IslandPathversion 1.0

IslandPath Analysis: Polaromonas naphthalenivorans CJ2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.80 STD DEV: 5.38
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291
4084 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2541	 51.03	-2	2704756..2704998	-	80	121605460	-	Pnap_2565	-	hypothetical protein
2542	 61.48	0	2705159..2705428	+	89	121605461	-	Pnap_2566	-	hypothetical protein
2543	 64.96	0	2705572..2705805	+	77	121605462	-	Pnap_2567	-	hypothetical protein
2544	 67.96	0	2705873..2706643	+	256	121605463	-	Pnap_2568	-	TonB family protein
2545	 65.43	0	2706666..2707394	+	242	121605464	-	Pnap_2569	-	MotA/TolQ/ExbB proton channel
2546	 62.53	0	2707397..2707807	+	136	121605465	-	Pnap_2570	-	biopolymer transport protein ExbD/TolR
2547	 62.25	0	2707819..2708022	+	67	121605466	-	Pnap_2571	-	hypothetical protein
2548	 66.18	0	2708202..2708609	-	135	121605467	-	Pnap_2572	-	hypothetical protein
2549	 63.35	0	2708817..2709509	+	230	121605468	-	Pnap_2573	-	hypothetical protein
2550	 61.61	0	2709588..2710121	+	177	121605469	-	Pnap_2574	-	transposase and inactivated derivative
2551	 64.79	0	2710126..2710659	+	177	121605470	-	Pnap_2575	-	ISSod10, transposase OrfB
2552	 65.38	0	2710747..2712219	-	490	121605471	rumA	Pnap_2576	-	23S rRNA 5-methyluridine methyltransferase
2553	 64.13	0	2712352..2713257	-	301	121605472	-	Pnap_2577	-	peptidase M23B
2554	 64.35	0	2713322..2714185	-	287	121605473	-	Pnap_2578	-	protein-L-isoaspartate O-methyltransferase
2555	 64.12	0	2714200..2714985	-	261	121605474	-	Pnap_2579	-	stationary-phase survival protein SurE
2556	 67.18	0	2715138..2716112	+	324	121605475	-	Pnap_2580	-	alcohol dehydrogenase
2557	 68.21	+1	2716135..2716974	-	279	121605476	-	Pnap_2581	-	hypothetical protein
2558	 65.55	0	2717087..2717443	-	118	121605477	-	Pnap_2582	-	hypothetical protein
2559	 64.86	0	2717544..2718482	-	312	121605478	-	Pnap_2583	-	LysR family transcriptional regulator
2560	 66.67	0	2718543..2719535	+	330	121605479	-	Pnap_2584	-	NAD-dependent epimerase/dehydratase
2561	 67.88	0	2719578..2720318	-	246	121605480	-	Pnap_2585	-	NADPH-dependent FMN reductase
2562	 63.66	0	2720305..2720736	-	143	121605481	-	Pnap_2586	-	arsenate reductase
2563	 68.64	+1	2720818..2721171	+	117	121605482	-	Pnap_2587	-	regulatory protein, ArsR
2564	 67.26	0	2721267..2721770	+	167	121605483	-	Pnap_2588	-	protein tyrosine phosphatase
2565	 63.06	0	2721797..2722849	+	350	121605484	-	Pnap_2589	-	arsenical-resistance protein
2566	 66.67	0	2722921..2723442	-	173	121605485	-	Pnap_2590	-	GCN5-related N-acetyltransferase
2567	 70.69	+1	2723682..2725073	+	463	121605486	-	Pnap_2591	-	RND family efflux transporter MFP subunit
2568	 66.43	0	2725070..2728396	+	1108	121605487	-	Pnap_2592	-	acriflavin resistance protein
2569	 66.79	0	2729231..2732449	+	1072	121605488	-	Pnap_2593	-	acriflavin resistance protein
2570	 70.64	+1	2732458..2733891	+	477	121605489	-	Pnap_2594	-	RND efflux system outer membrane lipoprotein
2571	 65.65	0	2734486..2734878	+	130	121605490	-	Pnap_2595	-	hypothetical protein
2572	 66.01	0	2734884..2735189	+	101	121605491	-	Pnap_2596	-	hypothetical protein
2573	 64.16	0	2735254..2735811	-	185	121605492	-	Pnap_2597	-	rare lipoprotein A
2574	 60.07	0	2735835..2736122	+	95	121605493	-	Pnap_2598	-	hypothetical protein
2575	 56.54	-1	2736710..2737114	+	134	121605494	-	Pnap_2600	-	glyoxalase/bleomycin resistance protein/dioxygenase
2576	 69.07	+1	2737166..2738164	-	332	121605495	-	Pnap_2601	-	ribokinase-like domain-containing protein
2577	 63.96	0	2738295..2739293	+	332	121605496	-	Pnap_2602	-	periplasmic binding protein/LacI transcriptional regulator
2578	 60.22	0	2739467..2740474	+	335	121605497	-	Pnap_2603	-	porin
2579	 60.69	0	2740617..2741570	+	317	121605498	-	Pnap_2604	-	inner-membrane translocator
2580	 62.75	0	2741570..2742361	+	263	121605499	-	Pnap_2605	-	ABC transporter related
2581	 63.13	0	2742388..2742840	+	150	121605500	-	Pnap_2606	-	RbsD or FucU transport
2582	 67.57	0	2742837..2744051	+	404	121605501	-	Pnap_2607	-	ROK family protein
2583	 61.88	0	2744275..2745276	+	333	121605502	-	Pnap_2608	-	periplasmic binding protein/LacI transcriptional regulator
2584	 64.56	0	2745429..2746760	-	443	121605503	-	Pnap_2609	-	phosphoglucosamine mutase
2585	 65.14	0	2746904..2747755	-	283	121605504	-	Pnap_2610	-	dihydropteroate synthase
2586	 61.79	0	2747862..2749790	-	642	121605505	-	Pnap_2611	-	ATP-dependent metalloprotease FtsH
2587	 59.62	0	2749940..2750677	-	245	121605506	-	Pnap_2612	-	ribosomal RNA methyltransferase RrmJ/FtsJ
2588	 62.05	0	2750719..2751195	+	158	121605507	-	Pnap_2613	-	hypothetical protein
2589	 64.48	0	2751305..2753362	+	685	121605508	-	Pnap_2614	-	oligopeptidase A
2590	 65.65	0	2753386..2754075	+	229	121605509	-	Pnap_2615	-	glutaredoxin
2591	 63.07	0	2754113..2754862	-	249	121605510	-	Pnap_2616	-	ribose-5-phosphate isomerase A
2592	 66.38	0	2754928..2755980	+	350	121605511	-	Pnap_2617	-	dihydroorotate dehydrogenase 2
2593	 65.02	0	2756243..2757214	+	323	121605512	-	Pnap_2618	-	hypothetical protein
2594	 69.10	+1	2757211..2757990	+	259	121605513	-	Pnap_2619	-	hypothetical protein
2595	 58.53	0	2758057..2758314	-	85	121605514	-	Pnap_2620	-	hypothetical protein
2596	 64.82	0	2758394..2758990	+	198	121605515	-	Pnap_2621	-	3'-5' exonuclease
2597	 64.63	0	2759051..2759689	-	212	121605516	-	Pnap_2622	-	hypothetical protein
2598	 63.16	0	2759782..2761035	+	417	121605517	-	Pnap_2623	-	hypothetical protein
2599	 64.56	0	2761157..2762200	-	347	121605518	-	Pnap_2624	-	helix-turn-helix domain-containing protein
2600	 61.93	0	2762407..2763798	+	463	121605519	-	Pnap_2625	-	ethanolamine transproter
2601	 64.88	0	2763806..2765203	+	465	121605520	-	Pnap_2626	-	ethanolamine ammonia lyase large subunit
2602	 65.74	0	2765226..2766086	+	286	121605521	-	Pnap_2627	-	ethanolamine ammonia-lyase small subunit
2603	 63.89	0	2766092..2768716	-	874	121605522	-	Pnap_2628	-	alanyl-tRNA synthetase
2604	 64.80	0	2768789..2770180	-	463	121605523	-	Pnap_2629	-	GntR family transcriptional regulator
2605	 66.05	0	2770364..2771656	+	430	121605524	-	Pnap_2630	-	4-aminobutyrate aminotransferase
2606	 64.90	0	2771720..2772796	+	358	121605525	-	Pnap_2631	-	spermidine/putrescine ABC transporter ATPase subunit
2607	 61.72	0	2772865..2773896	+	343	121605526	-	Pnap_2632	-	extracellular solute-binding protein
2608	 64.78	0	2773927..2775198	+	423	121605527	-	Pnap_2633	-	binding-protein-dependent transport systems inner membrane component
2609	 63.77	0	2775206..2776033	+	275	121605528	-	Pnap_2634	-	Fis family transcriptional regulator
2610	 67.09	0	2776062..2777009	+	315	121605529	-	Pnap_2635	-	putative agmatinase
2611	 63.67	0	2777124..2778590	+	488	121605530	-	Pnap_2636	-	succinic semialdehyde dehydrogenase
2612	 59.20	0	2778556..2780832	-	758	121605531	-	Pnap_2637	-	FMN-binding domain-containing protein
2613	 56.71	-1	2780837..2781871	-	344	121605532	-	Pnap_2638	-	ApbE family lipoprotein
2614	 62.37	0	2782142..2782630	+	162	121605533	-	Pnap_2639	-	hypothetical protein
2615	 65.70	0	2782616..2783233	-	205	121605534	-	Pnap_2640	-	two component LuxR family transcriptional regulator
2616	 65.32	0	2783244..2784650	-	468	121605535	-	Pnap_2641	-	integral membrane sensor signal transduction histidine kinase
2617	 65.78	0	2784733..2785296	-	187	121605536	-	Pnap_2642	-	Sel1 domain-containing protein
2618	 62.72	0	2785967..2787208	+	413	121605537	-	Pnap_2643	-	phage integrase family protein
2619	 57.84	0	2787221..2787424	+	67	121605538	-	Pnap_2644	-	YcfA family protein
2620	 64.98	0	2787439..2787852	+	137	121605539	-	Pnap_2645	-	hypothetical protein
2621	 51.79	-2	2787960..2788490	+	176	121605540	-	Pnap_2646	-	hypothetical protein
2622	 62.00	0	2788573..2788872	+	99	121605541	-	Pnap_2647	-	phage transcriptional regulator, AlpA
2623	 64.24	0	2788963..2789250	+	95	121605542	-	Pnap_2648	-	hypothetical protein
2624	 58.05	0	2789247..2789873	+	208	121605543	-	Pnap_2649	-	hypothetical protein
2625	 58.55	0	2789870..2790214	+	114	121605544	-	Pnap_2650	-	hypothetical protein
2626	 67.49	0	2790211..2790573	+	120	121605545	-	Pnap_2651	-	hypothetical protein
2627	 66.79	0	2790566..2793007	+	813	121605546	-	Pnap_2652	-	hypothetical protein
2628	 64.06	0	2793004..2793540	+	178	121605547	-	Pnap_2653	-	hypothetical protein
2629	 61.84	0	2793709..2794143	+	144	121605548	-	Pnap_2654	-	hypothetical protein
2630	 64.95	0	2794661..2795299	+	212	121605549	-	Pnap_2655	-	hypothetical protein
2631	 61.50	0	2795491..2798238	-	915	121605550	-	Pnap_2656	-	multi-sensor signal transduction histidine kinase
2632	 64.01	0	2798320..2798958	-	212	121605551	-	Pnap_2657	-	3-oxoacid CoA-transferase, B subunit
2633	 63.25	0	2798961..2799779	-	272	121605552	-	Pnap_2658	-	3-oxoacid CoA-transferase, A subunit
2634	 62.52	0	2799890..2800444	+	184	121605553	-	Pnap_2659	-	putative PAS/PAC sensor protein
2635	 60.83	0	2800514..2800873	-	119	121605554	-	Pnap_2660	-	ribosomal subunit interface protein, putative
2636	 63.49	0	2801163..2801540	-	125	121605555	-	Pnap_2661	-	carboxymuconolactone decarboxylase
2637	 62.97	0	2801729..2803189	+	486	121605556	-	Pnap_2662	-	catalase
2638	 63.89	0	2803229..2804236	-	335	121605557	-	Pnap_2663	-	hypothetical protein
2639	 65.42	0	2804552..2805994	-	480	121605558	-	Pnap_2664	-	aldehyde dehydrogenase
2640	 63.66	0	2806029..2807027	-	332	121605559	-	Pnap_2665	-	hypothetical protein
62.80	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.