IslandPathversion 1.0

IslandPath Analysis: Polaromonas naphthalenivorans CJ2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.80 STD DEV: 5.38
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291
4084 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2368	 60.85	0	2519610..2520623	-	337	121605287	-	Pnap_2388	-	tRNA-dihydrouridine synthase A
2369	 60.89	0	2520806..2522605	+	599	121605288	-	Pnap_2389	-	peptidase M14, carboxypeptidase A
2370	 51.79	-2	2522783..2523172	+	129	121605289	-	Pnap_2390	-	hypothetical protein
2371	 57.73	0	2523320..2524729	-	469	121605290	-	Pnap_2391	-	replicative DNA helicase
2372	 54.97	-1	2524938..2525390	-	150	121605291	-	Pnap_2392	-	ribosomal protein L9
2373	 56.14	-1	2525403..2525687	-	94	121605292	-	Pnap_2393	-	ribosomal protein S18
2374	 51.57	-2	2525698..2526015	-	105	121605293	-	Pnap_2394	-	putative primosomal replication protein
2375	 54.92	-1	2526064..2526429	-	121	121605294	-	Pnap_2395	-	ribosomal protein S6
2376	 56.85	-1	2526501..2528681	-	726	121605295	-	Pnap_2396	-	Na+/solute symporter
2377	 50.57	-2	2528684..2528944	-	86	121605296	-	Pnap_2397	-	hypothetical protein
2378	 57.29	-1	2528931..2529794	-	287	121605297	-	Pnap_2398	-	TPR repeat-containing protein
2379	 59.79	0	2529971..2532370	-	799	121605298	-	Pnap_2399	-	phosphoenolpyruvate synthase
2380	 60.10	0	2532550..2533371	+	273	121605299	-	Pnap_2400	-	hypothetical protein
2381	 59.34	0	2533623..2534195	+	190	121605300	-	Pnap_2401	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2382	 62.66	0	2534278..2535876	+	532	121605301	-	Pnap_2402	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2383	 67.00	0	2535955..2536257	-	100	121605302	-	Pnap_2403	-	antibiotic biosynthesis monooxygenase
2384	 66.98	0	2536335..2536979	-	214	121605303	-	Pnap_2404	-	glutathione S-transferase domain-containing protein
2385	 62.36	0	2537271..2537618	+	115	121605304	-	Pnap_2405	-	hypothetical protein
2386	 62.41	0	2537615..2538601	+	328	121605305	-	Pnap_2406	-	putative poly-gamma-glutamate biosynthesis enzyme
2387	 64.51	0	2538902..2540155	+	417	121605306	-	Pnap_2407	-	DEAD/DEAH box helicase domain-containing protein
2388	 63.76	0	2540291..2542936	+	881	121605307	-	Pnap_2408	-	pentapeptide repeat-containing protein
2389	 63.73	0	2543124..2545781	+	885	121605308	-	Pnap_2409	-	pentapeptide repeat-containing protein
2390	 62.21	0	2545878..2549153	+	1091	121605309	-	Pnap_2410	-	NHL repeat-containing protein
2391	 60.19	0	2549257..2549565	-	102	121605310	-	Pnap_2411	-	hypothetical protein
2392	 62.66	0	2549679..2550227	-	182	121605311	-	Pnap_2412	-	DSBA oxidoreductase
2393	 64.32	0	2550396..2550608	+	70	121605312	-	Pnap_2413	-	hypothetical protein
2394	 61.64	0	2550642..2551019	-	125	121605313	-	Pnap_2414	-	hypothetical protein
2395	 57.78	0	2551442..2551666	-	74	121605314	-	Pnap_2415	-	TOBE domain-containing protein
2396	 69.25	+1	2551777..2552589	-	270	121605315	-	Pnap_2416	-	ABC transporter related
2397	 65.45	0	2552599..2553501	-	300	121605316	-	Pnap_2417	-	binding-protein-dependent transport systems inner membrane component
2398	 66.41	0	2553523..2554686	-	387	121605317	-	Pnap_2418	-	alkanesulfonate monooxygenase
2399	 65.81	0	2554706..2555755	-	349	121605318	-	Pnap_2419	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
2400	 63.64	0	2555781..2556803	-	340	121605319	-	Pnap_2420	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
2401	 67.67	0	2556926..2557525	-	199	121605320	-	Pnap_2421	-	NADPH-dependent FMN reductase
2402	 63.47	0	2557586..2558617	-	343	121605321	-	Pnap_2422	-	sulfate ABC transporter, periplasmic sulfate-binding protein
2403	 62.77	0	2558764..2559045	+	93	121605322	-	Pnap_2423	-	hypothetical protein
2404	 69.02	+1	2559055..2560968	+	637	121605323	-	Pnap_2424	-	hypothetical protein
2405	 62.30	0	2561038..2562273	-	411	121605324	-	Pnap_2425	-	extracellular ligand-binding receptor
2406	 66.41	0	2562506..2563297	+	263	121605325	-	Pnap_2426	-	hypothetical protein
2407	 66.72	0	2563389..2565197	+	602	121605326	-	Pnap_2427	-	nitrite/sulfite reductase hemoprotein beta subunit
2408	 61.69	0	2565236..2565637	+	133	121605327	-	Pnap_2428	-	hypothetical protein
2409	 64.40	0	2565649..2566443	+	264	121605328	-	Pnap_2429	-	phosphoadenylyl-sulfate reductase (thioredoxin)
2410	 63.52	0	2566440..2567393	+	317	121605329	-	Pnap_2430	-	sulfate adenylyltransferase subunit 2
2411	 65.30	0	2567393..2568709	+	438	121605330	-	Pnap_2431	-	sulfate adenylyltransferase, large subunit
2412	 59.70	0	2568881..2569210	+	109	121605331	-	Pnap_2432	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2413	 57.49	0	2569288..2570388	+	366	121605332	-	Pnap_2433	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2414	 64.14	0	2570465..2571769	+	434	121605333	-	Pnap_2434	-	permease for cytosine/purines, uracil, thiamine, allantoin
2415	 62.35	0	2571753..2572610	-	285	121605334	-	Pnap_2435	-	phosphomethylpyrimidine kinase
2416	 64.48	0	2573052..2574605	+	517	121605335	-	Pnap_2436	-	carbohydrate kinase, YjeF related protein
2417	 62.28	0	2574602..2575171	-	189	121605336	-	Pnap_2437	-	protein of unknown function YGGT
2418	 62.82	0	2575213..2577372	-	719	121605337	-	Pnap_2438	-	ribonuclease R
2419	 57.65	0	2578044..2579429	-	461	121605338	-	Pnap_2439	-	MiaB-like tRNA modifying enzyme YliG
2420	 62.17	0	2579464..2581086	+	540	121605339	-	Pnap_2440	-	recombinase
2421	 62.22	0	2581460..2581774	+	104	121605340	-	Pnap_2441	-	hypothetical protein
2422	 55.70	-1	2581894..2583060	+	388	121605341	-	Pnap_2442	-	ATPase central domain-containing protein
2423	 58.33	0	2583057..2585276	+	739	121605342	-	Pnap_2443	-	hypothetical protein
2424	 49.24	-2	2585330..2586121	+	263	121605343	-	Pnap_2444	-	ECF subfamily RNA polymerase sigma-24 factor
2425	 52.69	-1	2586118..2586711	+	197	121605344	-	Pnap_2445	-	hypothetical protein
2426	 59.02	0	2586714..2590139	+	1141	121605345	-	Pnap_2446	-	UvrD/REP helicase
2427	 59.35	0	2590232..2591161	+	309	121605346	-	Pnap_2447	-	hypothetical protein
2428	 60.71	0	2591158..2592567	+	469	121605347	-	Pnap_2448	-	UBA/THIF-type NAD/FAD binding protein
2429	 53.76	-1	2592632..2592910	+	92	121605348	-	Pnap_2449	-	hypothetical protein
2430	 53.43	-1	2594155..2594577	-	140	121605349	-	Pnap_2450	-	hypothetical protein
2431	 61.82	0	2595386..2596024	-	212	121605350	-	Pnap_2452	-	maleylacetoacetate isomerase
2432	 58.83	0	2596034..2596735	-	233	121605351	-	Pnap_2453	-	fumarylacetoacetate (FAA) hydrolase
2433	 60.98	0	2596829..2597884	-	351	121605352	-	Pnap_2454	-	cupin 2 domain-containing protein
2434	 57.19	-1	2597903..2598493	-	196	121605353	-	Pnap_2455	-	hemerythrin HHE cation binding region
2435	 57.42	0	2598530..2599243	-	237	121605354	-	Pnap_2456	-	ABC transporter related
2436	 58.83	0	2599246..2599998	-	250	121605355	-	Pnap_2457	-	ABC transporter related
2437	 58.52	0	2599995..2600951	-	318	121605356	-	Pnap_2458	-	inner-membrane translocator
2438	 59.44	0	2600948..2601874	-	308	121605357	-	Pnap_2459	-	inner-membrane translocator
2439	 57.80	0	2601874..2603046	-	390	121605358	-	Pnap_2460	-	extracellular ligand-binding receptor
2440	 55.87	-1	2603082..2603396	-	104	121605359	-	Pnap_2461	-	Rieske (2Fe-2S) domain-containing protein
2441	 51.52	-2	2603406..2603735	-	109	121605360	-	Pnap_2462	-	aromatic-ring-hydroxylating dioxygenase, beta subunit
2442	 60.68	0	2604381..2605148	+	255	121605361	-	Pnap_2464	-	IstB ATP binding domain-containing protein
2443	 53.65	-1	2605625..2606584	-	319	121605362	-	Pnap_2465	-	proline dehydrogenase
2444	 51.71	-2	2606589..2607230	-	213	121605363	-	Pnap_2466	-	GntR family transcriptional regulator
2445	 61.73	0	2607554..2608363	-	269	121605364	-	Pnap_2467	-	IstB ATP binding domain-containing protein
2446	 62.07	0	2608360..2609904	-	514	121605365	-	Pnap_2468	-	integrase catalytic subunit
2447	 63.78	0	2609888..2610199	-	103	121605366	-	Pnap_2469	-	hypothetical protein
2448	 57.10	-1	2610519..2610821	-	100	121605367	-	Pnap_2470	-	recombinase
2449	 58.27	0	2610961..2611353	-	130	121605368	-	Pnap_2471	-	transposase IS3/IS911 family protein
2450	 53.82	-1	2611702..2612736	-	344	121605369	-	Pnap_2472	-	transposase IS116/IS110/IS902 family protein
2451	 58.78	0	2612897..2613175	+	92	121605370	-	Pnap_2473	-	hypothetical protein
2452	 60.92	0	2613247..2614116	-	289	121605371	-	Pnap_2474	-	5-carboxymethyl-2-hydroxymuconate delta-isomerase
2453	 68.36	+1	2614388..2615392	-	334	121605372	-	Pnap_2476	-	cupin 2 domain-containing protein
2454	 55.94	-1	2615493..2616098	-	201	121605373	-	Pnap_2477	-	glutathione S-transferase domain-containing protein
2455	 52.69	-1	2616304..2616897	-	197	121605374	-	Pnap_2478	-	DSBA oxidoreductase
2456	 56.26	-1	2617087..2618124	-	345	121605375	-	Pnap_2479	-	dihydrodipicolinate synthetase
2457	 55.66	-1	2618182..2618817	-	211	121605376	-	Pnap_2480	-	OmpW family protein
2458	 55.56	-1	2618892..2619800	-	302	121605377	-	Pnap_2481	-	glyoxalase/bleomycin resistance protein/dioxygenase
2459	 59.78	0	2619826..2621277	-	483	121605378	-	Pnap_2482	-	aldehyde dehydrogenase
2460	 56.28	-1	2621326..2622105	-	259	121605379	-	Pnap_2483	-	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase
2461	 52.99	-1	2622169..2622753	-	194	121605380	-	Pnap_2484	-	aromatic-ring-hydroxylating dioxygenase, beta subunit
2462	 54.76	-1	2622768..2624111	-	447	121605381	-	Pnap_2485	-	ring hydroxylating dioxygenase, alpha subunit
2463	 56.64	-1	2624176..2624514	-	112	121605382	-	Pnap_2486	-	Rieske (2Fe-2S) domain-containing protein
2464	 51.65	-2	2624524..2625009	-	161	121605383	-	Pnap_2487	-	aromatic-ring-hydroxylating dioxygenase, beta subunit
2465	 55.58	-1	2625012..2626274	-	420	121605384	-	Pnap_2488	-	Rieske (2Fe-2S) domain-containing protein
2466	 57.55	0	2626320..2627306	-	328	121605385	-	Pnap_2489	-	oxidoreductase FAD-binding subunit
2467	 54.23	-1	2627423..2628379	+	318	121605386	-	Pnap_2490	-	LysR family transcriptional regulator
62.80	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.