IslandPathversion 1.0

IslandPath Analysis: Polaromonas naphthalenivorans CJ2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.80 STD DEV: 5.38
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291
4084 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3904	 36.76	-2	4200273..4200710	+	145	121606823	-	Pnap_3935	-	hypothetical protein
3905	 43.80	-2	4200712..4200969	+	85	121606824	-	Pnap_3936	-	hypothetical protein
3906	 39.15	-2	4201258..4201842	-	194	121606825	-	Pnap_3937	-	hypothetical protein
3907	 46.84	-2	4202561..4203382	-	273	121606826	-	Pnap_3938	-	hypothetical protein
3908	 47.00	-2	4205401..4205700	-	99	121606827	-	Pnap_3939	-	histone-like nucleoid-structuring protein H-NS
3909	 29.38	-2	4206222..4206626	-	134	121606828	-	Pnap_3940	-	hypothetical protein
3910	 53.11	-1	4207877..4208053	+	58	121606829	-	Pnap_3941	-	molybdenum cofactor biosynthesis-like protein
3911	 65.09	0	4208075..4209595	-	506	121606830	-	Pnap_3942	-	O-antigen polymerase
3912	 45.77	-2	4209757..4210608	-	283	121606831	-	Pnap_3943	-	FimB
3913	 38.32	-2	4210636..4211136	-	166	121606832	-	Pnap_3944	-	fimbrial protein pilin
3914	 52.10	-1	4211606..4212106	-	166	121606833	-	Pnap_3945	-	fimbrial protein pilin
3915	 50.59	-2	4212231..4212740	-	169	121606834	-	Pnap_3946	-	fimbrial protein pilin
3916	 56.12	-1	4213602..4213895	-	97	121606835	-	Pnap_3948	-	DNA polymerase beta subunit
3917	 58.91	0	4214104..4214670	-	188	121606836	-	Pnap_3949	-	FHA domain-containing protein
3918	 59.03	0	4214710..4215495	-	261	121606837	-	Pnap_3950	-	protein phosphatase 2C domain-containing protein
3919	 59.97	0	4215649..4216350	-	233	121606838	-	Pnap_3951	-	integral membrane protein TerC
3920	 61.87	0	4216463..4217359	-	298	121606839	-	Pnap_3952	-	succinyl-CoA synthetase subunit alpha
3921	 61.33	0	4217377..4218537	-	386	121606840	sucC	Pnap_3953	-	succinyl-CoA synthetase subunit beta
3922	 65.13	0	4218773..4219684	+	303	121606841	-	Pnap_3954	-	N-acetyl-gamma-glutamyl-phosphate reductase
3923	 66.67	0	4219796..4220302	-	168	121606842	-	Pnap_3955	-	regulatory protein RecX
3924	 63.55	0	4220381..4221535	-	384	121606843	-	Pnap_3956	-	recA protein
3925	 69.08	+1	4221724..4222221	+	165	121606844	-	Pnap_3957	-	MarR family transcriptional regulator
3926	 67.56	0	4222366..4223040	+	224	121606845	-	Pnap_3958	-	two component transcriptional regulator
3927	 65.91	0	4223057..4224502	+	481	121606846	-	Pnap_3959	-	integral membrane sensor signal transduction histidine kinase
3928	 64.12	0	4224633..4225574	+	313	121606847	-	Pnap_3960	-	peptidase C26
3929	 68.23	+1	4225808..4228039	+	743	121606848	-	Pnap_3961	-	regulatory protein, putative
3930	 71.24	+1	4228036..4229019	+	327	121606849	-	Pnap_3962	-	ApbE family lipoprotein
3931	 64.92	0	4229131..4232103	-	990	121606850	-	Pnap_3963	-	DNA topoisomerase III
3932	 63.86	0	4232301..4232834	+	177	121606851	-	Pnap_3964	-	nuclear protein SET
3933	 71.31	+1	4232842..4233768	+	308	121606852	-	Pnap_3965	-	biotin--acetyl-CoA-carboxylase ligase
3934	 69.86	+1	4233762..4234451	+	229	121606853	-	Pnap_3966	-	putative signal peptide protein
3935	 69.80	+1	4234547..4235185	-	212	121606854	-	Pnap_3967	-	esterase YpfH
3936	 62.68	0	4235411..4235887	+	158	121606855	-	Pnap_3968	-	peptidylprolyl isomerase, FKBP-type
3937	 63.92	0	4236077..4236367	+	96	121606856	-	Pnap_3969	-	hypothetical protein
3938	 69.59	+1	4236402..4237598	+	398	121606857	-	Pnap_3970	-	NnrS family protein
3939	 54.83	-1	4237858..4238178	+	106	121606858	-	Pnap_3971	-	hypothetical protein
3940	 68.60	+1	4238250..4238714	-	154	121606859	-	Pnap_3972	-	hypothetical protein
3941	 64.17	0	4238977..4239858	+	293	121606860	-	Pnap_3973	-	tolA protein
3942	 64.58	0	4240020..4241843	+	607	121606861	-	Pnap_3974	-	hypothetical protein
3943	 39.35	-2	4241850..4242779	+	309	121606862	-	Pnap_3975	-	hypothetical protein
3944	 41.32	-2	4242776..4244515	+	579	121606863	-	Pnap_3976	-	hypothetical protein
3945	 58.33	0	4244727..4245302	-	191	121606864	-	Pnap_3977	-	hypothetical protein
3946	 59.75	0	4245303..4245779	-	158	121606865	-	Pnap_3978	-	DNA binding domain-containing protein
3947	 55.43	-1	4246000..4246275	+	91	121606866	-	Pnap_3979	-	hypothetical protein
3948	 67.64	0	4246576..4247802	+	408	121606867	-	Pnap_3980	-	filamentation induced by cAMP protein Fic
3949	 64.17	0	4248627..4248947	+	106	121606868	-	Pnap_3982	-	hypothetical protein
3950	 60.24	0	4249222..4249641	+	139	121606869	-	Pnap_3983	-	hypothetical protein
3951	 65.36	0	4249744..4250511	+	255	121606870	-	Pnap_3984	-	glutathione S-transferase domain-containing protein
3952	 66.35	0	4250533..4251171	-	212	121606871	-	Pnap_3985	-	methyltransferase type 11
3953	 64.98	0	4251561..4252391	+	276	121606872	-	Pnap_3986	-	transglutaminase domain-containing protein
3954	 66.76	0	4252471..4254627	-	718	121606873	-	Pnap_3987	-	putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane
3955	 71.36	+1	4254750..4255964	+	404	121606874	-	Pnap_3988	-	short-chain dehydrogenase/reductase SDR
3956	 69.86	+1	4256132..4256914	-	260	121606875	-	Pnap_3989	-	short-chain dehydrogenase/reductase SDR
3957	 67.45	0	4257077..4257973	+	298	121606876	-	Pnap_3990	-	LysR family transcriptional regulator
3958	 63.46	0	4258147..4258614	+	155	121606877	-	Pnap_3991	-	3-demethylubiquinone-9 3-methyltransferase
3959	 68.28	+1	4258697..4259068	-	123	121606878	-	Pnap_3992	-	triple helix repeat-containing collagen
3960	 69.39	+1	4259358..4260458	+	366	121606879	-	Pnap_3993	-	pirin domain-containing protein
3961	 59.18	0	4260639..4261079	+	146	121606880	-	Pnap_3994	-	response regulator receiver protein
3962	 65.57	0	4261305..4262036	+	243	121606881	-	Pnap_3995	-	TetR family transcriptional regulator
3963	 64.88	0	4262110..4262556	+	148	121606882	-	Pnap_3996	-	3-dehydroquinate dehydratase
3964	 66.14	0	4262581..4263339	-	252	121606883	-	Pnap_3997	-	hypothetical protein
3965	 60.49	0	4263776..4264228	+	150	121606884	-	Pnap_4000	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
3966	 71.22	+1	4264289..4266526	-	745	121606885	-	Pnap_4001	-	heavy metal translocating P-type ATPase
3967	 69.72	+1	4266583..4267041	+	152	121606886	-	Pnap_4002	-	MerR family transcriptional regulator
3968	 69.16	+1	4267070..4268272	-	400	121606887	-	Pnap_4003	-	major facilitator superfamily transporter
3969	 70.27	+1	4268421..4269308	+	295	121606888	-	Pnap_4004	-	LysR family transcriptional regulator
3970	 69.54	+1	4269356..4270468	+	370	121606889	-	Pnap_4005	-	hypothetical protein
3971	 64.14	0	4270757..4270993	-	78	121606890	-	Pnap_4006	-	hypothetical protein
3972	 65.96	0	4271140..4272414	+	424	121606891	-	Pnap_4007	-	cytosine deaminase
3973	 63.35	0	4272489..4273151	-	220	121606892	-	Pnap_4008	-	transposase
3974	 59.70	0	4273148..4273621	-	157	121606893	-	Pnap_4009	-	transposase
3975	 52.15	-1	4273692..4274552	+	286	121606894	-	Pnap_4010	-	hypothetical protein
3976	 71.62	+1	4274678..4276150	+	490	121606895	-	Pnap_4011	-	exoribonuclease II
3977	 69.20	+1	4276274..4276549	+	91	121606896	-	Pnap_4012	-	hypothetical protein
3978	 67.35	0	4276806..4278422	+	538	121606897	-	Pnap_4013	-	polypeptide-transport-associated domain-containing protein
3979	 68.20	+1	4278440..4281310	+	956	121606898	-	Pnap_4014	-	filamentous haemagglutinin outer membrane protein
3980	 65.61	0	4281323..4282174	+	283	121606899	-	Pnap_4015	-	hypothetical protein
3981	 70.96	+1	4282221..4283174	-	317	121606900	-	Pnap_4016	-	2-dehydropantoate 2-reductase
3982	 59.05	0	4283305..4283619	+	104	121606901	-	Pnap_4017	-	hypothetical protein
3983	 64.80	0	4283623..4283943	+	106	121606902	-	Pnap_4018	-	putative transcriptional regulator
3984	 70.53	+1	4284159..4285505	+	448	121606903	-	Pnap_4019	-	putative oxidoreductase
3985	 66.21	0	4285556..4286863	+	435	121606904	-	Pnap_4020	-	dihydropyrimidine dehydrogenase
3986	 66.32	0	4286928..4288373	+	481	121606905	-	Pnap_4021	-	dihydropyrimidinase
3987	 67.54	0	4288398..4289654	+	418	121606906	-	Pnap_4022	-	amidase
3988	 51.91	-2	4289768..4291231	+	487	121606907	-	Pnap_4023	-	hypothetical protein
3989	 52.54	-1	4291549..4291725	+	58	121606908	-	Pnap_4024	-	hypothetical protein
3990	 68.48	+1	4292306..4292692	+	128	121606909	-	Pnap_4025	-	globin family protein
3991	 66.93	0	4292732..4293106	-	124	121606910	-	Pnap_4026	-	hypothetical protein
3992	 57.20	-1	4293501..4293986	-	161	121606911	-	Pnap_4027	-	calcium/calmodulin dependent protein kinase II association-domain-containing protein
3993	 64.03	0	4294144..4294674	-	176	121606912	-	Pnap_4028	-	3-demethylubiquinone-9 3-methyltransferase
3994	 71.79	+1	4294900..4296168	-	422	121606913	-	Pnap_4029	-	cytochrome P450
3995	 68.69	+1	4296168..4297205	-	345	121606914	-	Pnap_4030	-	biotin synthase
3996	 70.40	+1	4297239..4297961	-	240	121606915	-	Pnap_4031	-	dethiobiotin synthase
3997	 70.56	+1	4297958..4299190	-	410	121606916	-	Pnap_4032	-	8-amino-7-oxononanoate synthase
3998	 67.51	0	4300919..4301395	-	158	121606917	-	Pnap_4034	-	putative transposase of insertion sequence ISRm10-1
3999	 69.93	+1	4301415..4301873	-	152	121606918	-	Pnap_4035	-	hypothetical protein
4000	 57.61	0	4301949..4302224	-	91	121606919	-	Pnap_4036	-	hypothetical protein
4001	 69.24	+1	4302526..4303185	-	219	121606920	-	Pnap_4037	-	TetR family transcriptional regulator
4002	 67.67	0	4303280..4304275	-	331	121606921	-	Pnap_4038	-	LysR family transcriptional regulator
4003	 65.78	0	4304383..4305732	+	449	121606922	-	Pnap_4039	-	beta alanine--pyruvate transaminase
62.80	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.