IslandPathversion 1.0

IslandPath Analysis: Polaromonas naphthalenivorans CJ2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 62.80 STD DEV: 5.38
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291
4084 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1840	 57.72	0	1980352..1981614	+	420	121604759	-	Pnap_1857	-	dihydrolipoamide acetyltransferase
1841	 57.28	-1	1981645..1983114	+	489	121604760	-	Pnap_1858	-	dihydrolipoamide dehydrogenase
1842	 55.53	-1	1983134..1984237	+	367	121604761	-	Pnap_1859	-	AFG1 family ATPase
1843	 58.10	0	1984462..1984881	+	139	121604762	-	Pnap_1860	-	hypothetical protein
1844	 51.52	-2	1984891..1985649	-	252	121604763	-	Pnap_1861	-	protein phosphatase 2C domain-containing protein
1845	 52.94	-1	1985730..1985933	+	67	121604764	-	Pnap_1862	-	hypothetical protein
1846	 56.30	-1	1985933..1987939	+	668	121604765	-	Pnap_1863	-	helicase c2
1847	 55.15	-1	1987902..1988726	-	274	121604766	-	Pnap_1864	-	putative transmembrane protein
1848	 58.74	0	1988744..1989778	+	344	121604767	-	Pnap_1865	-	RluA family pseudouridine synthase
1849	 56.31	-1	1989882..1990547	+	221	121604768	-	Pnap_1866	-	putative transcriptional regulator
1850	 62.12	0	1990586..1992169	+	527	121604769	-	Pnap_1867	-	pseudouridine synthase
1851	 56.34	-1	1992298..1992723	+	141	121604770	-	Pnap_1868	-	nucleoside-diphosphate kinase
1852	 58.05	0	1992803..1993951	+	382	121604771	-	Pnap_1869	-	radical SAM protein
1853	 57.62	0	1993948..1994754	+	268	121604772	-	Pnap_1870	-	type IV pilus biogenesis/stability protein PilW
1854	 57.96	0	1994765..1995694	+	309	121604773	-	Pnap_1871	-	hypothetical protein
1855	 61.49	0	1995694..1996968	+	424	121604774	ispG	Pnap_1872	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
1856	 61.56	0	1996974..1998344	+	456	121604775	-	Pnap_1873	-	histidyl-tRNA synthetase
1857	 58.44	0	1998413..1999105	+	230	121604776	-	Pnap_1874	-	hypothetical protein
1858	 62.04	0	1999102..2000247	+	381	121604777	-	Pnap_1875	-	Pyrrolo-quinoline quinone
1859	 58.82	0	2000282..2001619	+	445	121604778	-	Pnap_1876	-	small GTP-binding protein
1860	 48.15	-2	2001676..2001945	+	89	121604779	-	Pnap_1877	-	RNA chaperone Hfq
1861	 57.38	-1	2001963..2003114	+	383	121604780	-	Pnap_1878	-	GTP-binding protein, HSR1-related
1862	 60.17	0	2003180..2004595	+	471	121604781	-	Pnap_1879	-	HflK protein
1863	 57.56	0	2004608..2005507	+	299	121604782	-	Pnap_1880	-	HflC protein
1864	 58.73	0	2005520..2005708	+	62	121604783	-	Pnap_1881	-	hypothetical protein
1865	 64.96	0	2005860..2007029	+	389	121604784	-	Pnap_1882	-	tRNA synthetase, class II (G, H, P and S)
1866	 65.47	0	2007118..2008458	+	446	121604785	-	Pnap_1883	-	adenylosuccinate synthetase
1867	 60.57	0	2008536..2009060	+	174	121604786	-	Pnap_1884	-	phosphoribosyltransferase
1868	 65.83	0	2009191..2010384	+	397	121604787	-	Pnap_1885	-	cystathionine beta-lyase
1869	 57.14	-1	2010453..2010641	+	62	121604788	-	Pnap_1886	-	hypothetical protein
1870	 63.83	0	2010785..2011843	-	352	121604789	-	Pnap_1887	-	tRNA 2-selenouridine synthase
1871	 64.89	0	2011840..2012457	-	205	121604790	-	Pnap_1888	-	GDSL family lipase
1872	 63.32	0	2012582..2013298	+	238	121604791	-	Pnap_1889	-	ABC transporter related
1873	 66.14	0	2013429..2014190	+	253	121604792	-	Pnap_1890	-	RNA methyltransferase
1874	 50.19	-2	2014293..2014553	-	86	121604793	-	Pnap_1891	-	hypothetical protein
1875	 63.05	0	2014716..2015102	+	128	121604794	-	Pnap_1892	-	cytochrome c, class I
1876	 61.77	0	2015120..2015446	-	108	121604795	-	Pnap_1893	-	hypothetical protein
1877	 63.67	0	2015745..2016677	-	310	121604796	-	Pnap_1894	-	Ku domain-containing protein
1878	 65.20	0	2016680..2017294	-	204	121604797	-	Pnap_1895	-	PfpI family intracellular peptidase
1879	 69.85	+1	2017502..2017972	+	156	121604798	-	Pnap_1896	-	CHRD domain-containing protein
1880	 65.07	0	2018240..2020624	+	794	121604799	-	Pnap_1897	-	radical SAM domain-containing protein
1881	 62.45	0	2020730..2021227	-	165	121604800	-	Pnap_1898	-	hypothetical protein
1882	 61.26	0	2021584..2023119	-	511	121604801	-	Pnap_1899	-	filamentation induced by cAMP protein Fic
1883	 67.78	0	2023210..2024109	-	299	121604802	-	Pnap_1900	-	L-carnitine dehydratase/bile acid-inducible protein F
1884	 63.12	0	2024260..2025444	-	394	121604803	-	Pnap_1901	-	4-hydroxybenzoate 3-monooxygenase
1885	 65.94	0	2025605..2026426	+	273	121604804	-	Pnap_1902	-	beta-ketoadipate pathway transcription regulator
1886	 64.76	0	2026438..2027172	-	244	121604805	-	Pnap_1903	-	ABC transporter related
1887	 62.61	0	2027169..2027933	-	254	121604806	-	Pnap_1904	-	ABC transporter related
1888	 62.93	0	2027926..2028942	-	338	121604807	-	Pnap_1905	-	inner-membrane translocator
1889	 63.31	0	2028939..2029802	-	287	121604808	-	Pnap_1906	-	inner-membrane translocator
1890	 62.54	0	2029847..2031034	-	395	121604809	-	Pnap_1907	-	extracellular ligand-binding receptor
1891	 59.39	0	2031195..2031689	-	164	121604810	-	Pnap_1908	-	flavodoxin/nitric oxide synthase
1892	 65.88	0	2032271..2032780	-	169	121604811	-	Pnap_1909	-	ISSod10, transposase OrfB
1893	 61.61	0	2032809..2033342	-	177	121604812	-	Pnap_1910	-	transposase and inactivated derivative
1894	 63.41	0	2033448..2034707	-	419	121604813	-	Pnap_1911	-	acyl-CoA dehydrogenase domain-containing protein
1895	 62.27	0	2034775..2035866	-	363	121604814	-	Pnap_1912	-	aminoglycoside phosphotransferase
1896	 63.91	0	2035897..2036622	-	241	121604815	-	Pnap_1913	-	CRP/FNR family transcriptional regulator
1897	 66.41	0	2036977..2037756	-	259	121604816	-	Pnap_1914	-	enoyl-CoA hydratase
1898	 64.94	0	2037758..2039320	-	520	121604817	-	Pnap_1915	-	3-hydroxybutyryl-CoA dehydrogenase
1899	 62.40	0	2039336..2040343	-	335	121604818	-	Pnap_1916	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
1900	 61.19	0	2040436..2040855	-	139	121604819	-	Pnap_1917	-	hypothetical protein
1901	 60.43	0	2040992..2041696	-	234	121604820	-	Pnap_1918	-	LexA repressor
1902	 60.77	0	2041822..2042787	+	321	121604821	-	Pnap_1919	-	asparaginase
1903	 57.84	0	2042834..2043490	-	218	121604822	adk	Pnap_1920	-	adenylate kinase
1904	 63.60	0	2043646..2044428	-	260	121604823	-	Pnap_1921	-	3-deoxy-D-manno-octulosonate cytidylyltransferase
1905	 59.56	0	2044436..2044618	-	60	121604824	-	Pnap_1922	-	hypothetical protein
1906	 63.57	0	2044599..2045630	-	343	121604825	-	Pnap_1923	-	tetraacyldisaccharide 4'-kinase
1907	 60.23	0	2045673..2046107	-	144	121604826	-	Pnap_1924	-	biopolymer transport protein ExbD/TolR
1908	 61.38	0	2046104..2046727	-	207	121604827	-	Pnap_1925	-	MotA/TolQ/ExbB proton channel
1909	 64.70	0	2047068..2048387	+	439	121604828	-	Pnap_1926	-	exodeoxyribonuclease VII, large subunit
1910	 57.04	-1	2048446..2049027	+	193	121604829	-	Pnap_1927	-	superoxide dismutase
1911	 59.60	0	2049097..2049591	-	164	121604830	-	Pnap_1928	-	hypothetical protein
1912	 60.46	0	2049705..2050010	-	101	121604831	-	Pnap_1929	-	TolA protein
1913	 55.98	-1	2050235..2051488	+	417	121604832	-	Pnap_1930	-	isocitrate dehydrogenase
1914	 56.44	-1	2051660..2051962	+	100	121604833	-	Pnap_1931	-	hypothetical protein
1915	 61.65	0	2052100..2052498	+	132	121604834	-	Pnap_1932	-	RNP-1 like RNA-binding protein
1916	 53.65	-1	2052978..2053415	+	145	121604835	-	Pnap_1933	-	ATP-dependent Clp protease adaptor protein ClpS
1917	 61.15	0	2053496..2055832	+	778	121604836	-	Pnap_1934	-	ATP-dependent Clp protease, ATP-binding subunit clpA
1918	 64.60	0	2056001..2057449	+	482	121604837	sbcB	Pnap_1935	-	exonuclease I
1919	 67.51	0	2057497..2058675	-	392	121604838	-	Pnap_1936	-	saccharopine dehydrogenase
1920	 66.44	0	2058816..2059247	+	143	121604839	-	Pnap_1937	-	AsnC family transcriptional regulator
1921	 67.39	0	2059251..2059937	-	228	121604840	-	Pnap_1938	-	glutathione S-transferase domain-containing protein
1922	 63.83	0	2059939..2060889	-	316	121604841	-	Pnap_1939	-	rhodanese domain-containing protein
1923	 65.67	0	2061041..2062342	+	433	121604842	-	Pnap_1940	-	PHB depolymerase family esterase
1924	 61.88	0	2062453..2062974	-	173	121604843	-	Pnap_1941	-	hypothetical protein
1925	 65.94	0	2063159..2065495	+	778	121604844	-	Pnap_1942	-	RNA-binding S1 domain-containing protein
1926	 67.11	0	2065635..2066771	-	378	121604845	-	Pnap_1943	-	iron-containing alcohol dehydrogenase
1927	 67.18	0	2066942..2067907	+	321	121604846	-	Pnap_1944	-	alpha/beta hydrolase domain-containing protein
1928	 60.69	0	2068883..2069836	-	317	121604847	-	Pnap_1946	-	glycine cleavage T protein (aminomethyl transferase)
1929	 61.41	0	2069925..2070932	+	335	121604848	-	Pnap_1947	-	aminodeoxychorismate lyase
1930	 67.18	0	2070935..2071717	+	260	121604849	-	Pnap_1948	-	dTMP kinase
1931	 64.44	0	2071714..2072835	+	373	121604850	-	Pnap_1949	-	DNA-directed DNA polymerase
1932	 54.07	-1	2072859..2073239	+	126	121604851	-	Pnap_1950	-	type IV pilus assembly PilZ
1933	 53.01	-1	2073271..2074068	+	265	121604852	-	Pnap_1951	-	TatD family hydrolase
1934	 53.72	-1	2074065..2074736	+	223	121604853	-	Pnap_1952	-	ankyrin
1935	 62.60	0	2074750..2076126	-	458	121604854	-	Pnap_1953	-	PAS/PAC sensor signal transduction histidine kinase
1936	 67.63	0	2076136..2077593	-	485	121604855	-	Pnap_1954	-	nickel-dependent hydrogenase, large subunit
1937	 66.77	0	2077590..2078600	-	336	121604856	-	Pnap_1955	-	NADH ubiquinone oxidoreductase, 20 kDa subunit
1938	 66.87	0	2078603..2080063	-	486	121604857	-	Pnap_1956	-	two component, sigma54 specific, Fis family transcriptional regulator
1939	 64.29	0	2080060..2081868	-	602	121604858	-	Pnap_1957	-	formyl transferase domain-containing protein
62.80	MEAN

5.38	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.