IslandPath Analysis: Porphyromonas gingivalis W83



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.73   STD DEV: 4.83
Porphyromonas gingivalis W83, complete genome - 1..2343476
1909 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 50.84	0	1..1422	+	473	34539881	dnaA	PG0001	-	chromosomal replication initiation protein
2	 52.36	0	1435..2007	+	190	34539882	-	PG0002	-	hexapeptide transferase family protein
3	 49.90	0	2009..3028	-	339	34539883	-	PG0003	-	hypothetical protein
4	 52.34	0	3108..3812	+	234	34539884	-	PG0004	-	NAD-dependent deacetylase
5	 51.69	0	3887..5041	-	384	34539885	-	PG0005	-	hypothetical protein
6	 51.84	0	5094..6422	-	442	34539886	-	PG0006	-	MATE efflux family protein
7	 48.43	0	6845..7003	-	52	34539887	-	PG0007	-	hypothetical protein
8	 49.73	0	7175..8113	-	312	34539888	-	PG0008	-	ISPg5 transposase Orf2
9	 45.38	0	8167..8556	-	129	34539889	-	PG0009	-	ISPg5 transposase Orf1
10	 55.08	+1	8915..11494	+	859	34539890	clpC	PG0010	-	ATP-dependent Clp protease, ATP-binding subunit ClpC
11	 53.22	0	11634..14645	+	1003	34539891	-	PG0011	-	glycosy hydrolase family protein
12	 49.27	0	14693..15721	+	342	34539892	-	PG0012	-	L-threonine-O-3-phosphate decarboxylase, putative
13	 52.53	0	15731..16501	+	256	34539893	-	PG0013	-	hypothetical protein
14	 53.04	0	17087..18436	+	449	34539894	-	PG0016	-	sigma-54 dependent DNA-binding response regulator
15	 50.45	0	18447..19784	+	445	34539895	-	PG0017	-	sensor histidine kinase
16	 49.35	0	19788..22034	+	748	34539896	-	PG0018	-	hypothetical protein
17	 45.51	0	22180..23337	+	385	34539897	-	PG0019	-	ISPg4 transposase
18	 50.35	0	23522..24226	+	234	34539898	-	PG0020	-	MarR family transcriptional regulator
19	 52.99	0	24212..25213	-	333	34539899	-	PG0021	-	NifR3 family TIM-barrel protein
20	 52.24	0	25210..26886	-	558	34539900	-	PG0022	-	sulfate permease family protein
21	 53.88	+1	27872..28528	+	218	34539901	-	PG0024	-	redox-sensing transcriptional repressor Rex
22	 53.64	+1	28597..29256	+	219	34539902	-	PG0025	-	fumarylacetoacetate hydrolase family protein
23	 51.13	0	29374..32745	+	1123	34539903	-	PG0026	-	hypothetical protein
24	 47.45	0	32821..33996	+	391	34539904	-	PG0027	-	hypothetical protein
25	 50.31	0	34003..34491	+	162	34539905	ispF	PG0028	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
26	 56.18	+1	35986..36462	+	158	34539906	-	PG0030	-	cytidine deaminase
27	 49.78	0	36995..37669	-	224	34539907	-	PG0031	-	hypothetical protein
28	 54.02	+1	37717..40302	-	861	34539908	-	PG0032	-	beta-mannosidase, putative
29	 53.43	0	40332..41630	-	432	34539909	-	PG0033	-	RmuC domain-containing protein
30	 48.25	0	42325..42639	-	104	34539910	trx	PG0034	-	thioredoxin
31	 49.28	0	42688..46374	-	1228	34539911	dnaE	PG0035	-	DNA polymerase III, alpha subunit
32	 44.81	0	46659..47024	+	121	34539912	rplS	PG0037	-	50S ribosomal protein L19
33	 42.50	-1	47777..47896	+	39	34539913	-	PG0039	-	hypothetical protein
34	 45.13	0	48074..48463	+	129	34539914	-	PG0040	-	ISPg5 transposase Orf1
35	 50.27	0	48517..49455	+	312	34539915	-	PG0041	-	ISPg5 transposase Orf2
36	 52.54	0	49769..51049	+	426	34539916	glyA	PG0042	-	serine hydroxymethyltransferase
37	 50.81	0	51206..53539	+	777	34539917	nahA	PG0043	-	beta-hexosaminidase
38	 51.82	0	54199..56253	+	684	34539918	htpG	PG0045	-	heat shock protein 90
39	 51.11	0	56436..57290	-	284	34539919	cdsA	PG0046	-	phosphatidate cytidylyltransferase
40	 51.83	0	57319..59340	-	673	34539920	-	PG0047	-	cell division protein FtsH, putative
41	 49.73	0	59544..60647	-	367	34539921	-	PG0048	-	translation-associated GTPase
42	 42.42	-1	60666..60830	-	54	34539922	-	PG0049	-	hypothetical protein
43	 45.34	0	61056..62213	+	385	34539923	-	PG0050	-	ISPg4, transposase
44	 49.83	0	63559..64746	+	395	34539924	-	PG0052	-	sensor histidine kinase
45	 46.67	0	65057..65176	-	39	34539925	-	PG0053	-	hypothetical protein
46	 49.74	0	65205..66959	+	584	34539926	recJ	PG0054	-	single-stranded-DNA-specific exonuclease RecJ
47	 48.20	0	66956..68011	+	351	34539927	-	PG0055	-	hypothetical protein
48	 42.15	-1	68142..69842	+	566	34539928	-	PG0056	-	hypothetical protein
49	 48.27	0	69875..71059	+	394	34539929	pncB	PG0057	-	nicotinate phosphoribosyltransferase
50	 50.00	0	71059..71652	+	197	34539930	nadD	PG0058	-	nicotinic acid mononucleotide adenylyltransferase
51	 51.56	0	71666..72049	+	127	34539931	-	PG0059	-	hypothetical protein
52	 45.36	0	72056..72238	+	60	34539932	-	PG0060	-	hypothetical protein
53	 51.85	0	72285..73823	+	512	34539933	yngK-1	PG0061	-	yngK protein
54	 53.01	0	73828..75870	+	680	34539934	-	PG0062	-	TPR domain-containing protein
55	 52.33	0	75968..77146	-	392	34539935	-	PG0063	-	outer membrane efflux protein
56	 52.98	0	77164..80283	-	1039	34539936	-	PG0064	-	CzcA family heavy metal efflux protein
57	 53.23	0	80303..81277	-	324	34539937	-	PG0065	-	RND family efflux transporter MFP subunit
58	 45.14	0	81354..81641	-	95	34539938	-	PG0066	-	hypothetical protein
59	 51.59	0	81888..82139	+	83	34539939	-	PG0068	-	hypothetical protein
60	 53.86	+1	82511..84025	-	504	34539940	-	PG0069	-	hypothetical protein
61	 49.69	0	84030..84824	-	264	34539941	lpxA	PG0070	-	UDP-N-acetylglucosamine acyltransferase
62	 49.60	0	84821..86209	-	462	34539942	-	PG0071	-	bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase
63	 51.33	0	86188..87237	-	349	34539943	lpxD	PG0072	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
64	 50.30	0	87330..88160	-	276	34539944	-	PG0073	-	orotidine 5'-monophosphate decarboxylase
65	 54.70	+1	88177..89262	-	361	34539945	prfA	PG0074	-	peptide chain release factor 1
66	 54.19	+1	89287..90528	-	413	34539946	-	PG0075	-	phosphoribosylformylglycinamidine cyclo-ligase, putative
67	 52.02	0	90482..91423	-	313	34539947	-	PG0076	-	N-acetylmuramoyl-L-alanine amidase
68	 39.77	-1	91656..92354	-	232	34539948	-	PG0078	-	hypothetical protein
69	 40.78	-1	92327..93628	-	433	34539949	-	PG0079	-	abortive infection protein, putative
70	 42.42	-1	93659..93922	-	87	34539950	-	PG0080	-	hypothetical protein
71	 53.95	+1	93945..96122	+	725	34539951	-	PG0081	-	hypothetical protein
72	 51.50	0	96184..97086	+	300	34539952	-	PG0082	-	hypothetical protein
73	 52.80	0	97092..97877	+	261	34539953	-	PG0083	-	hypothetical protein
74	 55.67	+1	97972..99171	+	399	34539954	sda	PG0084	-	L-serine dehydratase, iron-sulfur-dependent, single chain form
75	 52.49	0	99312..100616	+	434	34539955	-	PG0085	-	alpha-galactosidase
76	 50.30	0	100635..102449	-	604	34539956	-	PG0086	-	DEAD-box ATP dependent DNA helicase
77	 54.11	+1	102595..103215	-	206	34539957	-	PG0087	-	SIS domain-containing protein
78	 50.66	0	103415..104632	+	405	34539958	-	PG0088	-	M16 family peptidase
79	 51.67	0	105664..106143	+	159	34539959	-	PG0090	-	Dps family protein
80	 52.55	0	106273..107490	-	405	34539960	-	PG0091	-	transporter, putative
81	 52.98	0	107549..108688	-	379	34539961	-	PG0092	-	transporter, putative
82	 56.33	+1	108733..109728	-	331	34539962	-	PG0093	-	HlyD family secretion protein
83	 55.11	+1	109778..111283	-	501	34539963	-	PG0094	-	outer membrane efflux protein, putative
84	 53.25	0	112178..114853	-	891	34539964	mutS	PG0095	-	DNA mismatch repair protein
85	 50.21	0	115146..115874	-	242	161579534	-	PG0097	-	hypothetical protein
86	 38.38	-2	115835..115933	-	32	34539966	-	PG0098	-	hypothetical protein
87	 52.64	0	115917..118376	-	819	34539967	pheT	PG0099	-	phenylalanyl-tRNA synthetase subunit beta
88	 45.24	0	119142..119309	-	55	34539968	-	PG0100	-	hypothetical protein
89	 44.29	0	119338..119556	+	72	34539969	-	PG0101	-	hypothetical protein
90	 44.65	0	121143..121301	+	52	34539970	-	PG0102	-	hypothetical protein
91	 44.23	0	121430..121585	+	51	34539971	-	PG0103	-	hypothetical protein
92	 52.51	0	125481..127508	+	675	34539972	topB-1	PG0104	-	DNA topoisomerase III
93	 37.03	-2	128858..129994	+	378	34539973	-	PG0106	-	glycosyl transferase, group 4 family protein
94	 44.17	0	130241..131449	+	402	34539974	epsD	PG0108	-	UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase
95	 38.24	-2	131471..132694	+	407	34539975	-	PG0109	-	hypothetical protein
96	 39.96	-1	132731..133771	+	346	34539976	-	PG0110	-	glycosyl transferase, group 1 family protein
97	 37.75	-2	133820..135088	+	422	34539977	-	PG0111	-	capsular polysacharride biosynthesis gene, putative
98	 42.42	-1	136065..136922	+	285	34539978	-	PG0113	-	hypothetical protein
99	 47.89	0	136919..138058	+	379	34539979	-	PG0114	-	hypothetical protein
100	 39.04	-2	138178..138615	+	145	34539980	-	PG0115	-	hexapeptide transferase family protein
48.73	MEAN

4.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.