IslandPathversion 1.0

IslandPath Analysis: Porphyromonas gingivalis W83



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.73 STD DEV: 4.83
Porphyromonas gingivalis W83, complete genome - 1..2343476
1909 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1521	 52.72	0	1867194..1867982	+	262	34541401	-	PG1778	-	hypothetical protein
1522	 53.13	0	1868064..1868558	+	164	34541402	-	PG1779	-	hypothetical protein
1523	 51.68	0	1868926..1870113	+	395	34541403	bioF-3	PG1780	-	8-amino-7-oxononanoate synthase
1524	 47.62	0	1870163..1870792	+	209	34541404	udk	PG1781	-	uridine kinase
1525	 48.06	0	1870834..1872021	+	395	34541405	-	PG1782	-	hypothetical protein
1526	 46.27	0	1872008..1872718	+	236	34541406	-	PG1783	-	glycosyl transferase, group 2 family protein
1527	 48.93	0	1872706..1873500	+	264	34541407	-	PG1784	-	hypothetical protein
1528	 46.89	0	1874498..1875382	+	294	34541408	-	PG1786	-	hypothetical protein
1529	 47.44	0	1875531..1875998	-	155	34541409	-	PG1787	-	hypothetical protein
1530	 47.72	0	1876116..1877387	+	423	34541410	-	PG1788	-	cysteine peptidase, putative
1531	 52.48	0	1877507..1879543	-	678	34541411	dcp-2	PG1789	-	peptidyl-dipeptidase Dcp
1532	 52.26	0	1879560..1881044	-	494	34541412	-	PG1790	-	hypothetical protein
1533	 51.39	0	1881041..1881256	-	71	34541413	-	PG1791	-	hypothetical protein
1534	 49.22	0	1881762..1884065	+	767	34541414	-	PG1792	-	sodium/hydrogen antiporter
1535	 50.82	0	1884062..1886068	+	668	34541415	glgB	PG1793	-	1,4-alpha-glucan branching enzyme
1536	 52.25	0	1886118..1888898	+	926	34541416	polA	PG1794	-	DNA polymerase type I
1537	 44.28	0	1889045..1889866	-	273	34541417	-	PG1795	-	hypothetical protein
1538	 46.29	0	1890153..1893038	+	961	34541418	-	PG1797	-	DNA-binding response regulator/sensor histidine kinase
1539	 46.14	0	1893118..1894335	-	405	34541419	-	PG1798	-	immunoreactive 46 kDa antigen PG99
1540	 48.10	0	1894639..1894848	+	69	34541420	-	PG1799	-	hypothetical protein
1541	 47.04	0	1895086..1895676	+	196	34541421	-	PG1801	-	v-type ATPase, subunit E, putative
1542	 50.69	0	1895680..1896618	+	312	34541422	-	PG1802	-	hypothetical protein
1543	 50.43	0	1896628..1898382	+	584	34541423	atpA	PG1803	-	V-type ATP synthase subunit A
1544	 51.67	0	1898394..1899713	+	439	34541424	atpB	PG1804	-	V-type ATP synthase subunit B
1545	 48.78	0	1899729..1900343	+	204	34541425	atpD	PG1805	-	V-type ATP synthase subunit D
1546	 49.42	0	1900340..1902154	+	604	34541426	atpI	PG1806	-	v-type ATPase, subunit I
1547	 50.52	0	1902209..1902685	+	158	34541427	atpK	PG1807	-	v-type ATPase, subunit K
1548	 48.97	0	1903045..1905333	-	762	34541428	spoT	PG1808	-	guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
1549	 49.08	0	1905581..1906126	-	181	34541429	-	PG1809	-	2-oxoglutarate oxidoreductase, gamma subunit
1550	 49.64	0	1906155..1906847	-	230	34541430	-	PG1810	-	2-oxoglutarate oxidoreductase, beta subunit
1551	 47.31	0	1906943..1907035	+	30	34541431	-	PG1811	-	hypothetical protein
1552	 51.69	0	1907136..1908197	-	353	34541432	-	PG1812	-	2-ketoisovalerate ferredoxin reductase
1553	 45.18	0	1908237..1908464	-	75	34541433	-	PG1813	-	ferredoxin, 4Fe-4S
1554	 48.81	0	1908696..1910717	-	673	34541434	dnaG	PG1814	-	DNA primase
1555	 52.55	0	1910759..1911523	-	254	34541435	kdsB	PG1815	-	3-deoxy-manno-octulosonate cytidylyltransferase
1556	 52.11	0	1911520..1912041	-	173	34541436	-	PG1816	-	quinone family NAD(P)H dehydrogenase
1557	 45.96	0	1912310..1913125	-	271	34541437	-	PG1817	-	hypothetical protein
1558	 49.51	0	1913118..1913834	-	238	34541438	-	PG1818	-	hypothetical protein
1559	 50.08	0	1913786..1914412	-	208	34541439	-	PG1819	-	hypothetical protein
1560	 48.96	0	1914483..1915979	-	498	34541440	nrfA	PG1820	-	cytochrome c nitrite reductase
1561	 47.22	0	1916001..1916612	-	203	34541441	nrfH	PG1821	-	cytochrome c nitrite reductase, small subunit NrfH
1562	 44.04	0	1917457..1918110	+	217	34541442	-	PG1823	-	hypothetical protein
1563	 51.80	0	1918243..1919520	-	425	34541443	eno	PG1824	-	phosphopyruvate hydratase
1564	 44.44	0	1919600..1919761	-	53	34541444	-	PG1825	-	hypothetical protein
1565	 49.52	0	1919736..1920155	-	139	34541445	-	PG1826	-	hypothetical protein
1566	 44.70	0	1920154..1920795	+	213	34541446	-	PG1827	-	ECF subfamily RNA polymerase sigma factor
1567	 45.54	0	1921014..1921226	-	70	34541447	-	PG1828	-	putative lipoprotein
1568	 49.88	0	1921397..1923070	-	557	34541448	-	PG1829	-	long-chain-fatty-acid--CoA ligase, putative
1569	 53.81	+1	1923545..1925512	-	655	34541449	recQ-2	PG1831	-	ATP-dependent DNA helicase RecQ
1570	 50.12	0	1926295..1927110	+	271	34541450	-	PG1834	-	glycogen synthase-related protein
1571	 48.68	0	1927213..1928580	+	455	34541451	-	PG1835	-	putative lipoprotein
1572	 48.46	0	1928683..1929918	+	411	34541452	nupG	PG1836	-	nucleoside permease NupG
1573	 49.78	0	1930477..1936794	+	2105	34541453	-	PG1837	-	hemagglutinin protein HagA
1574	 48.25	0	1937242..1937355	+	37	34541454	-	PG1840	-	hypothetical protein
1575	 48.48	0	1937450..1938373	+	307	34541455	-	PG1841	-	hypothetical protein
1576	 48.34	0	1938381..1939373	+	330	34541456	-	PG1842	-	acetyltransferase
1577	 50.72	0	1946177..1946314	+	45	34541457	-	PG1846	-	hypothetical protein
1578	 47.24	0	1946317..1946697	-	126	34541458	-	PG1847	-	endoribonuclease L-PSP, putative
1579	 51.73	0	1946723..1947472	-	249	34541459	-	PG1848	-	RNA methyltransferase
1580	 50.54	0	1947469..1949124	-	551	34541460	recN	PG1849	-	DNA repair protein RecN
1581	 47.19	0	1949139..1950047	-	302	34541461	-	PG1850	-	hypothetical protein
1582	 52.35	0	1950044..1951258	-	404	34541462	coaBC	PG1851	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase
1583	 49.36	0	1951284..1952063	-	259	34541463	-	PG1852	-	exonuclease
1584	 49.91	0	1952076..1953209	-	377	34541464	dnaN	PG1853	-	DNA polymerase III, beta subunit
1585	 52.87	0	1953415..1953972	-	185	34541465	-	PG1854	-	5-formyltetrahydrofolate cyclo-ligase family protein
1586	 50.21	0	1953932..1955566	-	544	34541466	-	PG1855	-	carboxyl-terminal protease
1587	 49.34	0	1955574..1956029	-	151	34541467	-	PG1856	-	cytidine/deoxycytidylate deaminase family protein
1588	 51.41	0	1956110..1956463	-	117	34541468	-	PG1857	-	hypothetical protein
1589	 51.81	0	1956628..1957125	-	165	34541469	-	PG1858	-	flavodoxin FldA
1590	 57.62	+1	1957264..1958424	-	386	34541470	-	PG1859	-	glycerate kinase family protein
1591	 46.58	0	1958664..1959848	-	394	34541471	-	PG1860	-	hypothetical protein
1592	 48.54	0	1959977..1960147	-	56	34541472	-	PG1861	-	hypothetical protein
1593	 45.58	0	1960160..1960453	-	97	34541473	-	PG1862	-	hypothetical protein
1594	 49.67	0	1960454..1960606	-	50	34541474	-	PG1863	-	hypothetical protein
1595	 42.80	-1	1960599..1964399	-	1266	34541475	-	PG1864	-	leucine-rich protein
1596	 53.17	0	1964671..1964796	+	41	34541476	-	PG1866	-	hypothetical protein
1597	 50.38	0	1965188..1965709	-	173	34541477	-	PG1868	-	hypothetical protein
1598	 51.19	0	1965745..1965912	-	55	34541478	-	PG1869	-	hypothetical protein
1599	 52.88	0	1965958..1966617	-	219	34541479	-	PG1870	-	UbiE/COQ5 family methlytransferase
1600	 41.92	-1	1966659..1966949	-	96	34541480	-	PG1871	-	hypothetical protein
1601	 53.33	0	1967022..1969001	-	659	34541481	hutU	PG1872	-	urocanate hydratase
1602	 53.68	+1	1969343..1969750	-	135	34541482	-	PG1874	-	hypothetical protein
1603	 49.74	0	1969737..1970711	-	324	34541483	-	PG1875	-	hemolysin
1604	 50.72	0	1970723..1971550	-	275	34541484	-	PG1876	-	hypothetical protein
1605	 48.05	0	1971579..1972937	-	452	34541485	nhaA	PG1877	-	Na+/H+ antiporter
1606	 51.39	0	1973068..1974540	+	490	34541486	cysS	PG1878	-	cysteinyl-tRNA synthetase
1607	 46.76	0	1974591..1975610	+	339	34541487	-	PG1879	-	hypothetical protein
1608	 48.37	0	1975621..1976631	+	336	34541488	-	PG1880	-	glycosyl transferase, group 2 family protein
1609	 46.43	0	1976664..1978106	+	480	34541489	-	PG1881	-	hypothetical protein
1610	 50.22	0	1979058..1981082	-	674	34541490	-	PG1884	-	alpha-L-fucosidase precursor, putative
1611	 51.87	0	1981155..1983242	-	695	34541491	ppk	PG1885	-	polyphosphate kinase
1612	 51.84	0	1983406..1984626	-	406	34541492	hflX	PG1886	-	GTP-binding protein HflX
1613	 54.59	+1	1984705..1985739	+	344	34541493	-	PG1887	-	tRNA 2-selenouridine synthase
1614	 53.98	+1	1985736..1986350	+	204	34541494	-	PG1888	-	hypothetical protein
1615	 42.88	-1	1986491..1987150	+	219	34541495	-	PG1889	-	hypothetical protein
1616	 42.11	-1	1987705..1987932	+	75	34541496	-	PG1890	-	putative lipoprotein
1617	 33.92	-2	1987996..1988505	+	169	34541497	-	PG1891	-	hypothetical protein
1618	 38.24	-2	1989565..1989951	+	128	34541498	-	PG1892	-	hypothetical protein
1619	 34.75	-2	1991100..1991873	+	257	34541499	-	PG1893	-	hypothetical protein
1620	 40.24	-1	1992417..1992995	+	192	34541500	-	PG1894	-	hypothetical protein
48.73	MEAN

4.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.