IslandPath Analysis: Polaromonas naphthalenivorans CJ2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.80   STD DEV: 5.38
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291
4084 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1270	 69.31	+1	1372172..1373455	-	427	121604189	-	Pnap_1282	-	cytochrome c, class I
1271	 69.59	+1	1373452..1374237	-	261	121604190	-	Pnap_1283	-	putative cytochrome c
1272	 67.64	0	1374302..1375120	-	272	121604191	-	Pnap_1284	-	alpha/beta hydrolase fold
1273	 66.76	0	1375117..1376187	-	356	121604192	-	Pnap_1285	-	hypothetical protein
1274	 69.23	+1	1376267..1376578	-	103	121604193	-	Pnap_1286	-	ferredoxin
1275	 63.45	0	1376709..1377236	+	175	121604194	-	Pnap_1287	-	GCN5-related N-acetyltransferase
1276	 67.21	0	1377744..1378112	+	122	121604195	-	Pnap_1288	-	hypothetical protein
1277	 64.74	0	1378230..1379165	+	311	121604196	-	Pnap_1289	-	hypothetical protein
1278	 64.96	0	1379656..1380360	-	234	121604197	-	Pnap_1290	-	short chain dehydrogenase
1279	 60.58	0	1380439..1381440	-	333	121604198	-	Pnap_1291	-	alcohol dehydrogenase
1280	 65.29	0	1381539..1381829	-	96	121604199	-	Pnap_1292	-	short-chain dehydrogenase/reductase SDR
1281	 65.00	0	1381982..1382581	-	199	121604200	-	Pnap_1293	-	TetR family transcriptional regulator
1282	 56.63	-1	1382867..1384102	+	411	121604201	-	Pnap_1294	-	IS605 family transposase OrfB
1283	 63.15	0	1384141..1385163	-	340	121604202	-	Pnap_1295	-	LysR family transcriptional regulator
1284	 69.52	+1	1385343..1386254	+	303	121604203	-	Pnap_1296	-	alpha/beta hydrolase domain-containing protein
1285	 69.78	+1	1386306..1386755	+	149	121604204	-	Pnap_1297	-	secretion protein HlyD
1286	 70.08	+1	1386789..1387550	+	253	121604205	-	Pnap_1298	-	secretion protein HlyD
1287	 65.87	0	1387583..1390828	+	1081	121604206	-	Pnap_1299	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
1288	 70.08	+1	1390870..1392276	+	468	121604207	-	Pnap_1300	-	RND efflux system outer membrane lipoprotein
1289	 69.14	+1	1392448..1393701	+	417	121604208	-	Pnap_1301	-	methyltransferase small
1290	 69.17	+1	1393739..1394695	+	318	121604209	-	Pnap_1302	-	dihydrouridine synthase, DuS
1291	 63.14	0	1394839..1395348	+	169	121604210	-	Pnap_1303	-	hypothetical protein
1292	 66.67	0	1395460..1396641	-	393	121604211	-	Pnap_1304	-	nitric oxide dioxygenase
1293	 71.51	+1	1396832..1398421	+	529	121604212	-	Pnap_1305	-	anaerobic nitric oxide reductase transcription regulator
1294	 64.73	0	1398526..1398990	-	154	121604213	-	Pnap_1306	-	hypothetical protein
1295	 65.76	0	1399239..1399901	+	220	121604214	-	Pnap_1307	-	phospholipase/carboxylesterase
1296	 66.41	0	1400006..1401589	+	527	121604215	-	Pnap_1308	-	glutamate--cysteine ligase
1297	 67.49	0	1401766..1402374	-	202	121604216	-	Pnap_1309	-	hypothetical protein
1298	 57.52	0	1402652..1403143	-	163	121604217	-	Pnap_1310	-	hypothetical protein
1299	 65.92	0	1403585..1403986	-	133	121604218	-	Pnap_1311	-	hypothetical protein
1300	 63.96	0	1404031..1404990	+	319	121604219	-	Pnap_1312	-	GTP-binding protein, HSR1-related
1301	 68.56	+1	1405129..1405497	+	122	121604220	-	Pnap_1313	-	hypothetical protein
1302	 62.65	0	1405557..1406129	+	190	121604221	-	Pnap_1314	-	hemerythrin HHE cation binding domain-containing protein
1303	 61.65	0	1406308..1407024	+	238	121604222	-	Pnap_1315	-	CRP/FNR family transcriptional regulator
1304	 64.52	0	1407200..1407943	+	247	121604223	-	Pnap_1316	-	cyclic nucleotide-binding domain-containing protein
1305	 62.41	0	1408046..1408327	+	93	121604224	-	Pnap_1317	-	hypothetical protein
1306	 67.90	0	1408548..1410494	+	648	121604225	-	Pnap_1318	-	hypothetical protein
1307	 64.28	0	1410542..1411672	+	376	121604226	-	Pnap_1319	-	OmpA/MotB domain-containing protein
1308	 58.15	0	1412240..1412509	+	89	121604227	-	Pnap_1320	-	hypothetical protein
1309	 59.73	0	1412506..1414134	+	542	121604228	-	Pnap_1321	-	IS605 family transposase OrfB
1310	 62.12	0	1414184..1414579	+	131	121604229	-	Pnap_1322	-	hypothetical protein
1311	 64.43	0	1414774..1415220	+	148	121604230	-	Pnap_1323	-	heat shock protein Hsp20
1312	 68.20	+1	1415256..1415843	+	195	121604231	-	Pnap_1324	-	heat shock protein Hsp20
1313	 64.00	0	1415957..1416892	+	311	121604232	-	Pnap_1325	-	phosphoesterase, DHHA1
1314	 62.60	0	1417235..1418635	-	466	121604233	-	Pnap_1326	-	nitrite reductase, copper-containing
1315	 63.71	0	1418866..1419372	-	168	121604234	-	Pnap_1327	-	BadM/Rrf2 family transcriptional regulator
1316	 63.64	0	1419586..1421862	+	758	121604235	-	Pnap_1328	-	putative nitric oxide reductase (subunit B) transmembrane protein
1317	 60.61	0	1421959..1422222	+	87	121604236	-	Pnap_1329	-	hypothetical protein
1318	 65.60	0	1422288..1422755	+	155	121604237	-	Pnap_1330	-	invasion gene expression up-regulator, SirB
1319	 65.87	0	1423058..1423684	+	208	121604238	-	Pnap_1331	-	hypothetical protein
1320	 66.67	0	1423788..1424267	-	159	121604239	-	Pnap_1332	-	thioredoxin
1321	 57.79	0	1424291..1424842	-	183	121604240	-	Pnap_1333	-	cytochrome B561
1322	 60.57	0	1425059..1425616	+	185	121604241	-	Pnap_1334	-	putative lipoprotein
1323	 65.32	0	1425586..1426251	-	221	121604242	-	Pnap_1335	-	pseudouridine synthase
1324	 67.04	0	1426285..1428165	-	626	121604243	-	Pnap_1336	-	amidohydrolase 3
1325	 67.96	0	1428233..1428850	-	205	121604244	-	Pnap_1337	-	antibiotic biosynthesis monooxygenase
1326	 62.67	0	1428860..1429510	-	216	121604245	-	Pnap_1338	-	isochorismatase hydrolase
1327	 68.88	+1	1429632..1430534	+	300	121604246	-	Pnap_1339	-	LysR family transcriptional regulator
1328	 57.81	0	1430550..1431125	-	191	121604247	-	Pnap_1340	-	hypothetical protein
1329	 54.25	-1	1431235..1431693	-	152	121604248	-	Pnap_1341	-	hypothetical protein
1330	 71.04	+1	1431777..1432667	-	296	121604249	-	Pnap_1342	-	peptidase M23B
1331	 66.50	0	1432806..1434041	-	411	121604250	-	Pnap_1343	-	geranylgeranyl reductase
1332	 62.56	0	1434192..1434410	-	72	121604251	-	Pnap_1344	-	hypothetical protein
1333	 63.10	0	1434642..1434809	-	55	121604252	-	Pnap_1345	-	DNA polymerase, beta-like region
1334	 38.10	-2	1435252..1435461	-	69	121604253	-	Pnap_1346	-	cold-shock DNA-binding domain-containing protein
1335	 36.67	-2	1435451..1436080	-	209	121604254	-	Pnap_1347	-	retron reverse transcriptase
1336	 36.67	-2	1436121..1436630	-	169	121604255	-	Pnap_1348	-	retron reverse transcriptase
1337	 48.44	-2	1437305..1437496	-	63	121604256	-	Pnap_1349	-	hypothetical protein
1338	 56.08	-1	1437493..1437747	-	84	121604257	-	Pnap_1350	-	hypothetical protein
1339	 63.47	0	1437747..1439624	-	625	121604258	-	Pnap_1351	-	glutaminyl-tRNA synthetase
1340	 62.47	0	1439759..1440211	+	150	121604259	-	Pnap_1352	-	hypothetical protein
1341	 62.94	0	1440339..1440929	-	196	121604260	-	Pnap_1353	-	hypothetical protein
1342	 54.67	-1	1441308..1442366	+	352	121604261	-	Pnap_1354	-	porin
1343	 65.43	0	1442521..1443168	-	215	121604262	-	Pnap_1355	-	hypothetical protein
1344	 59.71	0	1443279..1444112	+	277	121604263	-	Pnap_1356	-	putative undecaprenol kinase
1345	 65.73	0	1444121..1444972	-	283	121604264	-	Pnap_1357	-	hypothetical protein
1346	 59.42	0	1445050..1445877	-	275	121604265	-	Pnap_1358	-	20S proteasome, A and B subunits
1347	 66.86	0	1445917..1448529	-	870	121604266	-	Pnap_1359	-	DNA mismatch repair protein MutS
1348	 68.80	+1	1448698..1449588	-	296	121604267	-	Pnap_1360	-	hypothetical protein
1349	 71.04	+1	1449679..1450593	+	304	121604268	-	Pnap_1361	-	LysR family transcriptional regulator
1350	 62.61	0	1450788..1451132	+	114	121604269	-	Pnap_1362	-	hypothetical protein
1351	 69.10	+1	1451152..1451562	+	136	121604270	-	Pnap_1363	-	hypothetical protein
1352	 58.11	0	1452343..1453125	+	260	121604271	-	Pnap_1364	-	hypothetical protein
1353	 69.04	+1	1453157..1455391	-	744	121604272	-	Pnap_1365	-	protein of unknown function DUF893, YccS/YhfK
1354	 61.25	0	1455776..1456588	+	270	121604273	-	Pnap_1366	-	phospholipid/glycerol acyltransferase
1355	 64.45	0	1456602..1457414	+	270	121604274	-	Pnap_1367	-	glycosyl transferase family protein
1356	 64.23	0	1457411..1458148	-	245	121604275	fabG	Pnap_1368	-	3-ketoacyl-(acyl-carrier-protein) reductase
1357	 66.89	0	1458145..1458600	-	151	121604276	-	Pnap_1369	-	hypothetical protein
1358	 65.83	0	1458669..1459505	-	278	121604277	-	Pnap_1370	-	hypothetical protein
1359	 65.48	0	1459537..1460634	-	365	121604278	-	Pnap_1371	-	3-oxoacyl-(acyl carrier protein) synthase I
1360	 63.76	0	1460764..1461486	-	240	121604279	-	Pnap_1372	-	phosphoesterase, PA-phosphatase related
1361	 67.79	0	1461483..1462286	-	267	121604280	-	Pnap_1373	-	polysaccharide deacetylase
1362	 67.05	0	1462279..1464615	-	778	121604281	-	Pnap_1374	-	hypothetical protein
1363	 63.44	0	1464624..1465274	-	216	121604282	-	Pnap_1375	-	putative transmembrane protein
1364	 63.30	0	1465278..1466258	-	326	121604283	-	Pnap_1376	-	lipid A biosynthesis acyltransferase
1365	 64.61	0	1467915..1468595	-	226	121604284	-	Pnap_1378	-	putative transmembrane protein
1366	 61.95	0	1468592..1468888	-	98	121604285	-	Pnap_1379	-	acyl carrier protein
1367	 65.36	0	1468973..1469965	-	330	121604286	-	Pnap_1380	-	inositol-phosphate phosphatase
1368	 65.28	0	1470027..1470962	+	311	121604287	-	Pnap_1381	-	tRNA/rRNA methyltransferase (SpoU)
1369	 65.64	0	1470972..1471751	+	259	121604288	-	Pnap_1382	-	serine O-acetyltransferase
62.80	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.