IslandPath Analysis: Polaromonas naphthalenivorans CJ2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 62.80   STD DEV: 5.38
Polaromonas naphthalenivorans CJ2, complete genome - 1..4410291
4084 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
959	 51.28	-2	1019575..1020432	-	285	121603878	-	Pnap_0969	-	hypothetical protein
960	 62.49	0	1020439..1021659	-	406	121603879	-	Pnap_0970	-	phage integrase family protein
961	 62.71	0	1021978..1022634	-	218	121603880	-	Pnap_0971	-	urease accessory protein UreG
962	 67.81	0	1022673..1023371	-	232	121603881	-	Pnap_0972	-	urease accessory protein UreF
963	 66.99	0	1023368..1023994	-	208	121603882	-	Pnap_0973	-	UreE urease accessory domain-containing protein
964	 64.34	0	1024002..1025720	-	572	121603883	ureC	Pnap_0974	-	urease subunit alpha
965	 63.40	0	1025720..1026025	-	101	121603884	ureB	Pnap_0975	-	urease subunit beta
966	 66.16	0	1026039..1026632	-	197	121603885	-	Pnap_0976	-	HupE/UreJ protein
967	 64.69	0	1026751..1027053	-	100	121603886	ureA	Pnap_0977	-	urease subunit gamma
968	 64.34	0	1027200..1030727	+	1175	121603887	-	Pnap_0978	-	integral membrane sensor hybrid histidine kinase
969	 67.16	0	1030720..1031730	+	336	121603888	-	Pnap_0979	-	response regulator receiver protein
970	 58.33	0	1032077..1032316	+	79	121603889	-	Pnap_0980	-	hypothetical protein
971	 61.63	0	1032387..1032644	+	85	121603890	-	Pnap_0981	-	translation initiation factor IF-1
972	 59.82	0	1032714..1034072	-	452	121603891	-	Pnap_0982	-	C4-dicarboxylate transporter DctA
973	 57.89	0	1034297..1034581	+	94	121603892	-	Pnap_0983	-	hypothetical protein
974	 67.31	0	1034639..1036960	-	773	121603893	-	Pnap_0984	-	DEAD_2 domain-containing protein
975	 60.07	0	1037018..1037608	-	196	121603894	-	Pnap_0985	-	signal transduction protein
976	 65.14	0	1037694..1038086	+	130	121603895	-	Pnap_0986	-	hypothetical protein
977	 59.49	0	1038158..1039342	+	394	121603896	-	Pnap_0987	-	hypothetical protein
978	 62.70	0	1039564..1040067	+	167	121603897	-	Pnap_0988	-	hypothetical protein
979	 63.83	0	1040118..1041245	+	375	121603898	-	Pnap_0989	-	endonuclease/exonuclease/phosphatase
980	 68.94	+1	1041316..1042677	+	453	121603899	-	Pnap_0990	-	hypothetical protein
981	 62.14	0	1042674..1043447	+	257	121603900	-	Pnap_0991	-	band 7 protein
982	 64.40	0	1043487..1043795	-	102	121603901	-	Pnap_0992	-	ethyl tert-butyl ether degradation EthD
983	 61.02	0	1043932..1045011	+	359	121603902	-	Pnap_0993	-	hypothetical protein
984	 55.56	-1	1045125..1045538	-	137	121603903	-	Pnap_0994	-	hypothetical protein
985	 39.10	-2	1045609..1047618	-	669	121603904	-	Pnap_0995	-	hypothetical protein
986	 37.98	-2	1047602..1049515	-	637	121603905	-	Pnap_0996	-	ATP-dependent OLD family endonuclease
987	 60.75	0	1049613..1050896	+	427	121603906	-	Pnap_0997	-	twin-arginine translocation pathway signal
988	 64.51	0	1050993..1052567	+	524	121603907	-	Pnap_0998	-	inner-membrane translocator
989	 62.05	0	1052571..1053782	+	403	121603908	-	Pnap_0999	-	inner-membrane translocator
990	 61.09	0	1053779..1054657	+	292	121603909	-	Pnap_1000	-	ABC transporter related
991	 57.76	0	1054647..1054994	+	115	121603910	-	Pnap_1001	-	hypothetical protein
992	 62.50	0	1055157..1055852	+	231	121603911	-	Pnap_1002	-	ABC transporter related
993	 63.51	0	1055959..1056402	-	147	121603912	-	Pnap_1003	-	hypothetical protein
994	 68.71	+1	1056572..1057402	-	276	121603913	-	Pnap_1004	-	urease accessory protein UreD
995	 69.18	+1	1057546..1060134	-	862	121603914	-	Pnap_1005	-	cyanophycin synthetase
996	 67.61	0	1060134..1062368	-	744	121603915	-	Pnap_1006	-	cyanophycin synthetase
997	 65.77	0	1062711..1065065	+	784	121603916	-	Pnap_1007	-	ABC transporter related
998	 66.05	0	1065088..1065570	+	160	121603917	-	Pnap_1008	-	hypothetical protein
999	 48.99	-2	1065673..1066068	+	131	121603918	-	Pnap_1009	-	hypothetical protein
1000	 67.06	0	1066337..1068634	-	765	121603919	-	Pnap_1010	-	malic enzyme
1001	 66.67	0	1068704..1069891	+	395	121603920	-	Pnap_1011	-	hypothetical protein
1002	 66.67	0	1069900..1070409	-	169	121603921	-	Pnap_1012	-	hypothetical protein
1003	 66.06	0	1070453..1071436	+	327	121603922	-	Pnap_1013	-	hypothetical protein
1004	 61.81	0	1071690..1072802	+	370	121603923	-	Pnap_1014	-	putative substrate-binding periplasmic (PBP) ABC transporter protein
1005	 66.13	0	1072817..1073752	-	311	121603924	-	Pnap_1015	-	LysR family transcriptional regulator
1006	 66.67	0	1073857..1074945	+	362	121603925	-	Pnap_1016	-	tartrate dehydrogenase
1007	 65.25	0	1075146..1076060	+	304	121603926	-	Pnap_1017	-	hypothetical protein
1008	 67.93	0	1076175..1077521	+	448	121603927	-	Pnap_1018	-	hydroxypyruvate reductase
1009	 64.28	0	1077549..1078553	-	334	121603928	-	Pnap_1019	-	hypothetical protein
1010	 65.77	0	1078630..1079748	-	372	121603929	-	Pnap_1020	-	FMN-dependent alpha-hydroxy acid dehydrogenase
1011	 63.27	0	1079782..1080753	-	323	121603930	-	Pnap_1021	-	hypothetical protein
1012	 69.21	+1	1080834..1082285	-	483	121603931	-	Pnap_1022	-	aldehyde dehydrogenase
1013	 68.36	+1	1082381..1083970	-	529	121603932	-	Pnap_1023	-	benzoylformate decarboxylase
1014	 69.06	+1	1084087..1085004	+	305	121603933	-	Pnap_1024	-	LysR family transcriptional regulator
1015	 64.51	0	1085386..1085802	-	138	121603934	-	Pnap_1025	-	hypothetical protein
1016	 66.54	0	1086041..1086853	+	270	121603935	-	Pnap_1026	-	methyltransferase type 11
1017	 66.22	0	1087316..1087987	+	223	121603936	-	Pnap_1027	-	XRE family transcriptional regulator
1018	 62.42	0	1088092..1088844	+	250	121603937	-	Pnap_1028	-	extracellular solute-binding protein
1019	 62.98	0	1088888..1089538	+	216	121603938	-	Pnap_1029	-	polar amino acid ABC transporter, inner membrane subunit
1020	 64.21	0	1089535..1090266	+	243	121603939	-	Pnap_1030	-	ABC transporter related
1021	 68.67	+1	1090277..1091572	+	431	121603940	-	Pnap_1031	-	FAD dependent oxidoreductase
1022	 68.42	+1	1091655..1092281	-	208	121603941	-	Pnap_1032	-	methyltransferase type 11
1023	 55.86	-1	1092586..1092918	+	110	121603942	-	Pnap_1033	-	cytochrome c, class I
1024	 67.04	0	1093000..1095399	-	799	121603943	-	Pnap_1034	-	aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding
1025	 64.76	0	1095396..1096916	-	506	121603944	-	Pnap_1035	-	molybdopterin dehydrogenase, FAD-binding
1026	 68.00	0	1097180..1098754	+	524	121603945	-	Pnap_1036	-	ABC transporter related
1027	 66.94	0	1098744..1099826	+	360	121603946	-	Pnap_1037	-	inner-membrane translocator
1028	 65.58	0	1099826..1100746	+	306	121603947	-	Pnap_1038	-	inner-membrane translocator
1029	 63.63	0	1100828..1101979	+	383	121603948	-	Pnap_1039	-	basic membrane lipoprotein
1030	 64.27	0	1102076..1103116	+	346	121603949	-	Pnap_1040	-	adenosine deaminase
1031	 69.93	+1	1103146..1104432	+	428	121603950	-	Pnap_1041	-	hypothetical protein
1032	 57.29	-1	1104559..1104942	+	127	121603951	-	Pnap_1042	-	hypothetical protein
1033	 59.07	0	1104974..1105960	-	328	121603952	-	Pnap_1043	-	hypothetical protein
1034	 64.27	0	1106306..1107391	+	361	121603953	-	Pnap_1044	-	basic membrane lipoprotein
1035	 65.41	0	1107388..1108023	+	211	121603954	-	Pnap_1045	-	hypothetical protein
1036	 63.78	0	1108020..1108400	+	126	121603955	-	Pnap_1046	-	putative 6-pyruvoyl tetrahydropterin synthase
1037	 64.19	0	1108427..1109719	+	430	121603956	-	Pnap_1047	-	guanine deaminase
1038	 56.67	-1	1109747..1110046	-	99	121603957	-	Pnap_1048	-	hypothetical protein
1039	 58.67	0	1110192..1110791	+	199	121603958	dcd	Pnap_1049	-	deoxycytidine triphosphate deaminase
1040	 65.98	0	1110888..1111763	-	291	121603959	-	Pnap_1050	-	integral membrane protein
1041	 63.20	0	1111861..1112235	-	124	121603960	-	Pnap_1051	-	hypothetical protein
1042	 62.33	0	1112279..1112647	-	122	121603961	-	Pnap_1052	-	TraR/DksA family transcriptional regulator
1043	 67.82	0	1112816..1113682	+	288	121603962	-	Pnap_1053	-	integral membrane protein
1044	 56.81	-1	1113682..1113894	+	70	121603963	-	Pnap_1054	-	hypothetical protein
1045	 59.24	0	1113950..1114636	-	228	121603964	-	Pnap_1055	-	outer membrane protein
1046	 58.78	0	1114965..1115357	+	130	121603965	-	Pnap_1056	-	hypothetical protein
1047	 63.86	0	1115542..1116432	+	296	121603966	-	Pnap_1057	-	protein of unknown function, zinc metallopeptidase putative
1048	 58.71	0	1116710..1117777	-	355	121603967	-	Pnap_1058	-	IS605 family transposase OrfB
1049	 64.59	0	1118025..1119035	+	336	121603968	-	Pnap_1059	-	UDP-glucose 4-epimerase
1050	 62.65	0	1119132..1120028	-	298	121603969	-	Pnap_1060	-	transglutaminase domain-containing protein
1051	 62.01	0	1120192..1121136	-	314	121603970	-	Pnap_1061	-	transglutaminase domain-containing protein
1052	 61.20	0	1121203..1122135	-	310	121603971	-	Pnap_1062	-	hypothetical protein
1053	 61.56	0	1122230..1123228	-	332	121603972	-	Pnap_1063	-	transglutaminase domain-containing protein
1054	 60.36	0	1123225..1125777	-	850	121603973	-	Pnap_1064	-	hypothetical protein
1055	 60.19	0	1125856..1129221	-	1121	121603974	-	Pnap_1065	-	transglutaminase domain-containing protein
1056	 63.57	0	1129538..1131118	-	526	121603975	-	Pnap_1066	-	hypothetical protein
1057	 60.71	0	1131671..1132678	-	335	121603976	-	Pnap_1067	-	fructose-1,6-bisphosphatase
1058	 64.45	0	1132725..1135472	-	915	121603977	-	Pnap_1068	-	aminopeptidase N
62.80	MEAN

5.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.