IslandPathversion 1.0

IslandPath Analysis: Polaromonas naphthalenivorans CJ2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.80 STD DEV: 5.38
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291
4084 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3867	 69.00	+1	4159773..4162562	+	929	121606786	-	Pnap_3898	-	(glutamate--ammonia-ligase) adenylyltransferase
3868	 63.58	0	4162673..4163416	+	247	121606787	-	Pnap_3899	-	TetR family transcriptional regulator
3869	 74.10	+2	4163413..4164879	+	488	121606788	-	Pnap_3900	-	RND efflux system outer membrane lipoprotein
3870	 69.10	+1	4164947..4166137	+	396	121606789	-	Pnap_3901	-	RND family efflux transporter MFP subunit
3871	 67.43	0	4166134..4169268	+	1044	121606790	-	Pnap_3902	-	acriflavin resistance protein
3872	 50.39	-2	4169319..4169576	+	85	121606791	-	Pnap_3903	-	hypothetical protein
3873	 56.47	-1	4169816..4170070	-	84	121606792	-	Pnap_3904	-	addiction module antitoxin
3874	 62.70	0	4170067..4170318	-	83	121606793	-	Pnap_3905	-	prevent-host-death family protein
3875	 66.03	0	4170576..4171514	-	312	121606794	-	Pnap_3906	-	LysR family transcriptional regulator
3876	 67.66	0	4171613..4172620	+	335	121606795	-	Pnap_3907	-	hypothetical protein
3877	 70.71	+1	4172617..4173705	+	362	121606796	-	Pnap_3908	-	iron-containing alcohol dehydrogenase
3878	 64.26	0	4173805..4174800	+	331	121606797	-	Pnap_3909	-	alcohol dehydrogenase
3879	 67.88	0	4174921..4175415	-	164	121606798	-	Pnap_3910	-	rfaE bifunctional protein
3880	 62.76	0	4175412..4176281	-	289	121606799	-	Pnap_3911	-	hypothetical protein
3881	 62.63	0	4176514..4177083	+	189	121606800	-	Pnap_3912	-	glutathione peroxidase
3882	 62.28	0	4177416..4178030	-	204	121606801	-	Pnap_3913	-	glutathione S-transferase domain-containing protein
3883	 62.33	0	4178115..4179566	+	483	121606802	-	Pnap_3914	-	adenylosuccinate lyase
3884	 65.71	0	4179637..4179948	-	103	121606803	-	Pnap_3915	-	hypothetical protein
3885	 65.45	0	4180055..4180465	-	136	121606804	-	Pnap_3916	-	hypothetical protein
3886	 65.97	0	4180921..4181637	+	238	121606805	-	Pnap_3917	-	integral membrane protein TerC
3887	 63.56	0	4181690..4182043	+	117	121606806	-	Pnap_3918	-	membrane protein of unknown function
3888	 70.36	+1	4181999..4183648	-	549	121606807	-	Pnap_3919	-	peptidase M48, Ste24p
3889	 60.92	0	4183729..4184250	+	173	121606808	-	Pnap_3920	-	molybdenum cofactor biosynthesis protein C
3890	 49.59	-2	4184382..4185365	+	327	121606809	-	Pnap_3921	-	phage integrase family protein
3891	 52.88	-1	4185753..4186064	-	103	121606810	-	Pnap_3922	-	hypothetical protein
3892	 51.89	-2	4186476..4186793	+	105	121606811	-	Pnap_3923	-	hypothetical protein
3893	 52.67	-1	4186852..4187880	+	342	121606812	-	Pnap_3924	-	DNA/RNA non-specific endonuclease
3894	 36.15	-2	4188287..4189954	+	555	121606813	-	Pnap_3925	-	hypothetical protein
3895	 36.41	-2	4189958..4191550	+	530	121606814	-	Pnap_3926	-	DNA-directed DNA polymerase
3896	 41.55	-2	4191955..4192380	-	141	121606815	-	Pnap_3927	-	hypothetical protein
3897	 49.83	-2	4192453..4193028	-	191	121606816	-	Pnap_3928	-	resolvase domain-containing protein
3898	 28.46	-2	4193291..4193680	+	129	121606817	-	Pnap_3929	-	hypothetical protein
3899	 40.13	-2	4193869..4195266	+	465	121606818	-	Pnap_3930	-	hypothetical protein
3900	 32.42	-2	4195253..4195690	+	145	121606819	-	Pnap_3931	-	hypothetical protein
3901	 41.37	-2	4195904..4196413	+	169	121606820	-	Pnap_3932	-	hypothetical protein
3902	 38.29	-2	4196732..4197397	+	221	121606821	-	Pnap_3933	-	hypothetical protein
3903	 47.55	-2	4199081..4199467	+	128	121606822	-	Pnap_3934	-	hypothetical protein
3904	 36.76	-2	4200273..4200710	+	145	121606823	-	Pnap_3935	-	hypothetical protein
3905	 43.80	-2	4200712..4200969	+	85	121606824	-	Pnap_3936	-	hypothetical protein
3906	 39.15	-2	4201258..4201842	-	194	121606825	-	Pnap_3937	-	hypothetical protein
3907	 46.84	-2	4202561..4203382	-	273	121606826	-	Pnap_3938	-	hypothetical protein
3908	 47.00	-2	4205401..4205700	-	99	121606827	-	Pnap_3939	-	histone-like nucleoid-structuring protein H-NS
3909	 29.38	-2	4206222..4206626	-	134	121606828	-	Pnap_3940	-	hypothetical protein
3910	 53.11	-1	4207877..4208053	+	58	121606829	-	Pnap_3941	-	molybdenum cofactor biosynthesis-like protein
3911	 65.09	0	4208075..4209595	-	506	121606830	-	Pnap_3942	-	O-antigen polymerase
3912	 45.77	-2	4209757..4210608	-	283	121606831	-	Pnap_3943	-	FimB
3913	 38.32	-2	4210636..4211136	-	166	121606832	-	Pnap_3944	-	fimbrial protein pilin
3914	 52.10	-1	4211606..4212106	-	166	121606833	-	Pnap_3945	-	fimbrial protein pilin
3915	 50.59	-2	4212231..4212740	-	169	121606834	-	Pnap_3946	-	fimbrial protein pilin
3916	 56.12	-1	4213602..4213895	-	97	121606835	-	Pnap_3948	-	DNA polymerase beta subunit
3917	 58.91	0	4214104..4214670	-	188	121606836	-	Pnap_3949	-	FHA domain-containing protein
3918	 59.03	0	4214710..4215495	-	261	121606837	-	Pnap_3950	-	protein phosphatase 2C domain-containing protein
3919	 59.97	0	4215649..4216350	-	233	121606838	-	Pnap_3951	-	integral membrane protein TerC
3920	 61.87	0	4216463..4217359	-	298	121606839	-	Pnap_3952	-	succinyl-CoA synthetase subunit alpha
3921	 61.33	0	4217377..4218537	-	386	121606840	sucC	Pnap_3953	-	succinyl-CoA synthetase subunit beta
3922	 65.13	0	4218773..4219684	+	303	121606841	-	Pnap_3954	-	N-acetyl-gamma-glutamyl-phosphate reductase
3923	 66.67	0	4219796..4220302	-	168	121606842	-	Pnap_3955	-	regulatory protein RecX
3924	 63.55	0	4220381..4221535	-	384	121606843	-	Pnap_3956	-	recA protein
3925	 69.08	+1	4221724..4222221	+	165	121606844	-	Pnap_3957	-	MarR family transcriptional regulator
3926	 67.56	0	4222366..4223040	+	224	121606845	-	Pnap_3958	-	two component transcriptional regulator
3927	 65.91	0	4223057..4224502	+	481	121606846	-	Pnap_3959	-	integral membrane sensor signal transduction histidine kinase
3928	 64.12	0	4224633..4225574	+	313	121606847	-	Pnap_3960	-	peptidase C26
3929	 68.23	+1	4225808..4228039	+	743	121606848	-	Pnap_3961	-	regulatory protein, putative
3930	 71.24	+1	4228036..4229019	+	327	121606849	-	Pnap_3962	-	ApbE family lipoprotein
3931	 64.92	0	4229131..4232103	-	990	121606850	-	Pnap_3963	-	DNA topoisomerase III
3932	 63.86	0	4232301..4232834	+	177	121606851	-	Pnap_3964	-	nuclear protein SET
3933	 71.31	+1	4232842..4233768	+	308	121606852	-	Pnap_3965	-	biotin--acetyl-CoA-carboxylase ligase
3934	 69.86	+1	4233762..4234451	+	229	121606853	-	Pnap_3966	-	putative signal peptide protein
3935	 69.80	+1	4234547..4235185	-	212	121606854	-	Pnap_3967	-	esterase YpfH
3936	 62.68	0	4235411..4235887	+	158	121606855	-	Pnap_3968	-	peptidylprolyl isomerase, FKBP-type
3937	 63.92	0	4236077..4236367	+	96	121606856	-	Pnap_3969	-	hypothetical protein
3938	 69.59	+1	4236402..4237598	+	398	121606857	-	Pnap_3970	-	NnrS family protein
3939	 54.83	-1	4237858..4238178	+	106	121606858	-	Pnap_3971	-	hypothetical protein
3940	 68.60	+1	4238250..4238714	-	154	121606859	-	Pnap_3972	-	hypothetical protein
3941	 64.17	0	4238977..4239858	+	293	121606860	-	Pnap_3973	-	tolA protein
3942	 64.58	0	4240020..4241843	+	607	121606861	-	Pnap_3974	-	hypothetical protein
3943	 39.35	-2	4241850..4242779	+	309	121606862	-	Pnap_3975	-	hypothetical protein
3944	 41.32	-2	4242776..4244515	+	579	121606863	-	Pnap_3976	-	hypothetical protein
3945	 58.33	0	4244727..4245302	-	191	121606864	-	Pnap_3977	-	hypothetical protein
3946	 59.75	0	4245303..4245779	-	158	121606865	-	Pnap_3978	-	DNA binding domain-containing protein
3947	 55.43	-1	4246000..4246275	+	91	121606866	-	Pnap_3979	-	hypothetical protein
3948	 67.64	0	4246576..4247802	+	408	121606867	-	Pnap_3980	-	filamentation induced by cAMP protein Fic
3949	 64.17	0	4248627..4248947	+	106	121606868	-	Pnap_3982	-	hypothetical protein
3950	 60.24	0	4249222..4249641	+	139	121606869	-	Pnap_3983	-	hypothetical protein
3951	 65.36	0	4249744..4250511	+	255	121606870	-	Pnap_3984	-	glutathione S-transferase domain-containing protein
3952	 66.35	0	4250533..4251171	-	212	121606871	-	Pnap_3985	-	methyltransferase type 11
3953	 64.98	0	4251561..4252391	+	276	121606872	-	Pnap_3986	-	transglutaminase domain-containing protein
3954	 66.76	0	4252471..4254627	-	718	121606873	-	Pnap_3987	-	putative D--3-hydroxybutyrate oligomer hydrolase lipoprotein transmembrane
3955	 71.36	+1	4254750..4255964	+	404	121606874	-	Pnap_3988	-	short-chain dehydrogenase/reductase SDR
3956	 69.86	+1	4256132..4256914	-	260	121606875	-	Pnap_3989	-	short-chain dehydrogenase/reductase SDR
3957	 67.45	0	4257077..4257973	+	298	121606876	-	Pnap_3990	-	LysR family transcriptional regulator
3958	 63.46	0	4258147..4258614	+	155	121606877	-	Pnap_3991	-	3-demethylubiquinone-9 3-methyltransferase
3959	 68.28	+1	4258697..4259068	-	123	121606878	-	Pnap_3992	-	triple helix repeat-containing collagen
3960	 69.39	+1	4259358..4260458	+	366	121606879	-	Pnap_3993	-	pirin domain-containing protein
3961	 59.18	0	4260639..4261079	+	146	121606880	-	Pnap_3994	-	response regulator receiver protein
3962	 65.57	0	4261305..4262036	+	243	121606881	-	Pnap_3995	-	TetR family transcriptional regulator
3963	 64.88	0	4262110..4262556	+	148	121606882	-	Pnap_3996	-	3-dehydroquinate dehydratase
3964	 66.14	0	4262581..4263339	-	252	121606883	-	Pnap_3997	-	hypothetical protein
3965	 60.49	0	4263776..4264228	+	150	121606884	-	Pnap_4000	-	pyridoxamine 5'-phosphate oxidase-related, FMN-binding
3966	 71.22	+1	4264289..4266526	-	745	121606885	-	Pnap_4001	-	heavy metal translocating P-type ATPase
62.80	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.