IslandPathversion 1.0

IslandPath Analysis: Polaromonas naphthalenivorans CJ2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.80 STD DEV: 5.38
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291
4084 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2317	 65.62	0	2469780..2470259	-	159	121605236	-	Pnap_2337	-	hypothetical protein
2318	 66.61	0	2470294..2472009	-	571	121605237	-	Pnap_2338	-	ATPase central domain-containing protein
2319	 66.87	0	2472032..2472520	-	162	121605238	-	Pnap_2339	-	hypothetical protein
2320	 63.33	0	2472569..2472808	-	79	121605239	-	Pnap_2340	-	hypothetical protein
2321	 65.41	0	2472836..2473153	-	105	121605240	-	Pnap_2341	-	hypothetical protein
2322	 58.62	0	2473156..2473503	-	115	121605241	-	Pnap_2342	-	ferredoxin
2323	 59.87	0	2473589..2475148	-	519	121605242	-	Pnap_2343	-	nitrogenase molybdenum-iron protein beta chain
2324	 58.13	0	2475245..2476708	-	487	121605243	-	Pnap_2344	-	nitrogenase molybdenum-iron protein alpha chain
2325	 59.37	0	2476797..2477687	-	296	121605244	nifH	Pnap_2345	-	nitrogenase reductase
2326	 67.83	0	2478071..2478499	+	142	121605245	-	Pnap_2346	-	globin
2327	 60.10	0	2478554..2479162	+	202	121605246	-	Pnap_2347	-	hypothetical protein
2328	 71.78	+1	2479183..2479632	+	149	121605247	-	Pnap_2348	-	ankyrin
2329	 71.15	+1	2479626..2481320	+	564	121605248	-	Pnap_2349	-	hypothetical protein
2330	 70.05	+1	2481317..2482084	+	255	121605249	-	Pnap_2350	-	ankyrin
2331	 70.86	+1	2482095..2482523	+	142	121605250	-	Pnap_2351	-	nitrogenase-associated protein
2332	 63.10	0	2482538..2482789	+	83	121605251	-	Pnap_2352	-	FmdB family regulatory protein
2333	 63.70	0	2482789..2483226	+	145	121605252	-	Pnap_2353	-	OsmC family protein
2334	 66.67	0	2483223..2483468	+	81	121605253	-	Pnap_2354	-	hypothetical protein
2335	 68.52	+1	2483616..2483831	-	71	121605254	-	Pnap_2355	-	hypothetical protein
2336	 65.99	0	2483828..2484415	-	195	121605255	-	Pnap_2356	-	RNA polymerase sigma factor
2337	 67.63	0	2484477..2484995	+	172	121605256	-	Pnap_2357	-	redoxin domain-containing protein
2338	 61.75	0	2485143..2485427	+	94	121605257	-	Pnap_2358	-	putative signal peptide protein
2339	 70.94	+1	2485433..2486368	+	311	121605258	-	Pnap_2359	-	hypothetical protein
2340	 71.25	+1	2486365..2487150	+	261	121605259	-	Pnap_2360	-	hypothetical protein
2341	 68.12	0	2487168..2487650	+	160	121605260	-	Pnap_2361	-	DoxX family protein
2342	 69.01	+1	2487776..2488543	-	255	121605261	-	Pnap_2362	-	ABC transporter related
2343	 71.76	+1	2488567..2489586	-	339	121605262	-	Pnap_2363	-	transport system permease protein
2344	 66.55	0	2489583..2490449	-	288	121605263	-	Pnap_2364	-	periplasmic binding protein
2345	 66.16	0	2490446..2491039	-	197	121605264	-	Pnap_2365	-	cobalbumin biosynthesis enzyme
2346	 64.20	0	2491032..2491883	-	283	121605265	-	Pnap_2366	-	periplasmic binding protein
2347	 67.64	0	2491876..2493210	-	444	121605266	-	Pnap_2367	-	cobyrinic acid a,c-diamide synthase
2348	 65.16	0	2493213..2495066	-	617	121605267	-	Pnap_2368	-	TonB-dependent receptor, plug
2349	 57.83	0	2495476..2495724	+	82	121605268	-	Pnap_2369	-	hypothetical protein
2350	 63.06	0	2495721..2496053	+	110	121605269	-	Pnap_2370	-	hypothetical protein
2351	 63.24	0	2496363..2497178	+	271	121605270	-	Pnap_2371	-	hypothetical protein
2352	 63.55	0	2497205..2497717	-	170	121605271	-	Pnap_2372	-	ribonuclease activity regulator protein RraA
2353	 55.56	-1	2497957..2498361	+	134	121605272	-	Pnap_2373	-	SWIB/MDM2 domain-containing protein
2354	 60.70	0	2498541..2499395	-	284	121605273	-	Pnap_2374	-	extradiol ring-cleavage dioxygenase III subunit B
2355	 57.79	0	2499733..2501466	+	577	121605274	-	Pnap_2375	-	polyhydroxyalkanoate depolymerase, intracellular
2356	 61.49	0	2501515..2502210	+	231	121605275	-	Pnap_2376	-	electron transport complex, RnfABCDGE type, B subunit
2357	 63.67	0	2502203..2505577	+	1124	121605276	-	Pnap_2377	-	multi-sensor hybrid histidine kinase
2358	 60.12	0	2505629..2506117	-	162	121605277	-	Pnap_2378	-	lactoylglutathione lyase
2359	 61.35	0	2506114..2508162	-	682	121605278	-	Pnap_2379	-	acetyl-CoA carboxylase, biotin carboxylase
2360	 61.15	0	2508212..2508973	-	253	121605279	-	Pnap_2380	-	hypothetical protein
2361	 60.67	0	2509011..2510543	-	510	121605280	-	Pnap_2381	-	carboxyl transferase
2362	 64.58	0	2510593..2511597	-	334	121605281	-	Pnap_2382	-	arginine/ornithine transport system ATPase
2363	 61.80	0	2511612..2513768	-	718	121605282	-	Pnap_2383	-	methylmalonyl-CoA mutase
2364	 59.59	0	2513937..2514572	+	211	121605283	-	Pnap_2384	-	GntR family transcriptional regulator
2365	 57.68	0	2514596..2516164	-	522	121605284	-	Pnap_2385	-	hypothetical protein
2366	 57.18	-1	2516161..2517435	-	424	121605285	-	Pnap_2386	-	hypothetical protein
2367	 53.93	-1	2517498..2519420	-	640	121605286	-	Pnap_2387	-	putative serine protein kinase, PrkA
2368	 60.85	0	2519610..2520623	-	337	121605287	-	Pnap_2388	-	tRNA-dihydrouridine synthase A
2369	 60.89	0	2520806..2522605	+	599	121605288	-	Pnap_2389	-	peptidase M14, carboxypeptidase A
2370	 51.79	-2	2522783..2523172	+	129	121605289	-	Pnap_2390	-	hypothetical protein
2371	 57.73	0	2523320..2524729	-	469	121605290	-	Pnap_2391	-	replicative DNA helicase
2372	 54.97	-1	2524938..2525390	-	150	121605291	-	Pnap_2392	-	ribosomal protein L9
2373	 56.14	-1	2525403..2525687	-	94	121605292	-	Pnap_2393	-	ribosomal protein S18
2374	 51.57	-2	2525698..2526015	-	105	121605293	-	Pnap_2394	-	putative primosomal replication protein
2375	 54.92	-1	2526064..2526429	-	121	121605294	-	Pnap_2395	-	ribosomal protein S6
2376	 56.85	-1	2526501..2528681	-	726	121605295	-	Pnap_2396	-	Na+/solute symporter
2377	 50.57	-2	2528684..2528944	-	86	121605296	-	Pnap_2397	-	hypothetical protein
2378	 57.29	-1	2528931..2529794	-	287	121605297	-	Pnap_2398	-	TPR repeat-containing protein
2379	 59.79	0	2529971..2532370	-	799	121605298	-	Pnap_2399	-	phosphoenolpyruvate synthase
2380	 60.10	0	2532550..2533371	+	273	121605299	-	Pnap_2400	-	hypothetical protein
2381	 59.34	0	2533623..2534195	+	190	121605300	-	Pnap_2401	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
2382	 62.66	0	2534278..2535876	+	532	121605301	-	Pnap_2402	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2383	 67.00	0	2535955..2536257	-	100	121605302	-	Pnap_2403	-	antibiotic biosynthesis monooxygenase
2384	 66.98	0	2536335..2536979	-	214	121605303	-	Pnap_2404	-	glutathione S-transferase domain-containing protein
2385	 62.36	0	2537271..2537618	+	115	121605304	-	Pnap_2405	-	hypothetical protein
2386	 62.41	0	2537615..2538601	+	328	121605305	-	Pnap_2406	-	putative poly-gamma-glutamate biosynthesis enzyme
2387	 64.51	0	2538902..2540155	+	417	121605306	-	Pnap_2407	-	DEAD/DEAH box helicase domain-containing protein
2388	 63.76	0	2540291..2542936	+	881	121605307	-	Pnap_2408	-	pentapeptide repeat-containing protein
2389	 63.73	0	2543124..2545781	+	885	121605308	-	Pnap_2409	-	pentapeptide repeat-containing protein
2390	 62.21	0	2545878..2549153	+	1091	121605309	-	Pnap_2410	-	NHL repeat-containing protein
2391	 60.19	0	2549257..2549565	-	102	121605310	-	Pnap_2411	-	hypothetical protein
2392	 62.66	0	2549679..2550227	-	182	121605311	-	Pnap_2412	-	DSBA oxidoreductase
2393	 64.32	0	2550396..2550608	+	70	121605312	-	Pnap_2413	-	hypothetical protein
2394	 61.64	0	2550642..2551019	-	125	121605313	-	Pnap_2414	-	hypothetical protein
2395	 57.78	0	2551442..2551666	-	74	121605314	-	Pnap_2415	-	TOBE domain-containing protein
2396	 69.25	+1	2551777..2552589	-	270	121605315	-	Pnap_2416	-	ABC transporter related
2397	 65.45	0	2552599..2553501	-	300	121605316	-	Pnap_2417	-	binding-protein-dependent transport systems inner membrane component
2398	 66.41	0	2553523..2554686	-	387	121605317	-	Pnap_2418	-	alkanesulfonate monooxygenase
2399	 65.81	0	2554706..2555755	-	349	121605318	-	Pnap_2419	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
2400	 63.64	0	2555781..2556803	-	340	121605319	-	Pnap_2420	-	aliphatic sulfonate ABC transporter periplasmic ligand-binding protein
2401	 67.67	0	2556926..2557525	-	199	121605320	-	Pnap_2421	-	NADPH-dependent FMN reductase
2402	 63.47	0	2557586..2558617	-	343	121605321	-	Pnap_2422	-	sulfate ABC transporter, periplasmic sulfate-binding protein
2403	 62.77	0	2558764..2559045	+	93	121605322	-	Pnap_2423	-	hypothetical protein
2404	 69.02	+1	2559055..2560968	+	637	121605323	-	Pnap_2424	-	hypothetical protein
2405	 62.30	0	2561038..2562273	-	411	121605324	-	Pnap_2425	-	extracellular ligand-binding receptor
2406	 66.41	0	2562506..2563297	+	263	121605325	-	Pnap_2426	-	hypothetical protein
2407	 66.72	0	2563389..2565197	+	602	121605326	-	Pnap_2427	-	nitrite/sulfite reductase hemoprotein beta subunit
2408	 61.69	0	2565236..2565637	+	133	121605327	-	Pnap_2428	-	hypothetical protein
2409	 64.40	0	2565649..2566443	+	264	121605328	-	Pnap_2429	-	phosphoadenylyl-sulfate reductase (thioredoxin)
2410	 63.52	0	2566440..2567393	+	317	121605329	-	Pnap_2430	-	sulfate adenylyltransferase subunit 2
2411	 65.30	0	2567393..2568709	+	438	121605330	-	Pnap_2431	-	sulfate adenylyltransferase, large subunit
2412	 59.70	0	2568881..2569210	+	109	121605331	-	Pnap_2432	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
2413	 57.49	0	2569288..2570388	+	366	121605332	-	Pnap_2433	-	FAD-dependent pyridine nucleotide-disulphide oxidoreductase
2414	 64.14	0	2570465..2571769	+	434	121605333	-	Pnap_2434	-	permease for cytosine/purines, uracil, thiamine, allantoin
2415	 62.35	0	2571753..2572610	-	285	121605334	-	Pnap_2435	-	phosphomethylpyrimidine kinase
2416	 64.48	0	2573052..2574605	+	517	121605335	-	Pnap_2436	-	carbohydrate kinase, YjeF related protein
62.80	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.