..148496	-	411	145588342	-	Pnuc_0154	-	8-amino-7-oxononanoate synthase
154	 44.99	0	148493..149908	-	471	145588343	-	Pnuc_0155	-	adenosylmethionine-8-amino-7-oxononanoate aminotransferase
155	 50.10	+1	149930..150967	+	345	145588344	-	Pnuc_0156	-	biotin synthase
156	 46.98	0	150979..151608	+	209	145588345	-	Pnuc_0157	-	putative ubiquinone biosynthesis protein
157	 49.07	+1	151901..152332	+	143	145588346	-	Pnuc_0158	-	cell division protein MraZ
158	 46.48	0	152345..153295	+	316	145588347	-	Pnuc_0159	-	S-adenosyl-methyltransferase MraW
159	 45.32	0	153292..153558	+	88	145588348	-	Pnuc_0160	-	cell division protein FtsL
160	 46.76	0	153555..155327	+	590	145588349	-	Pnuc_0161	-	peptidoglycan glycosyltransferase
161	 45.07	0	155324..156874	+	516	145588350	-	Pnuc_0162	-	UDP-N-acetylmuramyl-tripeptide synthetase
162	 43.78	0	156874..158319	+	481	145588351	-	Pnuc_0163	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
163	 43.08	0	158310..159479	+	389	145588352	-	Pnuc_0164	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
164	 44.98	0	159494..161116	+	540	145588353	-	Pnuc_0165	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase
165	 45.68	0	161113..162384	+	423	145588354	-	Pnuc_0166	-	cell division protein FtsW
166	 45.16	0	162381..163454	+	357	145588355	-	Pnuc_0167	-	UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase
167	 45.86	0	163451..164887	+	478	145588356	murC	Pnuc_0168	-	UDP-N-acetylmuramate--L-alanine ligase
168	 45.86	0	164880..165893	+	337	145588357	-	Pnuc_0169	-	D-alanine--D-alanine ligase
169	 45.34	0	165890..166747	+	285	145588358	-	Pnuc_0170	-	polypeptide-transport-associated domain-containing protein
170	 46.67	0	166757..167986	+	409	145588359	-	Pnuc_0171	-	cell division protein FtsA
171	 47.05	0	168035..169375	+	446	145588360	-	Pnuc_0172	-	cell division protein FtsZ
172	 43.31	0	169488..169988	+	166	145588361	-	Pnuc_0173	-	redoxin domain-containing protein
173	 44.70	0	170020..170934	+	304	145588362	lpxC	Pnuc_0174	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
174	 48.19	+1	170956..171453	-	165	145588363	-	Pnuc_0175	-	hypothetical protein
175	 46.31	0	171507..174272	+	921	145588364	-	Pnuc_0176	-	preprotein translocase, SecA subunit
176	 46.84	0	174442..174900	+	152	145588365	-	Pnuc_0177	-	2Fe-2S iron-sulfur cluster binding domain-containing protein
177	 47.46	0	174912..177035	+	707	145588366	-	Pnuc_0178	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
178	 48.14	+1	177114..178349	+	411	145588367	-	Pnuc_0179	-	arginine biosynthesis bifunctional protein ArgJ
179	 44.64	0	178364..179221	+	285	145588368	-	Pnuc_0180	-	hypothetical protein
180	 47.72	0	179231..179647	+	138	145588369	-	Pnuc_0181	-	NUDIX hydrolase
45.00	MEAN

2.74	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.