IslandPathversion 1.0

IslandPath Analysis: Polaromonas naphthalenivorans CJ2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.80 STD DEV: 5.38
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291
4084 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3475	 69.74	+1	3720967..3722202	+	411	121606394	-	Pnap_3505	-	Formyl-CoA transferase
3476	 65.82	0	3722199..3723146	+	315	121606395	-	Pnap_3506	-	pyruvate carboxyltransferase
3477	 63.36	0	3723143..3723535	+	130	121606396	-	Pnap_3507	-	glyoxalase/bleomycin resistance protein/dioxygenase
3478	 66.97	0	3723566..3724540	+	324	121606397	-	Pnap_3508	-	hypothetical protein
3479	 60.78	0	3724629..3724883	-	84	121606398	-	Pnap_3509	-	acyl-CoA-binding protein
3480	 68.39	+1	3725024..3726592	+	522	121606399	-	Pnap_3510	-	hypothetical protein
3481	 65.89	0	3726664..3727431	-	255	121606400	-	Pnap_3511	-	pantothenate kinase
3482	 64.57	0	3727528..3728196	-	222	121606401	-	Pnap_3512	-	regulatory protein, LuxR
3483	 62.13	0	3728283..3729560	+	425	121606402	-	Pnap_3513	-	integral membrane sensor signal transduction histidine kinase
3484	 64.63	0	3729570..3730598	+	342	121606403	-	Pnap_3514	-	response regulator receiver protein
3485	 65.38	0	3730601..3731848	-	415	121606404	-	Pnap_3515	-	hypothetical protein
3486	 65.31	0	3731994..3732434	-	146	121606405	-	Pnap_3516	-	rhodanese domain-containing protein
3487	 63.49	0	3732622..3733533	+	303	121606406	-	Pnap_3517	-	hypothetical protein
3488	 65.70	0	3733659..3734381	-	240	121606407	-	Pnap_3518	-	ABC transporter related
3489	 64.44	0	3734397..3736328	-	643	121606408	-	Pnap_3519	-	ABC transporter related
3490	 61.76	0	3736332..3737207	-	291	121606409	-	Pnap_3520	-	inner-membrane translocator
3491	 62.84	0	3737294..3738496	-	400	121606410	-	Pnap_3521	-	extracellular ligand-binding receptor
3492	 59.14	0	3738758..3740191	+	477	121606411	-	Pnap_3522	-	integral membrane sensor signal transduction histidine kinase
3493	 59.26	0	3740157..3740831	+	224	121606412	-	Pnap_3523	-	two component LuxR family transcriptional regulator
3494	 64.88	0	3741055..3744348	+	1097	121606413	-	Pnap_3524	-	methylmalonyl-CoA mutase, large subunit
3495	 59.26	0	3744469..3744630	-	53	121606414	-	Pnap_3525	-	hypothetical protein
3496	 63.08	0	3744722..3745837	-	371	121606415	-	Pnap_3526	-	hypothetical protein
3497	 62.66	0	3746028..3746801	+	257	121606416	-	Pnap_3527	-	ABC transporter related
3498	 65.25	0	3746804..3747508	+	234	121606417	-	Pnap_3528	-	ABC transporter related
3499	 62.98	0	3747586..3748779	+	397	121606418	-	Pnap_3529	-	extracellular ligand-binding receptor
3500	 64.29	0	3748864..3749748	+	294	121606419	-	Pnap_3530	-	inner-membrane translocator
3501	 63.25	0	3749753..3750775	+	340	121606420	-	Pnap_3531	-	inner-membrane translocator
3502	 63.25	0	3751272..3752324	+	350	121606421	-	Pnap_3532	-	porin
3503	 64.71	0	3752502..3753269	-	255	121606422	-	Pnap_3533	-	ABC transporter related
3504	 65.20	0	3753282..3754169	-	295	121606423	-	Pnap_3534	-	ABC transporter related
3505	 68.66	+1	3754181..3755083	-	300	121606424	-	Pnap_3535	-	binding-protein-dependent transport systems inner membrane component
3506	 64.89	0	3755080..3756147	-	355	121606425	-	Pnap_3536	-	binding-protein-dependent transport systems inner membrane component
3507	 63.67	0	3756188..3757858	-	556	121606426	-	Pnap_3537	-	extracellular solute-binding protein
3508	 63.67	0	3757843..3759045	-	400	121606427	-	Pnap_3538	-	mandelate racemase/muconate lactonizing protein
3509	 63.98	0	3759311..3760093	+	260	121606428	-	Pnap_3539	-	regulatory protein GntR, HTH
3510	 51.57	-2	3760209..3760844	-	211	121606429	-	Pnap_3540	-	hypothetical protein
3511	 52.22	-1	3760847..3762127	-	426	121606430	-	Pnap_3541	-	ATPase-like protein
3512	 65.46	0	3762205..3763608	-	467	121606431	-	Pnap_3542	-	ATP-dependent RNA helicase DbpA
3513	 68.00	0	3763736..3764557	+	273	121606432	-	Pnap_3543	-	phosphoesterase, PA-phosphatase related
3514	 66.37	0	3764633..3766000	+	455	121606433	-	Pnap_3544	-	pyridine nucleotide-disulphide oxidoreductase dimerisation region
3515	 66.60	0	3766053..3767573	+	506	121606434	-	Pnap_3545	-	AMP nucleosidase
3516	 72.32	+1	3768484..3769917	+	477	121606435	-	Pnap_3547	-	RND efflux system outer membrane lipoprotein
3517	 69.75	+1	3769971..3771299	+	442	121606436	-	Pnap_3548	-	RND family efflux transporter MFP subunit
3518	 69.53	+1	3771296..3772063	+	255	121606437	-	Pnap_3549	-	ABC transporter related
3519	 67.91	0	3772063..3773271	+	402	121606438	-	Pnap_3550	-	hypothetical protein
3520	 54.36	-1	3773362..3773556	-	64	121606439	-	Pnap_3551	-	hypothetical protein
3521	 63.88	0	3773602..3774246	-	214	121606440	-	Pnap_3552	-	hemolysin III family channel protein
3522	 59.48	0	3774351..3774656	+	101	121606441	-	Pnap_3553	-	hypothetical protein
3523	 56.90	-1	3774687..3774983	+	98	121606442	-	Pnap_3554	-	hypothetical protein
3524	 48.85	-2	3775123..3775515	+	130	121606443	-	Pnap_3555	-	hypothetical protein
3525	 58.43	0	3775783..3777276	+	497	121606444	-	Pnap_3556	-	transposase, IS4 family protein
3526	 65.77	0	3777739..3778959	-	406	121606445	-	Pnap_3557	-	6-phosphofructokinase
3527	 66.15	0	3779080..3780447	-	455	121606446	-	Pnap_3558	-	filamentation induced by cAMP protein Fic
3528	 63.78	0	3780600..3781673	-	357	121606447	-	Pnap_3559	-	TRAP-type uncharacterized transport system protein, periplasmic component
3529	 66.67	0	3781675..3782457	-	260	121606448	-	Pnap_3560	-	zinc finger, RanBP2-type
3530	 65.97	0	3782983..3783696	+	237	121606449	-	Pnap_3561	-	hypothetical protein
3531	 65.51	0	3783720..3784322	+	200	121606450	-	Pnap_3562	-	D-alanyl-D-alanine dipeptidase
3532	 59.70	0	3784446..3785048	+	200	121606451	-	Pnap_3563	-	hypothetical protein
3533	 58.97	0	3785185..3785418	+	77	121606452	-	Pnap_3564	-	hypothetical protein
3534	 72.25	+1	3785458..3788070	+	870	121606453	-	Pnap_3565	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
3535	 64.89	0	3788204..3789949	+	581	121606454	-	Pnap_3566	-	poly-beta-hydroxybutyrate polymerase domain-containing protein
3536	 67.79	0	3790004..3790807	+	267	121606455	-	Pnap_3567	-	short-chain dehydrogenase/reductase SDR
3537	 66.80	0	3790776..3792278	+	500	121606456	-	Pnap_3568	-	bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
3538	 70.39	+1	3792275..3793510	+	411	121606457	-	Pnap_3569	-	acetate kinase
3539	 67.39	0	3793633..3794739	-	368	121606458	-	Pnap_3570	-	MscS mechanosensitive ion channel
3540	 66.33	0	3794748..3795953	-	401	121606459	purT	Pnap_3571	-	phosphoribosylglycinamide formyltransferase 2
3541	 67.34	0	3796152..3796742	+	196	121606460	-	Pnap_3572	-	hypothetical protein
3542	 65.71	0	3796823..3797764	+	313	121606461	-	Pnap_3573	-	ABC transporter related
3543	 64.80	0	3797761..3798615	+	284	121606462	-	Pnap_3574	-	ABC transporter
3544	 64.81	0	3798759..3799784	+	341	121606463	-	Pnap_3575	-	CheB methylesterase
3545	 69.64	+1	3799830..3800501	-	223	121606464	-	Pnap_3576	-	hypothetical protein
3546	 62.39	0	3800883..3802121	+	412	121606465	-	Pnap_3577	-	extracellular ligand-binding receptor
3547	 61.66	0	3802311..3802889	-	192	121606466	-	Pnap_3578	-	YceI family protein
3548	 63.11	0	3802933..3803523	-	196	121606467	-	Pnap_3579	-	YceI family protein
3549	 67.24	0	3803569..3804087	-	172	121606468	-	Pnap_3580	-	cytochrome B561
3550	 64.81	0	3804273..3805244	-	323	121606469	-	Pnap_3581	-	hypothetical protein
3551	 64.67	0	3805325..3806374	+	349	121606470	-	Pnap_3582	-	serine/threonine protein kinase
3552	 65.80	0	3806480..3807514	+	344	121606471	-	Pnap_3583	-	ErfK/YbiS/YcfS/YnhG family protein
3553	 68.95	+1	3807558..3808082	+	174	121606472	-	Pnap_3584	-	peptidase M23B
3554	 70.59	+1	3808113..3808673	-	186	121606473	-	Pnap_3585	-	hypothetical protein
3555	 68.12	0	3808670..3810247	-	525	121606474	-	Pnap_3586	-	peptidoglycan binding domain-containing protein
3556	 62.38	0	3810387..3812276	-	629	121606475	-	Pnap_3587	-	heat shock protein 90
3557	 63.12	0	3812565..3813212	+	215	121606476	-	Pnap_3588	-	hypothetical protein
3558	 62.59	0	3813401..3814063	+	220	121606477	-	Pnap_3589	-	hypothetical protein
3559	 64.51	0	3814083..3814730	+	215	121606478	-	Pnap_3590	-	hypothetical protein
3560	 66.25	0	3814731..3815213	+	160	121606479	-	Pnap_3591	-	hypothetical protein
3561	 66.06	0	3815210..3816037	+	275	121606480	-	Pnap_3592	-	hypothetical protein
3562	 71.93	+1	3816034..3818121	+	695	121606481	-	Pnap_3593	-	hypothetical protein
3563	 71.70	+1	3818185..3819534	-	449	121606482	-	Pnap_3594	-	PGAP1 family protein
3564	 69.06	+1	3819672..3820508	-	278	121606483	-	Pnap_3595	-	pseudouridine synthase
3565	 70.25	+1	3820620..3821177	+	185	121606484	-	Pnap_3596	-	putative transmembrane protein
3566	 67.91	0	3821202..3821846	-	214	121606485	-	Pnap_3597	-	two component LuxR family transcriptional regulator
3567	 72.42	+1	3821843..3823162	-	439	121606486	-	Pnap_3598	-	integral membrane sensor signal transduction histidine kinase
3568	 67.48	0	3823415..3825883	+	822	121606487	-	Pnap_3599	-	TonB-dependent receptor
3569	 70.20	+1	3825987..3826694	-	235	121606488	-	Pnap_3600	-	two component transcriptional regulator
3570	 70.70	+1	3826704..3829403	-	899	121606489	-	Pnap_3601	-	osmosensitive K+ channel signal transduction histidine kinase
3571	 69.71	+1	3829422..3830012	-	196	121606490	-	Pnap_3602	-	potassium-transporting ATPase, C subunit
3572	 66.19	0	3830032..3832110	-	692	121606491	-	Pnap_3603	-	K+-transporting ATPase, B subunit
3573	 66.00	0	3832130..3833929	-	599	121606492	-	Pnap_3604	-	potassium-transporting ATPase, A subunit
3574	 64.97	0	3834319..3835026	-	235	121606493	-	Pnap_3605	-	CRP/FNR family transcriptional regulator
62.80	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.