IslandPathversion 1.0

IslandPath Analysis: Porphyromonas gingivalis W83



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.73 STD DEV: 4.83
Porphyromonas gingivalis W83, complete genome - 1..2343476
1909 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1210	 49.05	0	1493571..1495256	-	561	34541090	-	PG1411	-	hypothetical protein
1211	 49.54	0	1497149..1499764	+	871	34541091	-	PG1414	-	hypothetical protein
1212	 54.14	+1	1500197..1501138	+	313	34541092	fabK	PG1416	-	enoyl-(acyl-carrier-protein) reductase II
1213	 52.64	0	1501435..1503081	+	548	34541093	fumB	PG1417	-	fumarate hydratase class I, anaerobic
1214	 50.53	0	1503204..1505012	+	602	34541094	dnaX	PG1418	-	DNA polymerase III, gamma and tau subunits
1215	 44.95	0	1505137..1505532	+	131	34541095	-	PG1419	-	ISPg5, transposase Orf1
1216	 50.05	0	1505586..1506524	+	312	34541096	-	PG1420	-	ISPg5, transposase Orf2
1217	 43.27	-1	1506964..1507134	-	56	34541097	-	PG1421	-	ferredoxin, 4Fe-4S
1218	 46.71	0	1507470..1509002	-	510	34541098	dacB	PG1422	-	D-alanyl-D-alanine carboxypeptidase
1219	 35.35	-2	1508981..1509178	-	65	34541099	-	PG1423	-	hypothetical protein
1220	 47.28	0	1509227..1510897	-	556	34541100	-	PG1424	-	peptidylarginine deiminase
1221	 49.06	0	1511242..1511400	-	52	34541101	-	PG1426	-	hypothetical protein
1222	 46.17	0	1511955..1514486	-	843	34541102	-	PG1427	-	thiol protease/hemagglutinin PrtT precursor, putative
1223	 49.38	0	1514627..1515112	-	161	34541103	ribH	PG1428	-	riboflavin synthase subunit beta
1224	 35.14	-2	1515093..1515203	-	36	34541104	-	PG1429	-	hypothetical protein
1225	 44.10	0	1515204..1515890	-	228	34541105	-	PG1430	-	TPR domain-containing protein
1226	 42.84	-1	1516076..1516759	-	227	34541106	-	PG1431	-	LuxR family DNA-binding response regulator
1227	 39.07	-1	1516824..1518689	-	621	34541107	-	PG1432	-	sensor histidine kinase
1228	 49.07	0	1518971..1519186	+	71	34541108	-	PG1433	-	hydrolase
1229	 48.88	0	1519162..1519830	+	222	34541109	ispD	PG1434	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1230	 40.67	-1	1520443..1521669	+	408	34541110	-	PG1435	-	integrase
1231	 32.49	-2	1521796..1523814	+	672	34541111	-	PG1436	-	ATPase, putative
1232	 32.51	-2	1524675..1526750	-	691	34541112	-	PG1439	-	hypothetical protein
1233	 31.07	-2	1526740..1527357	-	205	34541113	-	PG1440	-	hypothetical protein
1234	 50.00	0	1527448..1527615	-	55	34541114	-	PG1441	-	lysozyme-related protein
1235	 41.72	-1	1527692..1528120	-	142	34541115	-	PG1442	-	hypothetical protein
1236	 43.17	-1	1528886..1529302	+	138	34541116	-	PG1444	-	hypothetical protein
1237	 42.88	-1	1529998..1531317	-	439	34541117	-	PG1446	-	MATE efflux family protein
1238	 40.87	-1	1531453..1532301	-	282	34541118	-	PG1447	-	AraC family transcriptional regulator
1239	 48.16	0	1532424..1533509	+	361	34541119	-	PG1448	-	ISPg1, transposase
1240	 31.57	-2	1533672..1534352	-	226	34541120	-	PG1449	-	hypothetical protein
1241	 40.63	-1	1534390..1534704	-	104	34541121	-	PG1450	-	hypothetical protein
1242	 41.42	-1	1534837..1535244	+	135	34541122	-	PG1451	-	hypothetical protein
1243	 43.25	-1	1535370..1535732	-	120	34541123	-	PG1452	-	putative lipoprotein
1244	 45.47	0	1535739..1536941	-	400	34541124	-	PG1453	-	integrase
1245	 47.24	0	1536967..1538196	-	409	34541125	-	PG1454	-	integrase
1246	 48.08	0	1538790..1539257	+	155	34541126	-	PG1457	-	hypothetical protein
1247	 46.84	0	1539284..1539742	+	152	34541127	-	PG1458	-	hypothetical protein
1248	 47.10	0	1539722..1539859	-	45	34541128	-	PG1459	-	hypothetical protein
1249	 45.00	0	1540100..1540459	+	119	34541129	-	PG1460	-	hypothetical protein
1250	 40.42	-1	1540466..1540987	+	173	34541130	-	PG1461	-	hypothetical protein
1251	 45.18	0	1541000..1541227	+	75	34541131	-	PG1462	-	hypothetical protein
1252	 40.78	-1	1541250..1541531	+	93	34541132	-	PG1463	-	hypothetical protein
1253	 47.60	0	1542122..1542766	+	214	34541133	-	PG1465	-	hypothetical protein
1254	 48.34	0	1542763..1543335	+	190	34541134	-	PG1466	-	hypothetical protein
1255	 50.16	0	1543350..1543961	+	203	34541135	-	PG1467	-	UbiE/COQ5 family methlytransferase
1256	 32.60	-2	1545080..1548088	-	1002	34541136	-	PG1469	-	type I restriction-modification system, M subunit, putative
1257	 42.86	-1	1548261..1548491	+	76	34541137	-	PG1470	-	hypothetical protein
1258	 47.01	0	1548671..1549138	+	155	34541138	-	PG1471	-	hypothetical protein
1259	 45.52	0	1549173..1549820	+	215	34541139	-	PG1472	-	hypothetical protein
1260	 49.89	0	1549851..1550315	-	154	34541140	-	PG1473	-	conjugative transposon protein TraQ
1261	 51.64	0	1550328..1550906	-	192	34541141	-	PG1474	-	conjugative transposon protein TraO
1262	 53.02	0	1550900..1551925	-	341	34541142	-	PG1475	-	conjugative transposon protein TraN
1263	 54.48	+1	1551948..1553309	-	453	34541143	-	PG1476	-	conjugative transposon protein TraM
1264	 49.31	0	1553299..1553586	-	95	34541144	-	PG1477	-	hypothetical protein
1265	 50.32	0	1553583..1554206	-	207	34541145	-	PG1478	-	conjugative transposon protein TraK
1266	 54.29	+1	1554218..1555324	-	368	34541146	-	PG1479	-	conjugative transposon protein TraJ
1267	 50.00	0	1555356..1555985	-	209	34541147	-	PG1480	-	conjugative transposon protein TraI
1268	 53.72	+1	1556012..1558537	-	841	34541148	-	PG1481	-	conjugative transposon protein TraG
1269	 57.44	+1	1558534..1558869	-	111	34541149	-	PG1482	-	conjugative transposon protein TraF
1270	 53.80	+1	1558873..1559175	-	100	34541150	-	PG1483	-	conjugative transposon protein TraE
1271	 54.04	+1	1559365..1560069	-	234	34541151	-	PG1484	-	hypothetical protein
1272	 53.75	+1	1560074..1560460	-	128	34541152	-	PG1485	-	conjugative transposon protein TraC
1273	 54.94	+1	1560447..1561256	-	269	34541153	-	PG1486	-	conjugative transposon protein TraA
1274	 56.75	+1	1561608..1561859	+	83	34541154	-	PG1487	-	hypothetical protein
1275	 49.00	0	1561887..1562288	+	133	34541155	-	PG1488	-	hypothetical protein
1276	 52.46	0	1562273..1563553	+	426	34541156	-	PG1489	-	hypothetical protein
1277	 49.05	0	1563555..1565564	+	669	34541157	-	PG1490	-	TraG family protein
1278	 42.25	-1	1565881..1566093	+	70	34541158	-	PG1491	-	hypothetical protein
1279	 36.54	-2	1566190..1566906	+	238	34541159	-	PG1492	-	hypothetical protein
1280	 37.48	-2	1566923..1569598	+	891	34541160	-	PG1493	-	hypothetical protein
1281	 54.11	+1	1569981..1571294	+	437	34541161	-	PG1494	-	hypothetical protein
1282	 55.35	+1	1571383..1573476	+	697	34541162	topB-2	PG1495	-	DNA topoisomerase III
1283	 50.72	0	1573482..1573757	+	91	34541163	-	PG1496	-	hypothetical protein
1284	 59.66	+2	1574225..1574695	+	156	34541164	-	PG1497	-	histone-like family DNA-binding protein
1285	 43.93	0	1574796..1575710	+	304	34541165	-	PG1498	-	hypothetical protein
1286	 43.98	0	1575664..1576161	+	165	34541166	-	PG1499	-	hypothetical protein
1287	 52.23	0	1576239..1578530	+	763	34541167	-	PG1500	-	hypothetical protein
1288	 35.83	-2	1578590..1579189	-	199	34541168	-	PG1501	-	TetR family transcriptional regulator
1289	 36.38	-2	1580365..1581315	+	316	34541169	-	PG1503	-	LytB-related protein
1290	 34.45	-2	1581333..1582319	+	328	34541170	-	PG1504	-	NAD dependent protein
1291	 36.63	-2	1582383..1583261	+	292	34541171	-	PG1505	-	radical SAM domain-containing protein
1292	 46.26	0	1583760..1586189	+	809	34541172	-	PG1507	-	hypothetical protein
1293	 43.72	-1	1586200..1586748	+	182	34541173	-	PG1508	-	hypothetical protein
1294	 43.65	-1	1586831..1587499	+	222	34541174	-	PG1509	-	HAD-superfamily hydrolase, subfamily IA, variant 1 family protein
1295	 39.81	-1	1587519..1587626	-	35	34541175	-	PG1510	-	hypothetical protein
1296	 45.06	0	1587749..1587910	+	53	34541176	-	PG1511	-	hypothetical protein
1297	 41.91	-1	1587903..1588520	-	205	34541177	-	PG1512	-	hypothetical protein
1298	 36.98	-2	1588609..1589925	+	438	34541178	-	PG1513	-	phosphoribosyltransferase, putative/phosphoglycerate mutase family protein
1299	 36.46	-2	1589940..1590929	+	329	34541179	-	PG1514	-	glycerol dehydrogenase-related protein
1300	 34.42	-2	1590917..1591930	+	337	34541180	-	PG1515	-	ribulose bisphosphate carboxylase-related protein
1301	 31.30	-2	1591881..1593257	+	458	34541181	-	PG1516	-	hypothetical protein
1302	 30.65	-2	1595845..1597485	+	546	34541182	-	PG1519	-	hypothetical protein
1303	 52.29	0	1598144..1599193	-	349	34541183	-	PG1521	-	O-succinylbenzoic acid--CoA ligase
1304	 53.22	0	1599190..1600260	-	356	34541184	-	PG1522	-	mandelate racemase/muconate lactonizing enzyme family protein
1305	 50.92	0	1600260..1601078	-	272	34541185	menB	PG1523	-	naphthoate synthase
1306	 52.08	0	1601103..1602836	-	577	34541186	menD	PG1524	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
1307	 51.22	0	1602849..1603955	-	368	34541187	-	PG1525	-	isochorismate synthase, putative
1308	 43.68	-1	1604022..1605461	-	479	34541188	-	PG1526	-	hypothetical protein
1309	 35.53	-2	1605657..1605884	-	75	34541189	-	PG1527	-	hypothetical protein
48.73	MEAN

4.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.