IslandPath Analysis: Polaromonas naphthalenivorans CJ2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.80   STD DEV: 5.38
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291
4084 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
36	 65.14	0	38686..39339	-	217	121602955	-	Pnap_0037	-	hypothetical protein
37	 69.93	+1	39336..40070	-	244	121602956	-	Pnap_0038	-	hypothetical protein
38	 65.70	0	40067..40897	-	276	121602957	-	Pnap_0039	-	ABC transporter related
39	 65.90	0	40903..41682	-	259	121602958	-	Pnap_0040	-	binding-protein-dependent transport systems inner membrane component
40	 62.34	0	41693..42709	-	338	121602959	-	Pnap_0041	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
41	 66.67	0	43159..43542	-	127	121602960	-	Pnap_0042	-	methylglyoxal synthase
42	 61.47	0	43586..44605	-	339	121602961	-	Pnap_0043	-	TRAP dicarboxylate transporter, DctP subunit
43	 65.04	0	44646..45938	-	430	121602962	-	Pnap_0044	-	TRAP dicarboxylate transporter, DctM subunit
44	 66.08	0	45944..46456	-	170	121602963	-	Pnap_0045	-	tripartite ATP-independent periplasmic transporter DctQ
45	 69.02	+1	46453..46962	-	169	121602964	-	Pnap_0046	-	carbohydrate kinase
46	 71.06	+1	47101..48171	+	356	121602965	-	Pnap_0047	-	periplasmic binding protein/LacI transcriptional regulator
47	 62.26	0	48364..48840	+	158	121602966	-	Pnap_0048	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
48	 65.91	0	48852..50699	+	615	121602967	-	Pnap_0049	-	aldehyde ferredoxin oxidoreductase
49	 66.74	0	50775..52064	+	429	121602968	-	Pnap_0050	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
50	 65.10	0	52061..52315	+	84	121602969	-	Pnap_0051	-	thiamineS protein
51	 71.33	+1	52320..52619	+	99	121602970	-	Pnap_0052	-	hypothetical protein
52	 63.73	0	52725..54020	+	431	121602971	-	Pnap_0053	-	acetyl-CoA hydrolase/transferase
53	 62.15	0	54110..55105	+	331	121602972	-	Pnap_0054	-	hypothetical protein
54	 73.99	+2	55153..55944	+	263	121602973	-	Pnap_0055	-	hypothetical protein
55	 67.19	0	56052..58742	-	896	121602974	-	Pnap_0056	-	GCN5-related N-acetyltransferase
56	 65.59	0	58751..59677	-	308	121602975	-	Pnap_0057	-	histone deacetylase superfamily protein
57	 63.57	0	59940..61100	-	386	121602976	-	Pnap_0058	-	hypothetical protein
58	 60.42	0	61169..63475	-	768	121602977	-	Pnap_0059	-	hypothetical protein
59	 66.92	0	63703..64887	-	394	121602978	-	Pnap_0060	-	beta-ketothiolase
60	 59.57	0	65095..65376	+	93	121602979	-	Pnap_0061	-	prevent-host-death family protein
61	 62.14	0	65380..65799	+	139	121602980	-	Pnap_0062	-	hypothetical protein
62	 62.67	0	65801..67804	+	667	121602981	-	Pnap_0063	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
63	 60.51	0	67804..68469	+	221	121602982	-	Pnap_0064	-	methyltransferase GidB
64	 62.04	0	68499..69125	+	208	121602983	-	Pnap_0065	-	lysine exporter protein LysE/YggA
65	 63.53	0	69180..69944	+	254	121602984	-	Pnap_0066	-	cobyrinic acid a,c-diamide synthase
66	 69.61	+1	70070..70612	+	180	121602985	-	Pnap_0067	-	hypothetical protein
67	 65.60	0	70682..71617	+	311	121602986	-	Pnap_0068	-	parB-like partition proteins
68	 67.37	0	71660..73081	-	473	121602987	-	Pnap_0069	-	FAD linked oxidase domain-containing protein
69	 65.82	0	73261..73854	+	197	121602988	-	Pnap_0070	-	ATP--cobalamin adenosyltransferase
70	 65.29	0	73873..74817	-	314	121602989	-	Pnap_0071	-	LysR family transcriptional regulator
71	 44.66	-2	74868..75176	-	102	121602990	-	Pnap_0072	-	hypothetical protein
72	 66.09	0	75670..77220	-	516	121602991	-	Pnap_0073	-	Acetyl-CoA hydrolase
73	 71.58	+1	77560..78861	+	433	121602992	-	Pnap_0074	-	hypothetical protein
74	 62.13	0	78921..79361	+	146	121602993	-	Pnap_0075	-	hypothetical protein
75	 65.03	0	79407..80693	-	428	121602994	-	Pnap_0076	-	uracil-xanthine permease
76	 66.15	0	80771..81925	-	384	121602995	-	Pnap_0077	-	twitching motility protein
77	 61.69	0	82107..82568	+	153	121602996	-	Pnap_0078	-	putative transposase, IS891/IS1136/IS1341
78	 63.36	0	82622..83347	+	241	121602997	-	Pnap_0079	-	IS605 family transposase OrfB
79	 71.24	+1	83455..84699	+	414	121602998	-	Pnap_0080	-	RND family efflux transporter MFP subunit
80	 67.78	0	84719..85981	+	420	121602999	-	Pnap_0081	-	hypothetical protein
81	 52.76	-1	86106..86903	-	265	121603000	-	Pnap_0082	-	hypothetical protein
82	 54.06	-1	87552..87908	+	118	121603001	-	Pnap_0084	-	hypothetical protein
83	 57.01	-1	87914..88234	+	106	121603002	-	Pnap_0085	-	putative transcriptional regulator
84	 69.54	+1	88241..88936	+	231	121603003	-	Pnap_0086	-	ABC transporter related
85	 59.11	0	89356..89646	+	96	121603004	-	Pnap_0087	-	hypothetical protein
86	 62.38	0	89793..90212	-	139	121603005	-	Pnap_0088	-	hypothetical protein
87	 70.36	+1	90501..92018	-	505	121603006	-	Pnap_0089	-	adenylate cyclase
88	 70.23	+1	92109..93173	-	354	121603007	-	Pnap_0090	-	hypothetical protein
89	 64.12	0	93497..96289	+	930	121603008	-	Pnap_0091	-	PAS/PAC sensor hybrid histidine kinase
90	 67.24	0	96335..96853	-	172	121603009	-	Pnap_0092	-	flavin reductase domain-containing protein
91	 64.98	0	96966..97262	-	98	121603010	-	Pnap_0093	-	hypothetical protein
92	 65.72	0	97385..98752	-	455	121603011	-	Pnap_0094	-	D-amino-acid dehydrogenase
93	 67.76	0	98864..99778	+	304	121603012	-	Pnap_0095	-	chromosome replication initiation inhibitor protein
94	 63.47	0	99880..101130	+	416	121603013	-	Pnap_0096	-	extracellular ligand-binding receptor
95	 65.31	0	101249..104923	+	1224	121603014	-	Pnap_0097	-	multi-sensor signal transduction histidine kinase
96	 60.28	0	105043..105465	-	140	121603015	-	Pnap_0098	-	UspA domain-containing protein
97	 66.98	0	105547..106497	-	316	121603016	-	Pnap_0099	-	metallophosphoesterase
98	 67.50	0	106815..107771	-	318	121603017	-	Pnap_0100	-	LysR family transcriptional regulator
99	 63.41	0	107919..108440	+	173	121603018	-	Pnap_0101	-	hypothetical protein
100	 63.46	0	108552..110420	-	622	121603019	-	Pnap_0102	-	phosphoenolpyruvate carboxykinase
101	 50.56	-2	110417..110683	-	88	121603020	-	Pnap_0103	-	hypothetical protein
102	 49.67	-2	111104..112474	-	456	121603021	-	Pnap_0104	-	hypothetical protein
103	 64.24	0	112533..113192	+	219	121603022	-	Pnap_0105	-	two component LuxR family transcriptional regulator
104	 64.49	0	113225..115198	+	657	121603023	-	Pnap_0106	-	integral membrane sensor hybrid histidine kinase
105	 67.57	0	115233..115898	-	221	121603024	-	Pnap_0107	-	ABC transporter related
106	 58.54	0	116006..116251	-	81	121603025	-	Pnap_0108	-	hypothetical protein
107	 69.62	+1	116291..116764	+	157	121603026	-	Pnap_0109	-	hypothetical protein
108	 64.94	0	116771..117349	+	192	121603027	-	Pnap_0110	-	MOSC domain-containing protein
109	 66.58	0	117376..118578	-	400	121603028	-	Pnap_0111	-	threonine dehydratase
110	 65.70	0	118782..121151	+	789	121603029	-	Pnap_0112	-	ATPase central domain-containing protein
111	 57.67	0	121574..121873	+	99	121603030	-	Pnap_0113	-	hypothetical protein
112	 66.82	0	122049..123968	-	639	121603031	-	Pnap_0114	-	ATP-dependent DNA helicase RecQ
113	 64.39	0	124205..125260	+	351	121603032	-	Pnap_0115	-	homocysteine S-methyltransferase
114	 62.22	0	125288..125872	-	194	121603033	-	Pnap_0116	-	cyclic nucleotide-binding protein
115	 62.55	0	126045..128864	+	939	121603034	-	Pnap_0117	-	methionine synthase
116	 65.03	0	129037..130506	+	489	121603035	-	Pnap_0118	-	hypothetical protein
117	 70.93	+1	130589..132136	-	515	121603036	-	Pnap_0119	-	Mg chelatase, subunit ChlI
118	 60.18	0	132475..132813	+	112	121603037	-	Pnap_0120	-	nitrogen regulatory protein P-II
119	 65.26	0	132847..134412	+	521	121603038	-	Pnap_0121	-	ammonium transporter
120	 69.04	+1	134558..135484	+	308	121603039	-	Pnap_0122	-	SMP-30/gluconolaconase/LRE domain-containing protein
121	 70.50	+1	135697..136845	+	382	121603040	glcE	Pnap_0123	-	glycolate oxidase FAD binding subunit
122	 65.36	0	136854..137618	+	254	121603041	-	Pnap_0124	-	hypothetical protein
123	 66.99	0	137627..138874	+	415	121603042	glcF	Pnap_0125	-	glycolate oxidase iron-sulfur subunit
124	 68.60	+1	139116..139478	+	120	121603043	-	Pnap_0126	-	hypothetical protein
125	 63.98	0	139586..140629	-	347	121603044	-	Pnap_0127	-	poly (3-hydroxybutyrate) depolymerase
126	 63.58	0	140744..141229	-	161	121603045	-	Pnap_0128	-	glutathione peroxidase
127	 69.75	+1	141352..142260	-	302	121603046	-	Pnap_0129	-	hypothetical protein
128	 64.48	0	142260..143540	-	426	121603047	-	Pnap_0130	-	hypothetical protein
129	 69.67	+1	143732..144829	+	365	121603048	-	Pnap_0131	-	alanine racemase
130	 68.93	+1	144826..145665	+	279	121603049	-	Pnap_0132	-	hypothetical protein
131	 64.90	0	145719..146114	+	131	121603050	-	Pnap_0133	-	DNA polymerase beta subunit
132	 65.27	0	146104..146532	+	142	121603051	-	Pnap_0134	-	hypothetical protein
133	 67.79	0	146529..147503	-	324	121603052	-	Pnap_0135	-	2-dehydropantoate 2-reductase
134	 67.98	0	147617..148684	-	355	121603053	-	Pnap_0136	-	hypothetical protein
135	 66.44	0	148739..149176	-	145	121603054	-	Pnap_0137	-	5-carboxymethyl-2-hydroxymuconate isomerase
62.80	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.