IslandPath Analysis: Porphyromonas gingivalis W83



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.73   STD DEV: 4.83
Porphyromonas gingivalis W83, complete genome - 1..2343476
1909 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
237	 46.67	0	307045..307554	-	169	34540117	-	PG0275	-	thioredoxin family protein
238	 47.81	0	307692..308879	-	395	34540118	-	PG0276	-	hypothetical protein
239	 41.82	-1	308996..310126	+	376	34540119	-	PG0277	-	ISPg2, transposase
240	 51.00	0	310187..310537	+	116	34540120	-	PG0278	-	hypothetical protein
241	 53.38	0	310765..313044	-	759	34540121	maeB	PG0279	-	malic enzyme
242	 51.54	0	313387..314715	-	442	34540122	-	PG0280	-	ABC transporter, permease protein, putative
243	 53.96	+1	314737..316113	-	458	34540123	-	PG0281	-	ABC transporter, permease protein, putative
244	 55.36	+1	316334..317005	-	223	34540124	-	PG0282	-	ABC transporter, ATP-binding protein
245	 56.27	+1	317085..318335	-	416	34540125	-	PG0283	-	RND family efflux transporter MFP subunit
246	 57.04	+1	318599..320104	+	501	34540126	-	PG0285	-	hypothetical protein
247	 40.70	-1	320257..320514	+	85	34540127	-	PG0286	-	hypothetical protein
248	 50.85	0	320597..321538	+	313	34540128	-	PG0287	-	hypothetical protein
249	 50.47	0	321595..323070	+	491	34540129	-	PG0288	-	putative lipoprotein
250	 50.05	0	323000..324040	+	346	34540130	-	PG0289	-	hypothetical protein
251	 48.61	0	324044..325594	+	516	34540131	-	PG0290	-	hypothetical protein
252	 49.36	0	325597..326682	+	361	34540132	-	PG0291	-	hypothetical protein
253	 44.73	0	328183..328761	-	192	34540133	-	PG0293	-	secretion activator protein, putative
254	 52.41	0	329361..330251	-	296	34540134	-	PG0294	-	glycosyl transferase, group 2 family protein
255	 54.67	+1	330266..331390	-	374	34540135	dprA	PG0295	-	DNA processing protein DprA, putative
256	 53.14	0	331383..335087	-	1234	34540136	-	PG0296	-	phosphoribosylformylglycinamidine synthase
257	 48.20	0	335387..335608	-	73	34540137	-	PG0297	-	hypothetical protein
258	 53.75	+1	336710..338002	+	430	34540138	-	PG0300	-	TPR domain-containing protein
259	 47.99	0	338359..338781	+	140	34540139	-	PG0302	-	hypothetical protein
260	 56.13	+1	338791..339663	+	290	34540140	-	PG0303	-	ferredoxin
261	 52.55	0	339699..341030	+	443	34540141	-	PG0304	-	electron transport complex, RnfABCDGE type, C subunit
262	 50.51	0	341046..342029	+	327	34540142	-	PG0305	-	electron transport complex, RnfABCDGE type, D subunit
263	 49.54	0	342056..342703	+	215	34540143	-	PG0306	-	electron transport complex, RnfABCDGE type, G subunit
264	 46.02	0	342700..343290	+	196	34540144	-	PG0307	-	SoxR-reducing system protein RsxE
265	 47.47	0	343315..343887	+	190	34540145	-	PG0308	-	electron transport complex, RnfABCDGE type, A subunit
266	 51.68	0	344100..345113	-	337	34540146	apbE	PG0309	-	thiamine biosynthesis lipoprotein ApbE
267	 50.37	0	345110..345649	-	179	34540147	-	PG0310	-	nitroreductase family protein
268	 49.79	0	345649..346602	-	317	34540148	-	PG0311	-	glycosyl transferase, group 2 family protein
269	 48.15	0	346599..347138	-	179	34540149	-	PG0312	-	hypothetical protein
270	 38.51	-2	347506..347814	+	102	34540150	-	PG0313	-	hypothetical protein
271	 46.86	0	347875..348192	+	105	161579533	rplU	PG0314	-	50S ribosomal protein L21
272	 46.51	0	348220..348477	+	85	34540152	rpmA	PG0315	-	50S ribosomal protein L27
273	 54.56	+1	348577..349848	+	423	34540153	serS	PG0316	-	seryl-tRNA synthetase
274	 54.42	+1	349861..352521	-	886	34540154	-	PG0317	-	M49 family peptidase
275	 46.39	0	353089..353517	+	142	34540155	-	PG0319	-	hypothetical protein
276	 54.91	+1	353549..354637	+	362	34540156	-	PG0320	-	hypothetical protein
277	 54.36	+1	354788..355819	+	343	34540157	-	PG0321	-	arginine/ornithine transport system ATPase
278	 51.06	0	355848..357026	+	392	34540158	-	PG0322	-	serine/threonine transporter
279	 50.91	0	357149..357478	-	109	34540159	-	PG0323	-	hypothetical protein
280	 54.75	+1	357679..359172	-	497	34540160	hutH	PG0324	-	histidine ammonia-lyase
281	 52.54	0	359175..359804	-	209	34540161	-	PG0325	-	hypothetical protein
282	 54.94	+1	359829..361064	-	411	34540162	-	PG0326	-	hypothetical protein
283	 57.32	+1	360997..362151	-	384	34540163	-	PG0327	-	hypothetical protein
284	 60.30	+2	362245..363516	-	423	34540164	hutI	PG0328	-	imidazolonepropionase
285	 58.58	+2	363617..364519	-	300	34540165	-	PG0329	-	formiminotransferase-cyclodeaminase-related protein
286	 60.08	+2	364568..365083	-	171	34540166	-	PG0330	-	histone-like family DNA-binding protein
287	 60.39	+2	365759..367735	+	658	34540167	rho	PG0332	-	transcription termination factor Rho
288	 57.32	+1	367963..368871	+	302	34540168	-	PG0333	-	hypothetical protein
289	 53.44	0	368882..369841	-	319	34540169	-	PG0334	-	glycosyl transferase, group 2 family protein
290	 55.48	+1	369894..370796	-	300	34540170	miaA	PG0335	-	tRNA delta(2)-isopentenylpyrophosphate transferase
291	 51.75	0	370813..371382	-	189	34540171	-	PG0336	-	hypothetical protein
292	 44.44	0	371467..371619	-	50	34540172	-	PG0337	-	hypothetical protein
293	 52.07	0	371670..375197	+	1175	34540173	-	PG0338	-	hypothetical protein
294	 48.72	0	375202..375747	+	181	34540174	-	PG0339	-	hypothetical protein
295	 48.11	0	376206..376496	+	96	34540175	-	PG0340	-	hypothetical protein
296	 58.38	+1	377271..378452	-	393	34540176	megL	PG0343	-	methionine gamma-lyase
297	 57.28	+1	378633..380102	-	489	34540177	-	PG0344	-	purple acid phosphatase
298	 53.03	0	380105..380698	-	197	34540178	-	PG0345	-	hypothetical protein
299	 48.18	0	380799..381404	+	201	34540179	-	PG0346	-	GTPase EngB
300	 53.26	0	381414..382442	+	342	34540180	galE	PG0347	-	UDP-glucose 4-epimerase
301	 54.12	+1	382485..384581	+	698	34540181	recG	PG0348	-	ATP-dependent DNA helicase RecG
302	 53.52	0	384599..385351	+	250	34540182	-	PG0349	-	HAD superfamily hydrolase
303	 49.28	0	385446..386900	-	484	34540183	-	PG0350	-	internalin-related protein
304	 42.53	-1	386914..387174	+	86	34540184	-	PG0351	-	hypothetical protein
305	 54.71	+1	387327..388907	+	526	34540185	-	PG0352	-	sialidase, putative
306	 49.67	0	389221..389373	-	50	34540186	-	PG0354	-	hypothetical protein
307	 48.48	0	389784..390767	+	327	34540187	-	PG0355	-	hypothetical protein
308	 48.28	0	390751..391533	+	260	34540188	-	PG0356	-	hypothetical protein
309	 50.49	0	391580..392494	+	304	34540189	pyrB	PG0357	-	aspartate carbamoyltransferase catalytic subunit
310	 50.00	0	392507..392962	+	151	34540190	pyrI	PG0358	-	aspartate carbamoyltransferase regulatory subunit
311	 53.40	0	392991..393578	+	195	34540191	-	PG0359	-	flavin reductase domain-containing protein
312	 48.56	0	393622..394212	+	196	34540192	-	PG0360	-	hypothetical protein
313	 52.37	0	394234..395541	+	435	34540193	-	PG0361	-	hypothetical protein
314	 49.79	0	395441..397609	+	722	34540194	-	PG0362	-	hypothetical protein
315	 51.81	0	397610..398437	+	275	34540195	-	PG0363	-	hypothetical protein
316	 52.65	0	398500..399705	-	401	34540196	-	PG0364	-	hypothetical protein
317	 57.14	+1	399702..400268	-	188	34540197	-	PG0365	-	3'-5' exonuclease domain-containing protein
318	 52.76	0	400345..400905	-	186	34540198	-	PG0366	-	hypothetical protein
319	 51.73	0	401385..403319	+	644	34540199	-	PG0368	-	DNA topoisomerase IV subunit B
320	 53.90	+1	403350..403811	+	153	34540200	coaD	PG0369	-	phosphopantetheine adenylyltransferase
321	 43.14	-1	404183..404284	+	33	34540201	-	PG0371	-	hypothetical protein
322	 39.91	-1	404845..405513	+	222	34540202	-	PG0373	-	hypothetical protein
323	 48.72	0	405538..405654	-	38	34540203	-	PG0374	-	hypothetical protein
324	 49.56	0	406074..406529	+	151	34540204	rplM	PG0375	-	50S ribosomal protein L13
325	 50.13	0	406539..406925	+	128	34540205	rpsI	PG0376	-	30S ribosomal protein S9
326	 51.89	0	407060..407905	+	281	34540206	rpsB	PG0377	-	30S ribosomal protein S2
327	 52.12	0	408044..408868	+	274	34540207	tsf	PG0378	-	elongation factor Ts
328	 55.13	+1	409242..411278	+	678	34540208	uvrB	PG0380	-	excinuclease ABC subunit B
329	 50.89	0	411275..412795	-	506	34540209	-	PG0381	-	potassium/proton antiporter
330	 32.93	-2	413331..414803	+	490	34540210	-	PG0382	-	hypothetical protein
331	 52.27	0	414906..416225	+	439	34540211	-	PG0383	-	membrane-associated zinc metalloprotease, putative
332	 52.04	0	416235..418757	+	840	34540212	-	PG0384	-	MutS2 family protein
333	 46.35	0	418919..419110	+	63	34540213	rpsU	PG0385	-	30S ribosomal protein S21
334	 46.55	0	419187..420389	+	400	34540214	-	PG0386	-	phage integrase family site specific recombinase
335	 49.24	0	420783..421970	+	395	34540215	tuf	PG0387	-	elongation factor Tu
336	 45.74	0	422354..422893	+	179	34540216	nusG	PG0389	-	transcription antitermination protein NusG
48.73	MEAN

4.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.