IslandPathversion 1.0

IslandPath Analysis: Polaromonas naphthalenivorans CJ2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.80 STD DEV: 5.38
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291
4084 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3550	 64.81	0	3804273..3805244	-	323	121606469	-	Pnap_3581	-	hypothetical protein
3551	 64.67	0	3805325..3806374	+	349	121606470	-	Pnap_3582	-	serine/threonine protein kinase
3552	 65.80	0	3806480..3807514	+	344	121606471	-	Pnap_3583	-	ErfK/YbiS/YcfS/YnhG family protein
3553	 68.95	+1	3807558..3808082	+	174	121606472	-	Pnap_3584	-	peptidase M23B
3554	 70.59	+1	3808113..3808673	-	186	121606473	-	Pnap_3585	-	hypothetical protein
3555	 68.12	0	3808670..3810247	-	525	121606474	-	Pnap_3586	-	peptidoglycan binding domain-containing protein
3556	 62.38	0	3810387..3812276	-	629	121606475	-	Pnap_3587	-	heat shock protein 90
3557	 63.12	0	3812565..3813212	+	215	121606476	-	Pnap_3588	-	hypothetical protein
3558	 62.59	0	3813401..3814063	+	220	121606477	-	Pnap_3589	-	hypothetical protein
3559	 64.51	0	3814083..3814730	+	215	121606478	-	Pnap_3590	-	hypothetical protein
3560	 66.25	0	3814731..3815213	+	160	121606479	-	Pnap_3591	-	hypothetical protein
3561	 66.06	0	3815210..3816037	+	275	121606480	-	Pnap_3592	-	hypothetical protein
3562	 71.93	+1	3816034..3818121	+	695	121606481	-	Pnap_3593	-	hypothetical protein
3563	 71.70	+1	3818185..3819534	-	449	121606482	-	Pnap_3594	-	PGAP1 family protein
3564	 69.06	+1	3819672..3820508	-	278	121606483	-	Pnap_3595	-	pseudouridine synthase
3565	 70.25	+1	3820620..3821177	+	185	121606484	-	Pnap_3596	-	putative transmembrane protein
3566	 67.91	0	3821202..3821846	-	214	121606485	-	Pnap_3597	-	two component LuxR family transcriptional regulator
3567	 72.42	+1	3821843..3823162	-	439	121606486	-	Pnap_3598	-	integral membrane sensor signal transduction histidine kinase
3568	 67.48	0	3823415..3825883	+	822	121606487	-	Pnap_3599	-	TonB-dependent receptor
3569	 70.20	+1	3825987..3826694	-	235	121606488	-	Pnap_3600	-	two component transcriptional regulator
3570	 70.70	+1	3826704..3829403	-	899	121606489	-	Pnap_3601	-	osmosensitive K+ channel signal transduction histidine kinase
3571	 69.71	+1	3829422..3830012	-	196	121606490	-	Pnap_3602	-	potassium-transporting ATPase, C subunit
3572	 66.19	0	3830032..3832110	-	692	121606491	-	Pnap_3603	-	K+-transporting ATPase, B subunit
3573	 66.00	0	3832130..3833929	-	599	121606492	-	Pnap_3604	-	potassium-transporting ATPase, A subunit
3574	 64.97	0	3834319..3835026	-	235	121606493	-	Pnap_3605	-	CRP/FNR family transcriptional regulator
3575	 62.96	0	3835164..3836351	+	395	121606494	-	Pnap_3606	-	extracellular ligand-binding receptor
3576	 64.92	0	3836500..3838446	+	648	121606495	-	Pnap_3607	-	AMP-dependent synthetase and ligase
3577	 60.05	0	3838457..3839242	+	261	121606496	-	Pnap_3608	-	ABC transporter related
3578	 62.15	0	3839380..3840309	+	309	121606497	-	Pnap_3609	-	inner-membrane translocator
3579	 62.86	0	3840336..3841412	+	358	121606498	-	Pnap_3610	-	inner-membrane translocator
3580	 65.84	0	3841496..3842824	+	442	121606499	-	Pnap_3611	-	hypothetical protein
3581	 61.98	0	3842920..3843729	+	269	121606500	-	Pnap_3612	-	ABC transporter related
3582	 67.87	0	3843815..3845065	+	416	121606501	-	Pnap_3613	-	putative phenylacetate-CoA ligase
3583	 65.96	0	3845161..3846150	+	329	121606502	-	Pnap_3614	-	hypothetical protein
3584	 61.62	0	3846462..3846758	-	98	121606503	-	Pnap_3615	-	hypothetical protein
3585	 70.65	+1	3846894..3847646	+	250	121606504	-	Pnap_3616	-	hypothetical protein
3586	 66.95	0	3847744..3850212	+	822	121606505	-	Pnap_3617	-	salicylyl-CoA 5-hydroxylase
3587	 67.51	0	3850269..3850745	+	158	121606506	-	Pnap_3618	-	MarR family transcriptional regulator
3588	 66.08	0	3850742..3851596	+	284	121606507	-	Pnap_3619	-	enoyl-CoA hydratase
3589	 68.78	+1	3851624..3852805	+	393	121606508	-	Pnap_3620	-	acyl-CoA dehydrogenase domain-containing protein
3590	 67.71	0	3852802..3854430	+	542	121606509	-	Pnap_3621	-	AMP-dependent synthetase and ligase
3591	 60.09	0	3854427..3854867	+	146	121606510	-	Pnap_3622	-	thioesterase superfamily protein
3592	 66.16	0	3854864..3855259	+	131	121606511	-	Pnap_3623	-	endoribonuclease L-PSP
3593	 64.57	0	3855560..3855940	-	126	121606512	-	Pnap_3624	-	hypothetical protein
3594	 56.96	-1	3856726..3857034	+	102	121606513	-	Pnap_3625	-	hypothetical protein
3595	 59.31	0	3857378..3858097	+	239	121606514	-	Pnap_3626	-	CRP/FNR family transcriptional regulator
3596	 61.38	0	3858167..3858904	+	245	121606515	-	Pnap_3627	-	CRP/FNR family transcriptional regulator
3597	 60.64	0	3858924..3859802	-	292	121606516	-	Pnap_3628	-	two component LuxR family transcriptional regulator
3598	 60.44	0	3860408..3861082	-	224	121606517	-	Pnap_3629	-	two component Fis family transcriptional regulator
3599	 64.71	0	3861164..3863461	-	765	121606518	-	Pnap_3630	-	integral membrane sensor signal transduction histidine kinase
3600	 64.24	0	3863458..3864117	-	219	121606519	-	Pnap_3631	-	putative proline rich signal peptide protein
3601	 66.96	0	3864077..3865429	-	450	121606520	-	Pnap_3632	-	sun protein
3602	 63.62	0	3865706..3866197	+	163	121606521	-	Pnap_3633	-	transposase
3603	 60.61	0	3866305..3866535	+	76	121606522	-	Pnap_3634	-	transposase
3604	 69.93	+1	3866618..3867076	+	152	121606523	-	Pnap_3635	-	hypothetical protein
3605	 67.51	0	3867096..3867572	+	158	121606524	-	Pnap_3636	-	putative transposase of insertion sequence ISRm10-1
3606	 69.12	+1	3867580..3868599	-	339	121606525	-	Pnap_3637	-	peptidase M48, Ste24p
3607	 60.94	0	3868639..3869232	-	197	121606526	-	Pnap_3638	-	LemA family protein
3608	 61.23	0	3869514..3873728	-	1404	121606527	-	Pnap_3639	-	DNA-directed RNA polymerase subunit beta'
3609	 59.88	0	3873748..3877860	-	1370	121606528	-	Pnap_3640	-	DNA-directed RNA polymerase, beta subunit
3610	 55.82	-1	3878189..3878566	-	125	121606529	-	Pnap_3641	-	ribosomal protein L7/L12
3611	 57.25	-1	3878653..3879204	-	183	121606530	-	Pnap_3642	-	ribosomal protein L10
3612	 58.62	0	3879473..3880168	-	231	121606531	rplA	Pnap_3643	-	50S ribosomal protein L1
3613	 53.79	-1	3880165..3880599	-	144	121606532	-	Pnap_3644	-	ribosomal protein L11
3614	 51.26	-2	3880776..3881372	-	198	121606533	-	Pnap_3645	-	NusG antitermination factor
3615	 50.78	-2	3881372..3881755	-	127	121606534	secE	Pnap_3646	-	preprotein translocase subunit SecE
3616	 62.47	0	3881983..3883173	-	396	121606535	-	Pnap_3647	-	elongation factor Tu
3617	 64.91	0	3883841..3884578	-	245	121606536	-	Pnap_3648	-	uracil-DNA glycosylase
3618	 63.38	0	3884593..3885384	-	263	121606537	-	Pnap_3649	-	indole-3-glycerol-phosphate synthase
3619	 63.95	0	3885440..3886543	-	367	121606538	-	Pnap_3650	-	anthranilate phosphoribosyltransferase
3620	 68.76	+1	3886536..3887585	-	349	121606539	-	Pnap_3651	-	threonine aldolase
3621	 63.76	0	3887643..3888227	-	194	121606540	-	Pnap_3652	-	anthranilate synthase component II
3622	 63.17	0	3888231..3888545	-	104	121606541	-	Pnap_3653	-	chorismate mutase
3623	 63.60	0	3888549..3890048	-	499	121606542	-	Pnap_3654	-	anthranilate synthase component I
3624	 60.03	0	3890486..3891073	+	195	121606543	-	Pnap_3655	-	putative lipoprotein transmembrane
3625	 63.40	0	3891106..3891810	-	234	121606544	-	Pnap_3656	-	phosphoglycolate phosphatase
3626	 68.60	+1	3891980..3892651	-	223	121606545	-	Pnap_3657	-	ketopantoate reductase ApbA/PanE
3627	 63.15	0	3892712..3893251	-	179	121606546	-	Pnap_3658	-	cytochrome B561
3628	 53.88	-1	3893288..3893545	-	85	121606547	-	Pnap_3659	-	hypothetical protein
3629	 63.78	0	3893635..3894327	-	230	121606548	-	Pnap_3660	-	ribulose-phosphate 3-epimerase
3630	 63.17	0	3894409..3894837	+	142	121606549	apaG	Pnap_3661	-	ApaG
3631	 65.75	0	3894860..3896824	+	654	121606550	-	Pnap_3662	-	putative site-specific recombinase transmembrane protein
3632	 70.08	+1	3897027..3898286	+	419	121606551	-	Pnap_3663	-	sodium/hydrogen exchanger
3633	 64.49	0	3898276..3899421	+	381	121606552	-	Pnap_3664	-	carboxylate-amine ligase
3634	 69.97	+1	3899467..3900465	+	332	121606553	-	Pnap_3665	-	thiamine-monophosphate kinase
3635	 68.46	+1	3900475..3901032	+	185	121606554	-	Pnap_3666	-	phosphatidylglycerophosphatase A
3636	 67.05	0	3901029..3901550	+	173	121606555	-	Pnap_3667	-	CinA domain-containing protein
3637	 65.59	0	3901561..3901839	-	92	121606556	-	Pnap_3668	-	hypothetical protein
3638	 64.19	0	3901845..3902288	-	147	121606557	-	Pnap_3669	-	OsmC family protein
3639	 67.05	0	3902406..3903191	-	261	121606558	-	Pnap_3670	-	spermidine synthase-like protein
3640	 68.84	+1	3903243..3904025	-	260	121606559	-	Pnap_3671	-	CRP/FNR family transcriptional regulator
3641	 68.21	+1	3904068..3904457	-	129	121606560	-	Pnap_3672	-	hypothetical protein
3642	 64.17	0	3905089..3906210	+	373	121606561	-	Pnap_3673	-	hypothetical protein
3643	 74.67	+2	3906234..3906908	+	224	121606562	-	Pnap_3674	-	hypothetical protein
3644	 68.52	+1	3907016..3907879	+	287	121606563	-	Pnap_3675	-	methyltransferase type 11
3645	 71.46	+1	3908012..3910912	-	966	121606564	-	Pnap_3676	-	putative chaperone protein, HscA/DnaK
3646	 70.79	+1	3910977..3912890	-	637	121606565	-	Pnap_3677	-	putative molecular chaperone protein HspA/DnaK
3647	 68.61	+1	3912887..3913453	-	188	121606566	-	Pnap_3678	-	hypothetical protein
3648	 61.03	0	3914029..3915252	+	407	121606567	-	Pnap_3679	-	extracellular ligand-binding receptor
3649	 62.91	0	3915375..3917612	-	745	121606568	-	Pnap_3680	-	isocitrate dehydrogenase, NADP-dependent
62.80	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.