IslandPath Analysis: Porphyromonas gingivalis W83



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.73   STD DEV: 4.83
Porphyromonas gingivalis W83, complete genome - 1..2343476
1909 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
687	 47.85	0	835842..836819	-	325	34540567	-	PG0784	-	polyprenyl synthetase
688	 50.79	0	836990..837682	-	230	34540568	-	PG0785	-	tonB protein, putative
689	 34.96	-2	837660..837782	-	40	34540569	-	PG0786	-	hypothetical protein
690	 47.74	0	837815..838057	+	80	34540570	-	PG0787	-	hypothetical protein
691	 50.30	0	838133..840766	-	877	34540571	-	PG0788	-	hypothetical protein
692	 51.74	0	840792..841508	-	238	34540572	-	PG0789	-	hypothetical protein
693	 54.68	+1	841489..842673	-	394	34540573	obgE	PG0790	-	GTPase ObgE
694	 51.45	0	842683..843267	-	194	34540574	adk	PG0791	-	adenylate kinase
695	 47.11	0	843268..843804	-	178	34540575	hpt	PG0792	-	hypoxanthine phosphoribosyltransferase
696	 48.88	0	844428..846395	+	655	34540576	fbp	PG0793	-	fructose-1,6-bisphosphatase
697	 49.09	0	846551..848911	+	786	34540577	-	PG0794	-	penicillin-binding protein 1A, putative
698	 44.44	0	848953..849663	+	236	34540578	-	PG0795	-	hypothetical protein
699	 49.28	0	849763..852540	-	925	34540579	leuS	PG0796	-	leucyl-tRNA synthetase
700	 40.86	-1	852985..853887	+	300	34540580	-	PG0798	-	ISPg3, transposase
701	 43.01	-1	854474..854659	+	61	34540581	-	PG0799	-	hypothetical protein
702	 52.05	0	854809..856368	-	519	34540582	-	PG0800	-	hypothetical protein
703	 49.24	0	856353..857804	-	483	34540583	-	PG0801	-	polyA polymerase family protein
704	 52.15	0	858463..859812	-	449	34540584	pdhD	PG0802	-	alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase
705	 48.99	0	859817..860608	-	263	34540585	nagB	PG0803	-	glucosamine-6-phosphate deaminase
706	 48.55	0	860647..861855	-	402	34540586	-	PG0804	-	flavodoxin
707	 50.35	0	861889..862740	-	283	34540587	lgt	PG0805	-	prolipoprotein diacylglyceryl transferase
708	 54.19	+1	862777..863682	-	301	34540588	-	PG0806	-	Gfo/Idh/MocA family oxidoreductase
709	 48.40	0	863720..864814	-	364	34540589	-	PG0807	-	NusB family protein
710	 49.03	0	865154..872104	-	2316	34540590	-	PG0809	-	hypothetical protein
711	 50.93	0	872067..872657	-	196	34540591	-	PG0810	-	hypothetical protein
712	 50.25	0	872691..873299	-	202	34540592	ruvA	PG0811	-	Holliday junction DNA helicase motor protein
713	 45.69	0	875994..876341	-	115	34540593	-	PG0814	-	hypothetical protein
714	 48.55	0	876370..876507	+	45	34540594	-	PG0815	-	hypothetical protein
715	 48.95	0	876476..876949	-	157	34540595	-	PG0816	-	hypothetical protein
716	 47.24	0	877466..878695	+	409	34540596	-	PG0819	-	integrase
717	 45.47	0	878721..879923	+	400	34540597	-	PG0820	-	integrase
718	 43.25	-1	879930..880292	+	120	34540598	-	PG0821	-	putative lipoprotein
719	 41.42	-1	880418..880825	-	135	34540599	-	PG0822	-	hypothetical protein
720	 40.63	-1	880958..881272	+	104	34540600	-	PG0823	-	hypothetical protein
721	 31.57	-2	881310..881990	+	226	34540601	-	PG0824	-	hypothetical protein
722	 48.16	0	882153..883238	-	361	34540602	-	PG0825	-	ISPg1, transposase
723	 40.87	-1	883361..884209	+	282	34540603	-	PG0826	-	AraC family transcriptional regulator
724	 42.68	-1	884306..885664	+	452	34540604	-	PG0827	-	MATE efflux family protein
725	 41.30	-1	886360..886836	-	158	34540605	-	PG0829	-	hypothetical protein
726	 41.96	-1	887543..887971	+	142	34540606	-	PG0831	-	hypothetical protein
727	 32.07	-2	888770..889798	-	342	34540607	-	PG0832	-	hypothetical protein
728	 32.58	-2	889798..891663	-	621	34540608	-	PG0833	-	hypothetical protein
729	 31.43	-2	892088..893350	-	420	34540609	-	PG0834	-	hypothetical protein
730	 43.48	-1	893720..893857	+	45	34540610	-	PG0835	-	hypothetical protein
731	 49.88	0	895617..896915	+	432	34540611	-	PG0838	-	integrase
732	 38.49	-2	897353..898534	+	393	34540612	-	PG0839	-	hypothetical protein
733	 38.47	-2	898512..902543	+	1343	34540613	-	PG0840	-	hypothetical protein
734	 50.56	0	902871..903764	-	297	34540614	-	PG0841	-	mobilizable transposon, excision protein, putative
735	 50.99	0	903900..904964	-	354	34540615	-	PG0842	-	mobilizable transposon protein
736	 51.60	0	904961..905272	-	103	34540616	-	PG0843	-	hypothetical protein
737	 50.54	0	905429..905521	+	30	34540617	-	PG0844	-	hypothetical protein
738	 46.68	0	907894..909474	+	526	34540618	-	PG0847	-	hypothetical protein
739	 38.64	-2	909579..910577	-	332	34540619	-	PG0848	-	hypothetical protein
740	 40.08	-1	910562..911332	-	256	34540620	-	PG0849	-	hypothetical protein
741	 44.01	0	911360..911668	-	102	34540621	-	PG0850	-	excisionase family DNA-binding protein
742	 46.62	0	911656..912822	-	388	34540622	-	PG0851	-	hypothetical protein
743	 54.73	+1	914524..915009	+	161	34540623	-	PG0853	-	histone-like family DNA-binding protein
744	 37.97	-2	915010..915828	+	272	34540624	-	PG0854	-	hypothetical protein
745	 40.62	-1	916050..916145	-	31	34540625	-	PG0855	-	hypothetical protein
746	 40.40	-1	916330..917235	+	301	34540626	-	PG0856	-	hypothetical protein
747	 49.33	0	917459..917683	+	74	34540627	-	PG0857	-	transcriptional regulator, putative
748	 43.75	-1	917680..918015	+	111	34540628	-	PG0858	-	hypothetical protein
749	 47.07	0	918005..918943	+	312	34540629	-	PG0859	-	hypothetical protein
750	 54.58	+1	919028..919333	+	101	34540630	-	PG0860	-	transcriptional regulator, putative
751	 47.98	0	919387..922869	+	1160	34540631	-	PG0861	-	Snf2/Rad54 family helicase
752	 46.25	0	922880..926278	+	1132	34540632	-	PG0862	-	type IIS restriction endonuclease, putative
753	 46.54	0	927139..927759	-	206	34540633	mpi	PG0864	-	multiple promoter invertase
754	 41.82	-1	927856..928986	-	376	34540634	-	PG0865	-	ISPg2, transposase
755	 45.20	0	929123..930268	+	381	34540635	-	PG0866	-	hypothetical protein
756	 48.13	0	930328..931023	-	231	34540636	-	PG0867	-	hypothetical protein
757	 43.83	-1	931020..931943	-	307	34540637	-	PG0868	-	mobilization protein
758	 41.81	-1	931940..932293	-	117	34540638	-	PG0869	-	mobilization protein
759	 46.08	0	932394..933452	-	352	34540639	-	PG0870	-	hypothetical protein
760	 45.82	0	933550..934926	-	458	34540640	-	PG0871	-	hypothetical protein
761	 44.17	0	934936..935295	-	119	34540641	-	PG0872	-	mobilizable transposon, Xis protein
762	 39.77	-1	936200..936898	-	232	34540642	-	PG0873	-	mobilizable transposon, tnpC protein
763	 43.21	-1	937000..938103	-	367	34540643	-	PG0874	-	mobilizable transposon, int protein
764	 41.53	-1	938192..939094	-	300	34540644	-	PG0875	-	mobilizable transposon, tnpA protein
765	 53.82	+1	939340..940896	-	518	34540645	trmE	PG0876	-	tRNA modification GTPase TrmE
766	 52.40	0	940928..941635	-	235	34540646	-	PG0877	-	hypothetical protein
767	 45.21	0	942021..942626	-	201	34540647	-	PG0879	-	hypothetical protein
768	 48.21	0	942679..943182	+	167	34540648	bcp	PG0880	-	bacterioferritin comigratory protein
769	 50.73	0	943203..944225	+	340	34540649	recA	PG0881	-	recombinase A
770	 51.94	0	944335..945264	+	309	34540650	-	PG0882	-	hypothetical protein
771	 49.93	0	945261..946622	+	453	34540651	-	PG0883	-	hypothetical protein
772	 49.72	0	946619..947869	+	416	34540652	-	PG0884	-	hypothetical protein
773	 50.68	0	947885..948985	+	366	34540653	-	PG0885	-	phospho-2-dehydro-3-deoxyheptonate aldolase/chorismate mutase
774	 47.45	0	948982..949746	+	254	34540654	-	PG0886	-	hypothetical protein
775	 38.64	-2	950050..950181	+	43	34540655	-	PG0888	-	hypothetical protein
776	 48.04	0	950240..951436	+	398	34540656	-	PG0889	-	M24 family peptidase
777	 47.99	0	951472..953163	+	563	34540657	-	PG0890	-	alkaline phosphatase, putative
778	 49.06	0	954291..955931	-	546	161579530	-	PG0893	-	hydroxylamine reductase
779	 53.07	0	956168..956851	-	227	34540659	radC	PG0894	-	DNA repair protein RadC
780	 50.79	0	957389..960442	+	1017	34540660	lacZ-2	PG0896	-	beta-galactosidase
781	 50.53	0	960958..962562	-	534	34540661	-	PG0897	-	alpha-amylase family protein
782	 48.74	0	962649..963440	-	263	34540662	-	PG0898	-	hypothetical protein
783	 47.42	0	963587..964750	-	387	34540663	cydB	PG0899	-	cytochrome d ubiquinol oxidase, subunit II
784	 50.57	0	964796..966379	-	527	34540664	cydA	PG0900	-	cytochrome d ubiquinol oxidase, subunit I
785	 42.17	-1	966405..966653	-	82	34540665	-	PG0901	-	hypothetical protein
786	 51.48	0	966836..969061	-	741	34540666	-	PG0902	-	alpha-1,2-mannosidase family protein
48.73	MEAN

4.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.