version 1.0
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291 4084 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 470 64.98 0 495411..497423 + 670 121603389 - Pnap_0475 - carbamoyl-phosphate synthase L chain, ATP-binding 471 66.24 0 497441..498370 + 309 121603390 - Pnap_0476 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 472 63.54 0 498375..499301 + 308 121603391 - Pnap_0477 - pyruvate carboxyltransferase 473 65.47 0 499301..500053 + 250 121603392 - Pnap_0478 - YbaK/prolyl-tRNA synthetase associated region 474 64.35 0 500050..500739 + 229 121603393 - Pnap_0479 - DSBA oxidoreductase 475 63.82 0 500800..502626 + 608 121603394 - Pnap_0480 - cyclic nucleotide-binding protein 476 64.40 0 502623..503285 + 220 121603395 - Pnap_0481 - DNA polymerase III subunit epsilon 477 62.15 0 503441..503794 + 117 121603396 - Pnap_0482 - transport-associated 478 55.08 -1 505881..506234 - 117 121603397 - Pnap_0484 - hypothetical protein 479 60.82 0 506556..508214 + 552 121603398 - Pnap_0485 - major facilitator superfamily transporter 480 61.90 0 508230..508733 + 167 121603399 - Pnap_0486 - hypothetical protein 481 58.51 0 508744..509847 - 367 121603400 - Pnap_0487 - extracellular ligand-binding receptor 482 67.07 0 510042..515939 + 1965 121603401 - Pnap_0488 - excinuclease ABC, A subunit 483 62.28 0 516348..517784 + 478 121603402 - Pnap_0489 - S-adenosyl-L-homocysteine hydrolase 484 65.00 0 517927..519003 + 358 121603403 - Pnap_0490 - ribosomal RNA methyltransferase RrmJ/FtsJ 485 63.78 0 519013..519843 + 276 121603404 - Pnap_0491 - 5,10-methylenetetrahydrofolate reductase 486 70.01 +1 519843..520559 + 238 121603405 - Pnap_0492 - rare lipoprotein A 487 62.82 0 520730..521353 + 207 121603406 - Pnap_0493 - hypothetical protein 488 62.99 0 521356..522768 + 470 121603407 - Pnap_0494 - cytochrome bd ubiquinol oxidase, subunit I 489 64.63 0 522761..523792 + 343 121603408 - Pnap_0495 - cytochrome bd ubiquinol oxidase, subunit II 490 63.64 0 523803..524825 - 340 121603409 - Pnap_0496 - hypothetical protein 491 65.60 0 524874..526469 - 531 121603410 - Pnap_0497 - regulator of RNA terminal phosphate cyclase 492 62.80 0 526614..527906 + 430 121603411 - Pnap_0498 - hypothetical protein 493 64.57 0 527926..529023 + 365 121603412 - Pnap_0499 - RNA-3'-phosphate cyclase 494 56.08 -1 529265..529708 + 147 121603413 rplM Pnap_0500 - 50S ribosomal protein L13 495 60.81 0 529705..530097 + 130 121603414 - Pnap_0501 - ribosomal protein S9 496 57.38 -1 530261..530626 + 121 121603415 - Pnap_0502 - iron-sulfur cluster insertion protein ErpA 497 67.38 0 530809..533061 + 750 121603416 - Pnap_0503 - helicase c2 498 66.40 0 533105..534244 - 379 121603417 anmK Pnap_0504 - anhydro-N-acetylmuramic acid kinase 499 65.59 0 534281..535678 - 465 121603418 - Pnap_0505 - peptidase M23B 500 63.58 0 535905..537137 + 410 121603419 - Pnap_0506 - tyrosyl-tRNA synthetase 501 68.39 +1 537151..537615 + 154 121603420 - Pnap_0507 - D-tyrosyl-tRNA deacylase 502 62.72 0 537696..538151 - 151 121603421 - Pnap_0508 - hypothetical protein 503 65.51 0 538141..539178 - 345 121603422 - Pnap_0509 - PhoH family protein 504 64.94 0 539239..539817 + 192 121603423 ruvA Pnap_0510 - Holliday junction DNA helicase motor protein 505 46.17 -2 539830..540756 + 308 121603424 - Pnap_0511 - hypothetical protein 506 65.36 0 540753..541823 + 356 121603425 ruvB Pnap_0512 - Holliday junction DNA helicase B 507 67.34 0 542006..543196 - 396 121603426 - Pnap_0513 - putative threonine aldolase 508 69.04 +1 543224..543898 - 224 121603427 - Pnap_0514 - phosphoglycerate mutase 509 66.19 0 543948..544574 - 208 121603428 - Pnap_0515 - hypothetical protein 510 60.74 0 544596..545540 - 314 121603429 - Pnap_0516 - PP-loop domain-containing protein 511 59.60 0 545546..545998 - 150 121603430 - Pnap_0517 - dihydroneopterin aldolase 512 68.10 0 545995..546762 - 255 121603431 - Pnap_0518 - short-chain dehydrogenase/reductase SDR 513 65.85 0 546835..547941 + 368 121603432 - Pnap_0519 - hypothetical protein 514 59.50 0 548057..548335 + 92 121603433 - Pnap_0520 - hypothetical protein 515 64.93 0 548332..549600 + 422 121603434 - Pnap_0521 - HipA domain-containing protein 516 56.41 -1 549611..549805 + 64 121603435 - Pnap_0522 - hypothetical protein 517 60.46 0 549995..551251 + 418 121603436 - Pnap_0523 - extracellular solute-binding protein 518 65.44 0 551295..552680 - 461 121603437 - Pnap_0524 - alpha,alpha-trehalose-phosphate synthase (UDP-forming) 519 65.51 0 552677..554497 - 606 121603438 - Pnap_0525 - glycoside hydrolase 15-related 520 69.10 +1 554494..555273 - 259 121603439 - Pnap_0526 - HAD family hydrolase 521 67.92 0 555398..557479 - 693 121603440 - Pnap_0527 - lytic transglycosylase, catalytic 522 64.32 0 557489..558127 + 212 121603441 - Pnap_0528 - 5-formyltetrahydrofolate cyclo-ligase 523 66.67 0 558214..559257 - 347 121603442 - Pnap_0529 - LysR family transcriptional regulator 524 71.43 +1 559331..559792 + 153 121603443 - Pnap_0530 - hypothetical protein 525 64.44 0 559817..560221 - 134 121603444 - Pnap_0531 - BLUF domain-containing protein 526 64.26 0 560234..561064 + 276 121603445 - Pnap_0532 - cyclic nucleotide-binding protein 527 68.64 +1 561187..562608 + 473 121603446 - Pnap_0533 - UDP-N-acetylglucosamine pyrophosphorylase 528 61.90 0 563289..563771 - 160 121603447 - Pnap_0535 - AsnC family transcriptional regulator 529 66.72 0 563910..565766 + 618 121603448 - Pnap_0536 - D-fructose-6-phosphate amidotransferase 530 61.17 0 565874..566455 - 193 121603449 - Pnap_0537 - transposase, IS4 family protein 531 61.84 0 566895..567371 + 158 121603450 - Pnap_0538 - rhodanese domain-containing protein 532 65.91 0 567423..568349 + 308 121603451 - Pnap_0539 - Serine O-acetyltransferase 533 61.17 0 568346..568618 + 90 121603452 - Pnap_0540 - helix-turn-helix domain-containing protein 534 61.73 0 568766..570121 - 451 121603453 - Pnap_0541 - putative transposase 535 61.11 0 570177..571058 + 293 121603454 - Pnap_0542 - hypothetical protein 536 67.30 0 571073..573112 + 679 121603455 - Pnap_0543 - SufS subfamily cysteine desulfurase 537 65.07 0 573413..574417 + 334 121603456 - Pnap_0544 - aliphatic sulfonate ABC transporter periplasmic ligand-binding protein 538 68.49 +1 574425..575354 + 309 121603457 - Pnap_0545 - binding-protein-dependent transport systems inner membrane component 539 66.67 0 575351..576088 + 245 121603458 - Pnap_0546 - ABC transporter related 540 61.71 0 576594..577703 + 369 121603459 - Pnap_0547 - luciferase family protein 541 69.31 +1 577720..578931 + 403 121603460 - Pnap_0548 - long-chain-fatty-acid--CoA ligase-related protein 542 64.04 0 578946..579743 + 265 121603461 - Pnap_0549 - ABC transporter related 543 66.89 0 579765..580646 + 293 121603462 - Pnap_0550 - inner-membrane translocator 544 63.58 0 580659..581726 + 355 121603463 - Pnap_0551 - inner-membrane translocator 545 62.90 0 581780..583105 + 441 121603464 - Pnap_0552 - hypothetical protein 546 66.18 0 583193..584434 + 413 121603465 - Pnap_0553 - acyl-CoA dehydrogenase type 2 547 65.47 0 584498..585751 + 417 121603466 - Pnap_0554 - acyl-CoA dehydrogenase type 2 548 65.35 0 586010..586771 + 253 121603467 - Pnap_0555 - ABC transporter related 549 65.13 0 586812..587915 - 367 121603468 - Pnap_0556 - response regulator receiver protein 550 66.84 0 587932..589119 - 395 121603469 - Pnap_0557 - acyl-CoA dehydrogenase type 2 551 66.67 0 589201..589761 - 186 121603470 - Pnap_0558 - FMN reductase 552 54.79 -1 589793..590053 + 86 121603471 - Pnap_0559 - hypothetical protein 553 67.98 0 590500..591714 + 404 121603472 - Pnap_0560 - alkanesulfonate monooxygenase 554 66.43 0 591711..592562 + 283 121603473 - Pnap_0561 - amidohydrolase 2 555 63.84 0 592589..593578 + 329 121603474 - Pnap_0562 - cysteine synthase A 556 59.94 0 593702..594727 + 341 121603475 - Pnap_0563 - sulfate ABC transporter, periplasmic sulfate-binding protein 557 65.31 0 594770..595945 + 391 121603476 - Pnap_0564 - sigma-54 dependent trancsriptional regulator 558 69.42 +1 596039..598219 + 726 121603477 - Pnap_0565 - thiol:disulfide interchange protein, putative 559 71.58 +1 598299..599864 - 521 121603478 - Pnap_0566 - RND efflux system outer membrane lipoprotein 560 69.57 +1 599861..601135 - 424 121603479 - Pnap_0567 - RND family efflux transporter MFP subunit 561 65.98 0 601160..604357 - 1065 121603480 - Pnap_0568 - acriflavin resistance protein 562 63.73 0 604587..605063 - 158 121603481 - Pnap_0569 - cytochrome c, class II 563 67.36 0 605150..606154 - 334 121603482 - Pnap_0570 - SMP-30/gluconolaconase/LRE domain-containing protein 564 63.55 0 606183..606791 - 202 121603483 - Pnap_0571 - redoxin domain-containing protein 565 66.08 0 606823..607506 - 227 121603484 - Pnap_0572 - cytochrome c, class I 566 59.18 0 607522..607935 - 137 121603485 - Pnap_0573 - hypothetical protein 567 65.70 0 607966..609417 - 483 121603486 - Pnap_0574 - hypothetical protein 568 63.64 0 609455..611803 - 782 121603487 - Pnap_0575 - hypothetical protein 569 63.37 0 612254..613768 + 504 121603488 - Pnap_0576 - hypothetical protein 62.80 MEAN 5.38 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.