IslandPath Analysis: Porphyromonas gingivalis W83



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.73   STD DEV: 4.83
Porphyromonas gingivalis W83, complete genome - 1..2343476
1909 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
789	 48.78	0	971320..971811	-	163	34540669	-	PG0908	-	G/U mismatch-specific DNA glycosylase, putative
790	 50.46	0	971828..973129	-	433	34540670	-	PG0909	-	hypothetical protein
791	 47.29	0	973184..973756	-	190	34540671	-	PG0910	-	FHA domain-containing protein
792	 38.51	-2	973881..975446	-	521	34540672	-	PG0912	-	polysaccharide transport protein, putative
793	 45.10	0	975794..976507	-	237	34540673	-	PG0914	-	hypothetical protein
794	 38.68	-2	976725..977117	+	130	34540674	-	PG0915	-	hypothetical protein
795	 43.43	-1	977792..978187	-	131	34540675	-	PG0917	-	GtrA family protein
796	 50.40	0	978153..978908	-	251	34540676	-	PG0918	-	hypothetical protein
797	 50.96	0	979075..980424	-	449	34540677	pyrC	PG0919	-	dihydroorotase
798	 48.31	0	980435..981115	-	226	34540678	-	PG0920	-	glycosyl transferase, group 2 family protein
799	 49.84	0	981318..982541	-	407	34540679	-	PG0922	-	hypothetical protein
800	 45.83	0	982569..982904	-	111	34540680	rbfA	PG0923	-	ribosome-binding factor A
801	 51.47	0	982943..983758	-	271	34540681	-	PG0924	-	5'-nucleotidase
802	 52.68	0	983755..984369	-	204	34540682	tmk	PG0925	-	thymidine kinase
803	 53.07	0	984497..984724	-	75	34540683	-	PG0926	-	hypothetical protein
804	 51.80	0	984724..985140	-	138	34540684	-	PG0927	-	hypothetical protein
805	 48.68	0	985152..986708	-	518	34540685	-	PG0928	-	response regulator
806	 30.64	-2	986757..987239	-	160	34540686	-	PG0929	-	hypothetical protein
807	 54.62	+1	987243..987632	-	129	34540687	-	PG0930	-	hypothetical protein
808	 53.00	0	988643..989893	+	416	34540688	-	PG0932	-	DNA polymerase III, delta prime subunit, putative
809	 52.27	0	990137..992296	+	719	34540689	-	PG0933	-	elongation factor G
810	 50.50	0	992504..994408	-	634	34540690	-	PG0934	-	hypothetical protein
811	 49.33	0	994387..995211	-	274	34540691	ispE	PG0935	-	4-diphosphocytidyl-2C-methyl-D-erythritol kinase
812	 52.07	0	995240..996541	-	433	34540692	-	PG0936	-	xanthine/uracil permease family protein
813	 50.48	0	996562..997284	-	240	34540693	-	PG0937	-	hypothetical protein
814	 54.54	+1	997284..1000475	-	1063	34540694	-	PG0938	-	calcium-transporting ATPase
815	 44.95	0	1002203..1002598	+	131	34540695	-	PG0942	-	ISPg5, transposase Orf1
816	 50.05	0	1002652..1003590	+	312	34540696	-	PG0943	-	ISPg5, transposase Orf2
817	 52.82	0	1005194..1006522	-	442	34540697	-	PG0945	-	ABC transporter, permease protein, putative
818	 56.25	+1	1006527..1007486	-	319	34540698	-	PG0946	-	ABC transporter, ATP-binding protein
819	 50.21	0	1007489..1007962	-	157	34540699	-	PG0947	-	hypothetical protein
820	 52.12	0	1008031..1008807	+	258	34540700	-	PG0948	-	AMP nucleosidase
821	 49.90	0	1008826..1009833	+	335	34540701	-	PG0949	-	hypothetical protein
822	 49.87	0	1010001..1010381	+	126	34540702	gcvH	PG0950	-	glycine cleavage system protein H
823	 50.49	0	1010382..1010888	+	168	34540703	purE	PG0951	-	phosphoribosylaminoimidazole carboxylase, PurE protein
824	 49.89	0	1011062..1012807	+	581	34540704	ispG	PG0952	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
825	 50.80	0	1012864..1013298	+	144	34540705	dut	PG0953	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
826	 47.41	0	1013326..1015065	+	579	34540706	-	PG0954	-	TPR domain-containing protein
827	 46.65	0	1014972..1015925	+	317	34540707	-	PG0955	-	hypothetical protein
828	 49.15	0	1015937..1017232	+	431	34540708	-	PG0956	-	M24/M37 family peptidase putative
829	 48.15	0	1017220..1018191	+	323	34540709	ribF	PG0957	-	riboflavin biosynthesis protein RibF
830	 46.36	0	1018225..1019460	-	411	34540710	-	PG0958	-	ribonuclease BN, putative
831	 50.40	0	1020113..1021231	-	372	34540711	mrp	PG0959	-	ATP-binding Mrp/Nbp35 family protein
832	 50.61	0	1021251..1021985	-	244	34540712	trmB	PG0960	-	tRNA (guanine-N(7))-methyltransferase
833	 49.09	0	1022033..1022362	-	109	34540713	-	PG0961	-	hypothetical protein
834	 49.26	0	1022417..1023898	-	493	34540714	proS	PG0962	-	prolyl-tRNA synthetase
835	 40.24	-1	1024177..1024422	-	81	34540715	-	PG0963	-	hypothetical protein
836	 47.00	0	1025201..1025866	-	221	34540716	-	PG0965	-	phosphatidylserine decarboxylase
837	 39.98	-1	1026968..1027885	+	305	34540717	mrr	PG0968	-	Mrr restriction system protein
838	 51.97	0	1028291..1029508	-	405	34540718	-	PG0969	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase, putative
839	 45.77	0	1029746..1030903	+	385	34540719	-	PG0970	-	ISPg4, transposase
840	 38.23	-2	1031086..1032801	+	571	34540720	-	PG0971	-	McrBC restriction endonuclease system, McrB subunit, putative
841	 39.74	-1	1032808..1034103	+	431	34540721	-	PG0972	-	hypothetical protein
842	 51.68	0	1034307..1036622	+	771	34540722	-	PG0973	-	alpha-1,2-mannosidase family protein
843	 53.37	0	1037424..1038416	+	330	34540723	-	PG0975	-	PhoH family protein
844	 52.02	0	1038466..1039407	+	313	34540724	hemH	PG0976	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
845	 49.32	0	1039439..1040176	+	245	34540725	ubiE	PG0977	-	ubiquinone/menaquinone biosynthesis methyltransferase
846	 52.80	0	1040173..1040922	+	249	34540726	aroE	PG0978	-	shikimate 5-dehydrogenase
847	 54.72	+1	1040892..1041050	+	52	34540727	-	PG0979	-	hypothetical protein
848	 51.83	0	1041037..1043274	+	745	34540728	-	PG0980	-	hypothetical protein
849	 36.88	-2	1044450..1046702	+	750	34540729	-	PG0982	-	TPR domain-containing protein
850	 42.51	-1	1046803..1047009	-	68	34540730	-	PG0984	-	hypothetical protein
851	 55.82	+1	1047070..1047576	+	168	34540731	-	PG0985	-	ECF subfamily RNA polymerase sigma factor
852	 53.30	0	1047566..1048126	+	186	34540732	-	PG0986	-	hypothetical protein
853	 47.62	0	1048142..1048918	+	258	34540733	-	PG0987	-	hypothetical protein
854	 45.98	0	1050789..1051136	-	115	34540734	rplT	PG0989	-	50S ribosomal protein L20
855	 42.93	-1	1051249..1051446	-	65	34540735	rpmI	PG0990	-	50S ribosomal protein L35
856	 45.05	0	1051524..1052129	-	201	34540736	infC	PG0991	-	translation initiation factor IF-3
857	 47.40	0	1052233..1054194	-	653	34540737	thrS	PG0992	-	threonyl-tRNA synthetase
858	 34.34	-2	1055061..1055159	+	32	34540738	-	PG0994	-	hypothetical protein
859	 39.32	-1	1055559..1055675	-	38	34540739	-	PG0995	-	hypothetical protein
860	 50.17	0	1055732..1056640	+	302	34540740	-	PG0996	-	hypothetical protein
861	 50.19	0	1056806..1057072	+	88	34540741	-	PG0997	-	transcriptional regulator, putative
862	 44.79	0	1057069..1057164	+	31	34540742	-	PG0998	-	hypothetical protein
863	 37.36	-2	1057166..1057711	+	181	34540743	-	PG0999	-	hypothetical protein
864	 47.24	0	1057734..1058366	+	210	34540744	-	PG1000	-	hypothetical protein
865	 47.11	0	1058370..1058906	+	178	34540745	-	PG1001	-	hypothetical protein
866	 45.48	0	1058911..1059297	+	128	34540746	-	PG1002	-	hypothetical protein
867	 44.91	0	1059372..1060364	+	330	34540747	-	PG1003	-	hypothetical protein
868	 51.54	0	1060523..1062802	-	759	34540748	-	PG1004	-	prolyl oligopeptidase family protein
869	 52.36	0	1063113..1063853	-	246	34540749	-	PG1005	-	putative lipoprotein
870	 50.65	0	1063884..1066568	-	894	34540750	-	PG1006	-	hypothetical protein
871	 50.54	0	1066608..1066979	-	123	34540751	-	PG1007	-	GntR family transcriptional regulator
872	 48.09	0	1066976..1067734	-	252	34540752	-	PG1008	-	hypothetical protein
873	 43.63	-1	1067731..1068585	-	284	34540753	-	PG1009	-	hypothetical protein
874	 49.52	0	1068599..1069426	-	275	34540754	-	PG1010	-	ABC transporter, ATP-binding protein
875	 54.53	+1	1070179..1071570	-	463	34540755	-	PG1012	-	tRNA-i(6)A37 modification enzyme MiaB
876	 51.84	0	1071874..1073370	+	498	34540756	-	PG1013	-	acetyl-CoA hydrolase/transferase family protein
877	 44.41	0	1073903..1075915	+	670	34540757	-	PG1014	-	TPR domain-containing protein
878	 45.14	0	1075967..1076110	-	47	34540758	-	PG1015	-	hypothetical protein
879	 53.65	+1	1076278..1079004	+	908	34540759	ppdK	PG1017	-	pyruvate phosphate dikinase
880	 41.42	-1	1079034..1079342	+	102	34540760	-	PG1018	-	hypothetical protein
881	 48.22	0	1079355..1080536	+	393	34540761	-	PG1019	-	putative lipoprotein
882	 49.63	0	1080708..1083518	+	936	34540762	-	PG1020	-	hypothetical protein
883	 48.99	0	1083485..1083682	-	65	34540763	-	PG1021	-	hypothetical protein
884	 52.36	0	1083677..1085158	+	493	34540764	-	PG1022	-	hypothetical protein
885	 42.42	-1	1086838..1086936	+	32	34540765	-	PG1024	-	hypothetical protein
886	 44.08	0	1087281..1088369	+	362	34540766	-	PG1025	-	hypothetical protein
887	 41.80	-1	1088317..1089048	+	243	34540767	-	PG1026	-	hypothetical protein
888	 45.27	0	1089287..1089529	-	80	34540768	-	PG1027	-	hypothetical protein
48.73	MEAN

4.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.