IslandPathversion 1.0

IslandPath Analysis: Polaromonas naphthalenivorans CJ2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.80 STD DEV: 5.38
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291
4084 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3642	 64.17	0	3905089..3906210	+	373	121606561	-	Pnap_3673	-	hypothetical protein
3643	 74.67	+2	3906234..3906908	+	224	121606562	-	Pnap_3674	-	hypothetical protein
3644	 68.52	+1	3907016..3907879	+	287	121606563	-	Pnap_3675	-	methyltransferase type 11
3645	 71.46	+1	3908012..3910912	-	966	121606564	-	Pnap_3676	-	putative chaperone protein, HscA/DnaK
3646	 70.79	+1	3910977..3912890	-	637	121606565	-	Pnap_3677	-	putative molecular chaperone protein HspA/DnaK
3647	 68.61	+1	3912887..3913453	-	188	121606566	-	Pnap_3678	-	hypothetical protein
3648	 61.03	0	3914029..3915252	+	407	121606567	-	Pnap_3679	-	extracellular ligand-binding receptor
3649	 62.91	0	3915375..3917612	-	745	121606568	-	Pnap_3680	-	isocitrate dehydrogenase, NADP-dependent
3650	 58.95	0	3917942..3918226	+	94	121606569	-	Pnap_3681	-	SpoVT/AbrB domain-containing protein
3651	 63.70	0	3918230..3918634	+	134	121606570	-	Pnap_3682	-	PilT domain-containing protein
3652	 66.21	0	3918792..3920984	-	730	121606571	-	Pnap_3683	-	malate synthase G
3653	 65.20	0	3921089..3921838	-	249	121606572	-	Pnap_3684	-	haloacid dehalogenase, type II
3654	 69.93	+1	3922034..3924268	+	744	121606573	-	Pnap_3685	-	pyruvate carboxyltransferase
3655	 64.08	0	3924324..3925019	+	231	121606574	-	Pnap_3686	-	two component transcriptional regulator
3656	 66.37	0	3925016..3926383	+	455	121606575	-	Pnap_3687	-	integral membrane sensor signal transduction histidine kinase
3657	 64.85	0	3926429..3927475	-	348	121606576	-	Pnap_3688	-	aldo/keto reductase
3658	 62.43	0	3927720..3928970	+	416	121606577	-	Pnap_3689	-	extracellular solute-binding protein
3659	 63.05	0	3929003..3930190	+	395	121606578	-	Pnap_3690	-	maltoporin precursor
3660	 60.54	0	3930293..3931174	+	293	121606579	-	Pnap_3691	-	binding-protein-dependent transport systems inner membrane component
3661	 61.84	0	3931164..3932033	+	289	121606580	-	Pnap_3692	-	binding-protein-dependent transport systems inner membrane component
3662	 64.34	0	3932040..3933113	+	357	121606581	-	Pnap_3693	-	ABC transporter related
3663	 64.69	0	3933207..3934673	+	488	121606582	-	Pnap_3694	-	glucose-6-phosphate 1-dehydrogenase
3664	 67.26	0	3934728..3935735	+	335	121606583	-	Pnap_3695	-	glucokinase
3665	 60.15	0	3935812..3936072	+	86	121606584	-	Pnap_3696	-	hypothetical protein
3666	 69.77	+1	3936118..3937083	+	321	121606585	-	Pnap_3697	-	LysR family transcriptional regulator
3667	 71.23	+1	3937189..3937824	-	211	121606586	-	Pnap_3698	-	lysine exporter protein LysE/YggA
3668	 70.81	+1	3937968..3938861	+	297	121606587	-	Pnap_3699	-	chromosome replication initiation inhibitor protein
3669	 64.06	0	3939014..3939358	-	114	121606588	-	Pnap_3700	-	PsiF repeat-containing protein
3670	 65.53	0	3939548..3941224	+	558	121606589	argS	Pnap_3701	-	arginyl-tRNA synthetase
3671	 66.78	0	3941267..3942136	+	289	121606590	-	Pnap_3702	-	sporulation domain-containing protein
3672	 62.59	0	3942211..3942873	+	220	121606591	-	Pnap_3703	-	DSBA oxidoreductase
3673	 65.05	0	3943302..3944966	+	554	121606592	-	Pnap_3704	-	polypeptide-transport-associated domain-containing protein
3674	 69.26	+1	3945047..3948364	+	1105	121606593	-	Pnap_3705	-	filamentous haemagglutinin outer membrane protein
3675	 63.97	0	3948484..3949224	+	246	121606594	-	Pnap_3706	-	hypothetical protein
3676	 47.31	-2	3949373..3950488	+	371	121606595	-	Pnap_3707	-	glycosyl transferase family protein
3677	 67.44	0	3950655..3951299	+	214	121606596	-	Pnap_3708	-	OstA family protein
3678	 64.41	0	3951304..3952101	+	265	121606597	-	Pnap_3709	-	ABC transporter related
3679	 64.81	0	3952112..3953677	+	521	121606598	-	Pnap_3710	-	RNA polymerase, sigma 54 subunit, RpoN
3680	 67.80	0	3953825..3955240	+	471	121606599	-	Pnap_3711	-	putative RNA methylase
3681	 62.61	0	3955237..3955680	+	147	121606600	-	Pnap_3712	-	hypothetical protein
3682	 59.91	0	3955720..3956163	-	147	121606601	-	Pnap_3713	-	hypothetical protein
3683	 56.73	-1	3956210..3956551	-	113	121606602	-	Pnap_3714	-	hypothetical protein
3684	 60.47	0	3956983..3957369	-	128	121606603	-	Pnap_3715	-	PilT domain-containing protein
3685	 63.01	0	3957366..3957611	-	81	121606604	-	Pnap_3716	-	prevent-host-death family protein
3686	 66.57	0	3957654..3958721	-	355	121606605	-	Pnap_3717	-	cytidyltransferase-like protein
3687	 64.96	0	3958729..3960429	-	566	121606606	-	Pnap_3718	-	NAD+ synthetase
3688	 63.32	0	3960443..3961636	-	397	121606607	-	Pnap_3719	-	nicotinate phosphoribosyltransferase
3689	 67.57	0	3961670..3962551	-	293	121606608	-	Pnap_3720	-	hypothetical protein
3690	 66.67	0	3962683..3963375	+	230	121606609	-	Pnap_3721	-	NUDIX hydrolase
3691	 64.47	0	3963467..3964285	+	272	121606610	-	Pnap_3722	-	SecC motif-containing protein
3692	 49.06	-2	3964419..3964844	-	141	121606611	-	Pnap_3723	-	hypothetical protein
3693	 59.37	0	3965172..3966116	+	314	121606612	-	Pnap_3724	-	ISXo7 transposase
3694	 67.76	0	3966149..3966787	-	212	121606613	-	Pnap_3725	-	hypothetical protein
3695	 62.38	0	3967045..3968538	+	497	121606614	-	Pnap_3726	-	methyltransferase type 12
3696	 62.93	0	3968535..3969872	+	445	121606615	-	Pnap_3727	-	integral membrane sensor signal transduction histidine kinase
3697	 70.20	+1	3969886..3971073	+	395	121606616	-	Pnap_3728	-	response regulator receiver sensor signal transduction histidine kinase
3698	 68.93	+1	3971077..3972048	+	323	121606617	-	Pnap_3729	-	response regulator receiver protein
3699	 65.89	0	3972052..3972567	-	171	121606618	-	Pnap_3730	-	hypothetical protein
3700	 69.61	+1	3972724..3974526	+	600	121606619	-	Pnap_3731	-	arsenite-activated ATPase ArsA
3701	 70.33	+1	3975145..3975963	+	272	121606620	-	Pnap_3732	-	restriction endonuclease
3702	 59.38	0	3976150..3976341	+	63	121606621	-	Pnap_3733	-	4-oxalocrotonate tautomerase
3703	 65.91	0	3976376..3977173	+	265	121606622	-	Pnap_3734	-	glutamine amidotransferase, class-II
3704	 62.95	0	3977368..3978606	+	412	121606623	-	Pnap_3735	-	hypothetical protein
3705	 64.99	0	3978626..3979579	-	317	121606624	-	Pnap_3736	-	glutathione synthetase
3706	 70.78	+1	3980043..3981428	+	461	121606625	-	Pnap_3737	-	zinc finger SWIM domain-containing protein
3707	 71.08	+1	3981425..3983011	+	528	121606626	-	Pnap_3738	-	hypothetical protein
3708	 66.12	0	3983014..3984111	+	365	121606627	-	Pnap_3739	-	ATPase
3709	 69.74	+1	3984108..3986549	+	813	121606628	-	Pnap_3740	-	hypothetical protein
3710	 38.70	-2	3986657..3987010	+	117	121606629	-	Pnap_3741	-	hypothetical protein
3711	 68.73	+1	3987311..3988522	+	403	121606630	-	Pnap_3742	-	VWA containing CoxE family protein
3712	 59.74	0	3988633..3989094	+	153	121606631	-	Pnap_3743	-	hypothetical protein
3713	 62.33	0	3989113..3989757	+	214	121606632	-	Pnap_3744	-	FMN-binding negative transcriptional regulator
3714	 66.67	0	3989770..3990381	-	203	121606633	-	Pnap_3745	-	response regulator receiver protein
3715	 70.56	+1	3990405..3992384	-	659	121606634	-	Pnap_3746	-	multi-sensor signal transduction histidine kinase
3716	 68.08	0	3992400..3993464	+	354	121606635	-	Pnap_3747	-	TRAP dicarboxylate transporter, DctP subunit
3717	 61.99	0	3993618..3994964	+	448	121606636	-	Pnap_3748	-	C4-dicarboxylate transporter DctA
3718	 61.26	0	3995086..3996954	-	622	121606637	-	Pnap_3749	-	K+ potassium transporter
3719	 62.27	0	3997270..3998565	-	431	121606638	-	Pnap_3750	-	glutamate--cysteine ligase
3720	 64.27	0	3998795..4000087	-	430	121606639	-	Pnap_3751	-	gamma-glutamyl phosphate reductase
3721	 68.88	+1	4000110..4000652	-	180	121606640	-	Pnap_3752	-	hypothetical protein
3722	 69.14	+1	4000750..4001154	-	134	121606641	-	Pnap_3753	-	hypothetical protein
3723	 69.38	+1	4001219..4001881	-	220	121606642	-	Pnap_3754	-	nitroreductase
3724	 67.85	0	4001932..4005486	-	1184	121606643	-	Pnap_3755	-	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent
3725	 66.09	0	4005777..4006469	-	230	121606644	-	Pnap_3756	-	carbonate dehydratase
3726	 66.20	0	4006466..4007314	-	282	121606645	-	Pnap_3757	-	PpiC-type peptidyl-prolyl cis-trans isomerase
3727	 63.40	0	4007311..4008105	-	264	121606646	-	Pnap_3758	-	respiratory nitrate reductase, gamma subunit
3728	 66.53	0	4008102..4008809	-	235	121606647	-	Pnap_3759	-	nitrate reductase molybdenum cofactor assembly chaperone
3729	 62.82	0	4008813..4010345	-	510	121606648	-	Pnap_3760	-	nitrate reductase, beta subunit
3730	 63.35	0	4010342..4014172	-	1276	121606649	-	Pnap_3761	-	nitrate reductase, alpha subunit
3731	 62.89	0	4014217..4015884	-	555	121606650	-	Pnap_3762	-	nitrate/nitrite antiporter
3732	 62.76	0	4015913..4017166	-	417	121606651	-	Pnap_3763	-	major facilitator superfamily transporter
3733	 67.53	0	4017350..4018048	-	232	121606652	-	Pnap_3764	-	two component LuxR family transcriptional regulator
3734	 66.56	0	4018199..4020115	-	638	121606653	-	Pnap_3765	-	multi-sensor signal transduction histidine kinase
3735	 56.91	-1	4020475..4020720	+	81	121606654	-	Pnap_3766	-	hypothetical protein
3736	 52.13	-1	4020794..4021591	-	265	121606655	-	Pnap_3767	-	hypothetical protein
3737	 58.33	0	4021683..4021886	+	67	121606656	-	Pnap_3768	-	integrase
3738	 66.94	0	4022153..4023256	-	367	121606657	holA	Pnap_3769	-	DNA polymerase III subunit delta
3739	 63.38	0	4023280..4023705	-	141	121606658	-	Pnap_3770	-	AsnC family transcriptional regulator
3740	 63.21	0	4023833..4024930	+	365	121606659	-	Pnap_3771	-	ornithine cyclodeaminase
3741	 66.78	0	4024973..4025890	+	305	121606660	-	Pnap_3772	-	arginase
62.80	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.