IslandPathversion 1.0

IslandPath Analysis: Porphyromonas gingivalis W83



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.73 STD DEV: 4.83
Porphyromonas gingivalis W83, complete genome - 1..2343476
1909 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
648	 50.18	0	786328..786606	+	92	34540528	-	PG0737	-	hypothetical protein
649	 56.73	+1	786603..787055	+	150	34540529	-	PG0738	-	cytidine/deoxycytidylate deaminase family protein
650	 52.57	0	787087..788001	+	304	34540530	-	PG0739	-	ribonuclease Z
651	 50.00	0	787976..788545	+	189	34540531	-	PG0740	-	NLP/P60 family protein
652	 42.17	-1	788807..789406	-	199	34540532	-	PG0741	-	hypothetical protein
653	 44.62	0	789390..790727	-	445	34540533	pgaA	PG0742	-	antigen PgaA
654	 55.42	+1	791223..791987	-	254	34540534	-	PG0744	-	RNA methyltransferase
655	 51.88	0	792072..792470	-	132	34540535	-	PG0745	-	lactoylglutathione lyase, putative
656	 52.27	0	792626..793993	-	455	34540536	-	PG0746	-	sensor histidine kinase
657	 54.19	+1	793990..795384	-	464	34540537	-	PG0747	-	sigma-54 dependent DNA-binding response regulator
658	 47.86	0	795628..795744	-	38	34540538	-	PG0749	-	hypothetical protein
659	 45.38	0	796036..796782	-	248	34540539	-	PG0750	-	glycosyl transferase, group 2 family protein
660	 47.07	0	796934..797668	-	244	34540540	porT	PG0751	-	porT protein
661	 49.16	0	797807..798457	+	216	34540541	upp	PG0752	-	uracil phosphoribosyltransferase
662	 53.41	0	798441..800348	+	635	34540542	prtQ	PG0753	-	protease
663	 50.78	0	801083..803449	+	788	34540543	topA	PG0754	-	DNA topoisomerase I
664	 48.63	0	804411..805763	-	450	34540544	-	PG0756	-	hypothetical protein
665	 51.08	0	805813..806460	-	215	34540545	-	PG0757	-	hypothetical protein
666	 52.11	0	806557..808644	-	695	34540546	dcp-1	PG0758	-	peptidyl-dipeptidase Dcp
667	 54.41	+1	808722..810875	-	717	34540547	-	PG0759	-	TPR domain-containing protein
668	 49.24	0	812899..814275	+	458	34540548	-	PG0762	-	trigger factor, putative
669	 54.08	+1	816264..818495	-	743	34540549	pnpA	PG0766	-	polynucleotide phosphorylase/polyadenylase
670	 52.00	0	818647..820623	-	658	34540550	malQ	PG0767	-	4-alpha-glucanotransferase
671	 52.57	0	821365..822471	-	368	34540551	-	PG0768	-	hypothetical protein
672	 47.94	0	822645..824267	-	540	34540552	-	PG0769	-	fibronectin type III domain-containing protein
673	 49.16	0	824249..824665	-	138	34540553	-	PG0770	-	hypothetical protein
674	 46.59	0	824664..824927	+	87	34540554	-	PG0771	-	hypothetical protein
675	 42.00	-1	825115..825264	+	49	34540555	-	PG0772	-	hypothetical protein
676	 36.96	-2	825271..825408	+	45	34540556	-	PG0773	-	hypothetical protein
677	 43.69	-1	825787..827031	-	414	34540557	-	PG0774	-	hypothetical protein
678	 51.39	0	827522..829243	-	573	34540558	-	PG0775	-	acyl-CoA dehydrogenase family protein
679	 46.96	0	829255..830274	-	339	34540559	etfA-1	PG0776	-	electron transfer flavoprotein, alpha subunit
680	 50.17	0	830283..831149	-	288	34540560	etfB-1	PG0777	-	electron transfer flavoprotein, beta subunit
681	 45.83	0	831240..831959	-	239	34540561	-	PG0778	-	hypothetical protein
682	 42.62	-1	832190..832663	-	157	34540562	-	PG0779	-	hypothetical protein
683	 42.28	-1	832679..833293	-	204	34540563	-	PG0780	-	hypothetical protein
684	 46.28	0	833329..833799	-	156	34540564	-	PG0781	-	hypothetical protein
685	 46.25	0	833808..834620	-	270	34540565	-	PG0782	-	MotA/TolQ/ExbB proton channel family protein
686	 46.01	0	834968..835795	-	275	34540566	-	PG0783	-	hydrolase, putative
687	 47.85	0	835842..836819	-	325	34540567	-	PG0784	-	polyprenyl synthetase
688	 50.79	0	836990..837682	-	230	34540568	-	PG0785	-	tonB protein, putative
689	 34.96	-2	837660..837782	-	40	34540569	-	PG0786	-	hypothetical protein
690	 47.74	0	837815..838057	+	80	34540570	-	PG0787	-	hypothetical protein
691	 50.30	0	838133..840766	-	877	34540571	-	PG0788	-	hypothetical protein
692	 51.74	0	840792..841508	-	238	34540572	-	PG0789	-	hypothetical protein
693	 54.68	+1	841489..842673	-	394	34540573	obgE	PG0790	-	GTPase ObgE
694	 51.45	0	842683..843267	-	194	34540574	adk	PG0791	-	adenylate kinase
695	 47.11	0	843268..843804	-	178	34540575	hpt	PG0792	-	hypoxanthine phosphoribosyltransferase
696	 48.88	0	844428..846395	+	655	34540576	fbp	PG0793	-	fructose-1,6-bisphosphatase
697	 49.09	0	846551..848911	+	786	34540577	-	PG0794	-	penicillin-binding protein 1A, putative
698	 44.44	0	848953..849663	+	236	34540578	-	PG0795	-	hypothetical protein
699	 49.28	0	849763..852540	-	925	34540579	leuS	PG0796	-	leucyl-tRNA synthetase
700	 40.86	-1	852985..853887	+	300	34540580	-	PG0798	-	ISPg3, transposase
701	 43.01	-1	854474..854659	+	61	34540581	-	PG0799	-	hypothetical protein
702	 52.05	0	854809..856368	-	519	34540582	-	PG0800	-	hypothetical protein
703	 49.24	0	856353..857804	-	483	34540583	-	PG0801	-	polyA polymerase family protein
704	 52.15	0	858463..859812	-	449	34540584	pdhD	PG0802	-	alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase
705	 48.99	0	859817..860608	-	263	34540585	nagB	PG0803	-	glucosamine-6-phosphate deaminase
706	 48.55	0	860647..861855	-	402	34540586	-	PG0804	-	flavodoxin
707	 50.35	0	861889..862740	-	283	34540587	lgt	PG0805	-	prolipoprotein diacylglyceryl transferase
708	 54.19	+1	862777..863682	-	301	34540588	-	PG0806	-	Gfo/Idh/MocA family oxidoreductase
709	 48.40	0	863720..864814	-	364	34540589	-	PG0807	-	NusB family protein
710	 49.03	0	865154..872104	-	2316	34540590	-	PG0809	-	hypothetical protein
711	 50.93	0	872067..872657	-	196	34540591	-	PG0810	-	hypothetical protein
712	 50.25	0	872691..873299	-	202	34540592	ruvA	PG0811	-	Holliday junction DNA helicase motor protein
713	 45.69	0	875994..876341	-	115	34540593	-	PG0814	-	hypothetical protein
714	 48.55	0	876370..876507	+	45	34540594	-	PG0815	-	hypothetical protein
715	 48.95	0	876476..876949	-	157	34540595	-	PG0816	-	hypothetical protein
716	 47.24	0	877466..878695	+	409	34540596	-	PG0819	-	integrase
717	 45.47	0	878721..879923	+	400	34540597	-	PG0820	-	integrase
718	 43.25	-1	879930..880292	+	120	34540598	-	PG0821	-	putative lipoprotein
719	 41.42	-1	880418..880825	-	135	34540599	-	PG0822	-	hypothetical protein
720	 40.63	-1	880958..881272	+	104	34540600	-	PG0823	-	hypothetical protein
721	 31.57	-2	881310..881990	+	226	34540601	-	PG0824	-	hypothetical protein
722	 48.16	0	882153..883238	-	361	34540602	-	PG0825	-	ISPg1, transposase
723	 40.87	-1	883361..884209	+	282	34540603	-	PG0826	-	AraC family transcriptional regulator
724	 42.68	-1	884306..885664	+	452	34540604	-	PG0827	-	MATE efflux family protein
725	 41.30	-1	886360..886836	-	158	34540605	-	PG0829	-	hypothetical protein
726	 41.96	-1	887543..887971	+	142	34540606	-	PG0831	-	hypothetical protein
727	 32.07	-2	888770..889798	-	342	34540607	-	PG0832	-	hypothetical protein
728	 32.58	-2	889798..891663	-	621	34540608	-	PG0833	-	hypothetical protein
729	 31.43	-2	892088..893350	-	420	34540609	-	PG0834	-	hypothetical protein
730	 43.48	-1	893720..893857	+	45	34540610	-	PG0835	-	hypothetical protein
731	 49.88	0	895617..896915	+	432	34540611	-	PG0838	-	integrase
732	 38.49	-2	897353..898534	+	393	34540612	-	PG0839	-	hypothetical protein
733	 38.47	-2	898512..902543	+	1343	34540613	-	PG0840	-	hypothetical protein
734	 50.56	0	902871..903764	-	297	34540614	-	PG0841	-	mobilizable transposon, excision protein, putative
735	 50.99	0	903900..904964	-	354	34540615	-	PG0842	-	mobilizable transposon protein
736	 51.60	0	904961..905272	-	103	34540616	-	PG0843	-	hypothetical protein
737	 50.54	0	905429..905521	+	30	34540617	-	PG0844	-	hypothetical protein
738	 46.68	0	907894..909474	+	526	34540618	-	PG0847	-	hypothetical protein
739	 38.64	-2	909579..910577	-	332	34540619	-	PG0848	-	hypothetical protein
740	 40.08	-1	910562..911332	-	256	34540620	-	PG0849	-	hypothetical protein
741	 44.01	0	911360..911668	-	102	34540621	-	PG0850	-	excisionase family DNA-binding protein
742	 46.62	0	911656..912822	-	388	34540622	-	PG0851	-	hypothetical protein
743	 54.73	+1	914524..915009	+	161	34540623	-	PG0853	-	histone-like family DNA-binding protein
744	 37.97	-2	915010..915828	+	272	34540624	-	PG0854	-	hypothetical protein
745	 40.62	-1	916050..916145	-	31	34540625	-	PG0855	-	hypothetical protein
746	 40.40	-1	916330..917235	+	301	34540626	-	PG0856	-	hypothetical protein
747	 49.33	0	917459..917683	+	74	34540627	-	PG0857	-	transcriptional regulator, putative
48.73	MEAN

4.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.