IslandPathversion 1.0

IslandPath Analysis: Polaromonas naphthalenivorans CJ2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.80 STD DEV: 5.38
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291
4084 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
470	 64.98	0	495411..497423	+	670	121603389	-	Pnap_0475	-	carbamoyl-phosphate synthase L chain, ATP-binding
471	 66.24	0	497441..498370	+	309	121603390	-	Pnap_0476	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
472	 63.54	0	498375..499301	+	308	121603391	-	Pnap_0477	-	pyruvate carboxyltransferase
473	 65.47	0	499301..500053	+	250	121603392	-	Pnap_0478	-	YbaK/prolyl-tRNA synthetase associated region
474	 64.35	0	500050..500739	+	229	121603393	-	Pnap_0479	-	DSBA oxidoreductase
475	 63.82	0	500800..502626	+	608	121603394	-	Pnap_0480	-	cyclic nucleotide-binding protein
476	 64.40	0	502623..503285	+	220	121603395	-	Pnap_0481	-	DNA polymerase III subunit epsilon
477	 62.15	0	503441..503794	+	117	121603396	-	Pnap_0482	-	transport-associated
478	 55.08	-1	505881..506234	-	117	121603397	-	Pnap_0484	-	hypothetical protein
479	 60.82	0	506556..508214	+	552	121603398	-	Pnap_0485	-	major facilitator superfamily transporter
480	 61.90	0	508230..508733	+	167	121603399	-	Pnap_0486	-	hypothetical protein
481	 58.51	0	508744..509847	-	367	121603400	-	Pnap_0487	-	extracellular ligand-binding receptor
482	 67.07	0	510042..515939	+	1965	121603401	-	Pnap_0488	-	excinuclease ABC, A subunit
483	 62.28	0	516348..517784	+	478	121603402	-	Pnap_0489	-	S-adenosyl-L-homocysteine hydrolase
484	 65.00	0	517927..519003	+	358	121603403	-	Pnap_0490	-	ribosomal RNA methyltransferase RrmJ/FtsJ
485	 63.78	0	519013..519843	+	276	121603404	-	Pnap_0491	-	5,10-methylenetetrahydrofolate reductase
486	 70.01	+1	519843..520559	+	238	121603405	-	Pnap_0492	-	rare lipoprotein A
487	 62.82	0	520730..521353	+	207	121603406	-	Pnap_0493	-	hypothetical protein
488	 62.99	0	521356..522768	+	470	121603407	-	Pnap_0494	-	cytochrome bd ubiquinol oxidase, subunit I
489	 64.63	0	522761..523792	+	343	121603408	-	Pnap_0495	-	cytochrome bd ubiquinol oxidase, subunit II
490	 63.64	0	523803..524825	-	340	121603409	-	Pnap_0496	-	hypothetical protein
491	 65.60	0	524874..526469	-	531	121603410	-	Pnap_0497	-	regulator of RNA terminal phosphate cyclase
492	 62.80	0	526614..527906	+	430	121603411	-	Pnap_0498	-	hypothetical protein
493	 64.57	0	527926..529023	+	365	121603412	-	Pnap_0499	-	RNA-3'-phosphate cyclase
494	 56.08	-1	529265..529708	+	147	121603413	rplM	Pnap_0500	-	50S ribosomal protein L13
495	 60.81	0	529705..530097	+	130	121603414	-	Pnap_0501	-	ribosomal protein S9
496	 57.38	-1	530261..530626	+	121	121603415	-	Pnap_0502	-	iron-sulfur cluster insertion protein ErpA
497	 67.38	0	530809..533061	+	750	121603416	-	Pnap_0503	-	helicase c2
498	 66.40	0	533105..534244	-	379	121603417	anmK	Pnap_0504	-	anhydro-N-acetylmuramic acid kinase
499	 65.59	0	534281..535678	-	465	121603418	-	Pnap_0505	-	peptidase M23B
500	 63.58	0	535905..537137	+	410	121603419	-	Pnap_0506	-	tyrosyl-tRNA synthetase
501	 68.39	+1	537151..537615	+	154	121603420	-	Pnap_0507	-	D-tyrosyl-tRNA deacylase
502	 62.72	0	537696..538151	-	151	121603421	-	Pnap_0508	-	hypothetical protein
503	 65.51	0	538141..539178	-	345	121603422	-	Pnap_0509	-	PhoH family protein
504	 64.94	0	539239..539817	+	192	121603423	ruvA	Pnap_0510	-	Holliday junction DNA helicase motor protein
505	 46.17	-2	539830..540756	+	308	121603424	-	Pnap_0511	-	hypothetical protein
506	 65.36	0	540753..541823	+	356	121603425	ruvB	Pnap_0512	-	Holliday junction DNA helicase B
507	 67.34	0	542006..543196	-	396	121603426	-	Pnap_0513	-	putative threonine aldolase
508	 69.04	+1	543224..543898	-	224	121603427	-	Pnap_0514	-	phosphoglycerate mutase
509	 66.19	0	543948..544574	-	208	121603428	-	Pnap_0515	-	hypothetical protein
510	 60.74	0	544596..545540	-	314	121603429	-	Pnap_0516	-	PP-loop domain-containing protein
511	 59.60	0	545546..545998	-	150	121603430	-	Pnap_0517	-	dihydroneopterin aldolase
512	 68.10	0	545995..546762	-	255	121603431	-	Pnap_0518	-	short-chain dehydrogenase/reductase SDR
513	 65.85	0	546835..547941	+	368	121603432	-	Pnap_0519	-	hypothetical protein
514	 59.50	0	548057..548335	+	92	121603433	-	Pnap_0520	-	hypothetical protein
515	 64.93	0	548332..549600	+	422	121603434	-	Pnap_0521	-	HipA domain-containing protein
516	 56.41	-1	549611..549805	+	64	121603435	-	Pnap_0522	-	hypothetical protein
517	 60.46	0	549995..551251	+	418	121603436	-	Pnap_0523	-	extracellular solute-binding protein
518	 65.44	0	551295..552680	-	461	121603437	-	Pnap_0524	-	alpha,alpha-trehalose-phosphate synthase (UDP-forming)
519	 65.51	0	552677..554497	-	606	121603438	-	Pnap_0525	-	glycoside hydrolase 15-related
520	 69.10	+1	554494..555273	-	259	121603439	-	Pnap_0526	-	HAD family hydrolase
521	 67.92	0	555398..557479	-	693	121603440	-	Pnap_0527	-	lytic transglycosylase, catalytic
522	 64.32	0	557489..558127	+	212	121603441	-	Pnap_0528	-	5-formyltetrahydrofolate cyclo-ligase
523	 66.67	0	558214..559257	-	347	121603442	-	Pnap_0529	-	LysR family transcriptional regulator
524	 71.43	+1	559331..559792	+	153	121603443	-	Pnap_0530	-	hypothetical protein
525	 64.44	0	559817..560221	-	134	121603444	-	Pnap_0531	-	BLUF domain-containing protein
526	 64.26	0	560234..561064	+	276	121603445	-	Pnap_0532	-	cyclic nucleotide-binding protein
527	 68.64	+1	561187..562608	+	473	121603446	-	Pnap_0533	-	UDP-N-acetylglucosamine pyrophosphorylase
528	 61.90	0	563289..563771	-	160	121603447	-	Pnap_0535	-	AsnC family transcriptional regulator
529	 66.72	0	563910..565766	+	618	121603448	-	Pnap_0536	-	D-fructose-6-phosphate amidotransferase
530	 61.17	0	565874..566455	-	193	121603449	-	Pnap_0537	-	transposase, IS4 family protein
531	 61.84	0	566895..567371	+	158	121603450	-	Pnap_0538	-	rhodanese domain-containing protein
532	 65.91	0	567423..568349	+	308	121603451	-	Pnap_0539	-	Serine O-acetyltransferase
533	 61.17	0	568346..568618	+	90	121603452	-	Pnap_0540	-	helix-turn-helix domain-containing protein
534	 61.73	0	568766..570121	-	451	121603453	-	Pnap_0541	-	putative transposase
535	 61.11	0	570177..571058	+	293	121603454	-	Pnap_0542	-	hypothetical protein
536	 67.30	0	571073..573112	+	679	121603455	-	Pnap_0543	-	SufS subfamily cysteine desulfurase
537	 65.07	0	573413..574417	+	334	121603456	-	Pnap_0544	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
538	 68.49	+1	574425..575354	+	309	121603457	-	Pnap_0545	-	binding-protein-dependent transport systems inner membrane component
539	 66.67	0	575351..576088	+	245	121603458	-	Pnap_0546	-	ABC transporter related
540	 61.71	0	576594..577703	+	369	121603459	-	Pnap_0547	-	luciferase family protein
541	 69.31	+1	577720..578931	+	403	121603460	-	Pnap_0548	-	long-chain-fatty-acid--CoA ligase-related protein
542	 64.04	0	578946..579743	+	265	121603461	-	Pnap_0549	-	ABC transporter related
543	 66.89	0	579765..580646	+	293	121603462	-	Pnap_0550	-	inner-membrane translocator
544	 63.58	0	580659..581726	+	355	121603463	-	Pnap_0551	-	inner-membrane translocator
545	 62.90	0	581780..583105	+	441	121603464	-	Pnap_0552	-	hypothetical protein
546	 66.18	0	583193..584434	+	413	121603465	-	Pnap_0553	-	acyl-CoA dehydrogenase type 2
547	 65.47	0	584498..585751	+	417	121603466	-	Pnap_0554	-	acyl-CoA dehydrogenase type 2
548	 65.35	0	586010..586771	+	253	121603467	-	Pnap_0555	-	ABC transporter related
549	 65.13	0	586812..587915	-	367	121603468	-	Pnap_0556	-	response regulator receiver protein
550	 66.84	0	587932..589119	-	395	121603469	-	Pnap_0557	-	acyl-CoA dehydrogenase type 2
551	 66.67	0	589201..589761	-	186	121603470	-	Pnap_0558	-	FMN reductase
552	 54.79	-1	589793..590053	+	86	121603471	-	Pnap_0559	-	hypothetical protein
553	 67.98	0	590500..591714	+	404	121603472	-	Pnap_0560	-	alkanesulfonate monooxygenase
554	 66.43	0	591711..592562	+	283	121603473	-	Pnap_0561	-	amidohydrolase 2
555	 63.84	0	592589..593578	+	329	121603474	-	Pnap_0562	-	cysteine synthase A
556	 59.94	0	593702..594727	+	341	121603475	-	Pnap_0563	-	sulfate ABC transporter, periplasmic sulfate-binding protein
557	 65.31	0	594770..595945	+	391	121603476	-	Pnap_0564	-	sigma-54 dependent trancsriptional regulator
558	 69.42	+1	596039..598219	+	726	121603477	-	Pnap_0565	-	thiol:disulfide interchange protein, putative
559	 71.58	+1	598299..599864	-	521	121603478	-	Pnap_0566	-	RND efflux system outer membrane lipoprotein
560	 69.57	+1	599861..601135	-	424	121603479	-	Pnap_0567	-	RND family efflux transporter MFP subunit
561	 65.98	0	601160..604357	-	1065	121603480	-	Pnap_0568	-	acriflavin resistance protein
562	 63.73	0	604587..605063	-	158	121603481	-	Pnap_0569	-	cytochrome c, class II
563	 67.36	0	605150..606154	-	334	121603482	-	Pnap_0570	-	SMP-30/gluconolaconase/LRE domain-containing protein
564	 63.55	0	606183..606791	-	202	121603483	-	Pnap_0571	-	redoxin domain-containing protein
565	 66.08	0	606823..607506	-	227	121603484	-	Pnap_0572	-	cytochrome c, class I
566	 59.18	0	607522..607935	-	137	121603485	-	Pnap_0573	-	hypothetical protein
567	 65.70	0	607966..609417	-	483	121603486	-	Pnap_0574	-	hypothetical protein
568	 63.64	0	609455..611803	-	782	121603487	-	Pnap_0575	-	hypothetical protein
569	 63.37	0	612254..613768	+	504	121603488	-	Pnap_0576	-	hypothetical protein
62.80	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.