IslandPath Analysis: Porphyromonas gingivalis W83



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.73   STD DEV: 4.83
Porphyromonas gingivalis W83, complete genome - 1..2343476
1909 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1558	 49.51	0	1913118..1913834	-	238	34541438	-	PG1818	-	hypothetical protein
1559	 50.08	0	1913786..1914412	-	208	34541439	-	PG1819	-	hypothetical protein
1560	 48.96	0	1914483..1915979	-	498	34541440	nrfA	PG1820	-	cytochrome c nitrite reductase
1561	 47.22	0	1916001..1916612	-	203	34541441	nrfH	PG1821	-	cytochrome c nitrite reductase, small subunit NrfH
1562	 44.04	0	1917457..1918110	+	217	34541442	-	PG1823	-	hypothetical protein
1563	 51.80	0	1918243..1919520	-	425	34541443	eno	PG1824	-	phosphopyruvate hydratase
1564	 44.44	0	1919600..1919761	-	53	34541444	-	PG1825	-	hypothetical protein
1565	 49.52	0	1919736..1920155	-	139	34541445	-	PG1826	-	hypothetical protein
1566	 44.70	0	1920154..1920795	+	213	34541446	-	PG1827	-	ECF subfamily RNA polymerase sigma factor
1567	 45.54	0	1921014..1921226	-	70	34541447	-	PG1828	-	putative lipoprotein
1568	 49.88	0	1921397..1923070	-	557	34541448	-	PG1829	-	long-chain-fatty-acid--CoA ligase, putative
1569	 53.81	+1	1923545..1925512	-	655	34541449	recQ-2	PG1831	-	ATP-dependent DNA helicase RecQ
1570	 50.12	0	1926295..1927110	+	271	34541450	-	PG1834	-	glycogen synthase-related protein
1571	 48.68	0	1927213..1928580	+	455	34541451	-	PG1835	-	putative lipoprotein
1572	 48.46	0	1928683..1929918	+	411	34541452	nupG	PG1836	-	nucleoside permease NupG
1573	 49.78	0	1930477..1936794	+	2105	34541453	-	PG1837	-	hemagglutinin protein HagA
1574	 48.25	0	1937242..1937355	+	37	34541454	-	PG1840	-	hypothetical protein
1575	 48.48	0	1937450..1938373	+	307	34541455	-	PG1841	-	hypothetical protein
1576	 48.34	0	1938381..1939373	+	330	34541456	-	PG1842	-	acetyltransferase
1577	 50.72	0	1946177..1946314	+	45	34541457	-	PG1846	-	hypothetical protein
1578	 47.24	0	1946317..1946697	-	126	34541458	-	PG1847	-	endoribonuclease L-PSP, putative
1579	 51.73	0	1946723..1947472	-	249	34541459	-	PG1848	-	RNA methyltransferase
1580	 50.54	0	1947469..1949124	-	551	34541460	recN	PG1849	-	DNA repair protein RecN
1581	 47.19	0	1949139..1950047	-	302	34541461	-	PG1850	-	hypothetical protein
1582	 52.35	0	1950044..1951258	-	404	34541462	coaBC	PG1851	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1583	 49.36	0	1951284..1952063	-	259	34541463	-	PG1852	-	exonuclease
1584	 49.91	0	1952076..1953209	-	377	34541464	dnaN	PG1853	-	DNA polymerase III, beta subunit
1585	 52.87	0	1953415..1953972	-	185	34541465	-	PG1854	-	5-formyltetrahydrofolate cyclo-ligase family protein
1586	 50.21	0	1953932..1955566	-	544	34541466	-	PG1855	-	carboxyl-terminal protease
1587	 49.34	0	1955574..1956029	-	151	34541467	-	PG1856	-	cytidine/deoxycytidylate deaminase family protein
1588	 51.41	0	1956110..1956463	-	117	34541468	-	PG1857	-	hypothetical protein
1589	 51.81	0	1956628..1957125	-	165	34541469	-	PG1858	-	flavodoxin FldA
1590	 57.62	+1	1957264..1958424	-	386	34541470	-	PG1859	-	glycerate kinase family protein
1591	 46.58	0	1958664..1959848	-	394	34541471	-	PG1860	-	hypothetical protein
1592	 48.54	0	1959977..1960147	-	56	34541472	-	PG1861	-	hypothetical protein
1593	 45.58	0	1960160..1960453	-	97	34541473	-	PG1862	-	hypothetical protein
1594	 49.67	0	1960454..1960606	-	50	34541474	-	PG1863	-	hypothetical protein
1595	 42.80	-1	1960599..1964399	-	1266	34541475	-	PG1864	-	leucine-rich protein
1596	 53.17	0	1964671..1964796	+	41	34541476	-	PG1866	-	hypothetical protein
1597	 50.38	0	1965188..1965709	-	173	34541477	-	PG1868	-	hypothetical protein
1598	 51.19	0	1965745..1965912	-	55	34541478	-	PG1869	-	hypothetical protein
1599	 52.88	0	1965958..1966617	-	219	34541479	-	PG1870	-	UbiE/COQ5 family methlytransferase
1600	 41.92	-1	1966659..1966949	-	96	34541480	-	PG1871	-	hypothetical protein
1601	 53.33	0	1967022..1969001	-	659	34541481	hutU	PG1872	-	urocanate hydratase
1602	 53.68	+1	1969343..1969750	-	135	34541482	-	PG1874	-	hypothetical protein
1603	 49.74	0	1969737..1970711	-	324	34541483	-	PG1875	-	hemolysin
1604	 50.72	0	1970723..1971550	-	275	34541484	-	PG1876	-	hypothetical protein
1605	 48.05	0	1971579..1972937	-	452	34541485	nhaA	PG1877	-	Na+/H+ antiporter
1606	 51.39	0	1973068..1974540	+	490	34541486	cysS	PG1878	-	cysteinyl-tRNA synthetase
1607	 46.76	0	1974591..1975610	+	339	34541487	-	PG1879	-	hypothetical protein
1608	 48.37	0	1975621..1976631	+	336	34541488	-	PG1880	-	glycosyl transferase, group 2 family protein
1609	 46.43	0	1976664..1978106	+	480	34541489	-	PG1881	-	hypothetical protein
1610	 50.22	0	1979058..1981082	-	674	34541490	-	PG1884	-	alpha-L-fucosidase precursor, putative
1611	 51.87	0	1981155..1983242	-	695	34541491	ppk	PG1885	-	polyphosphate kinase
1612	 51.84	0	1983406..1984626	-	406	34541492	hflX	PG1886	-	GTP-binding protein HflX
1613	 54.59	+1	1984705..1985739	+	344	34541493	-	PG1887	-	tRNA 2-selenouridine synthase
1614	 53.98	+1	1985736..1986350	+	204	34541494	-	PG1888	-	hypothetical protein
1615	 42.88	-1	1986491..1987150	+	219	34541495	-	PG1889	-	hypothetical protein
1616	 42.11	-1	1987705..1987932	+	75	34541496	-	PG1890	-	putative lipoprotein
1617	 33.92	-2	1987996..1988505	+	169	34541497	-	PG1891	-	hypothetical protein
1618	 38.24	-2	1989565..1989951	+	128	34541498	-	PG1892	-	hypothetical protein
1619	 34.75	-2	1991100..1991873	+	257	34541499	-	PG1893	-	hypothetical protein
1620	 40.24	-1	1992417..1992995	+	192	34541500	-	PG1894	-	hypothetical protein
1621	 31.62	-2	1993602..1994300	+	232	34541501	-	PG1895	-	hypothetical protein
1622	 53.26	0	1994726..1996015	+	429	34541502	metK	PG1896	-	S-adenosylmethionine synthetase
1623	 51.47	0	1996143..1996820	-	225	34541503	-	PG1897	-	thiamin pyrophosphokinase catalytic subunit
1624	 52.55	0	1996817..1997425	-	202	34541504	-	PG1898	-	transporter, putative
1625	 51.99	0	1997430..1999814	-	794	34541505	-	PG1899	-	TonB-dependent receptor, putative
1626	 53.69	+1	1999889..2000836	-	315	34541506	-	PG1900	-	ribosome-associated GTPase
1627	 52.58	0	2000921..2001481	-	186	161579528	frr	PG1901	-	ribosome recycling factor
1628	 52.92	0	2001518..2002237	-	239	34541508	pyrH	PG1902	-	uridylate kinase
1629	 52.06	0	2002320..2004311	-	663	34541509	-	PG1903	-	hypothetical protein
1630	 44.24	0	2004522..2004851	-	109	34541510	-	PG1904	-	hypothetical protein
1631	 48.16	0	2005547..2006632	+	361	34541511	-	PG1906	-	ISPg1, transposase
1632	 34.16	-2	2007935..2008780	+	281	34541512	-	PG1908	-	hypothetical protein
1633	 45.55	0	2010372..2010854	-	160	34541513	rplQ	PG1910	-	50S ribosomal protein L17
1634	 43.10	-1	2010860..2011852	-	330	34541514	rpoA	PG1911	-	DNA-directed RNA polymerase subunit alpha
1635	 46.04	0	2011865..2012470	-	201	34541515	rpsD	PG1912	-	30S ribosomal protein S4
1636	 44.70	0	2012630..2013016	-	128	34541516	rpsK	PG1913	-	30S ribosomal protein S11
1637	 45.14	0	2013028..2013408	-	126	34541517	rpsM	PG1914	-	30S ribosomal protein S13
1638	 39.32	-1	2013441..2013557	-	38	34541518	rpmJ	PG1915	-	50S ribosomal protein L36
1639	 40.18	-1	2013574..2013792	-	72	34541519	infA	PG1916	-	translation initiation factor IF-1
1640	 45.17	0	2013795..2014580	-	261	34541520	map	PG1917	-	methionine aminopeptidase, type I
1641	 44.44	0	2014580..2015920	-	446	34541521	secY	PG1918	-	preprotein translocase subunit SecY
1642	 43.85	-1	2015925..2016371	-	148	34541522	rplO	PG1919	-	50S ribosomal protein L15
1643	 37.85	-2	2016397..2016573	-	58	34541523	rpmD	PG1920	-	50S ribosomal protein L30
1644	 46.82	0	2016593..2017111	-	172	34541524	rpsE	PG1921	-	30S ribosomal protein S5
1645	 43.19	-1	2017117..2017461	-	114	34541525	rplR	PG1922	-	50S ribosomal protein L18
1646	 45.11	0	2017480..2018031	-	183	34541526	rplF	PG1923	-	50S ribosomal protein L6
1647	 42.42	-1	2018050..2018445	-	131	34541527	rpsH	PG1924	-	30S ribosomal protein S8
1648	 47.78	0	2018496..2018765	-	89	34541528	rpsN	PG1925	-	30S ribosomal protein S14
1649	 43.14	-1	2018767..2019327	-	186	34541529	rplE	PG1926	-	50S ribosomal protein L5
1650	 42.99	-1	2019327..2019647	-	106	34541530	rplX	PG1927	-	50S ribosomal protein L24
1651	 47.54	0	2019670..2020035	-	121	34541531	rplN	PG1928	-	50S ribosomal protein L14
1652	 40.00	-1	2020037..2020291	-	84	34541532	rpsQ	PG1929	-	30S ribosomal protein S17
1653	 45.64	0	2020305..2020499	-	64	34541533	rpmC	PG1930	-	50S ribosomal protein L29
1654	 45.75	0	2020505..2020939	-	144	34541534	rplP	PG1931	-	50S ribosomal protein L16
1655	 49.80	0	2020960..2021700	-	246	34541535	rpsC	PG1932	-	30S ribosomal protein S3
1656	 49.00	0	2021707..2022057	-	116	34541536	rplV	PG1933	-	50S ribosomal protein L22
1657	 44.44	0	2022166..2022435	-	89	34541537	rpsS	PG1934	-	30S ribosomal protein S19
48.73	MEAN

4.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.