IslandPath Analysis: Porphyromonas gingivalis W83



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.73   STD DEV: 4.83
Porphyromonas gingivalis W83, complete genome - 1..2343476
1909 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1183	 48.14	0	1459077..1460015	+	312	34541063	-	PG1379	-	ABC transporter, periplasmic substrate-binding protein, putative
1184	 50.36	0	1460067..1460765	+	232	34541064	-	PG1380	-	ABC transporter, ATP-binding protein
1185	 48.67	0	1460762..1461511	+	249	34541065	-	PG1381	-	ABC transporter, permease protein
1186	 45.35	0	1461471..1462610	+	379	34541066	-	PG1382	-	hypothetical protein
1187	 46.48	0	1462809..1463447	+	212	34541067	-	PG1383	-	amino acid exporter, putative
1188	 46.72	0	1465223..1466425	-	400	34541068	-	PG1385	-	TPR domain-containing protein
1189	 50.66	0	1466459..1469038	-	859	34541069	gyrA	PG1386	-	DNA gyrase, A subunit
1190	 52.86	0	1469222..1470148	-	308	34541070	-	PG1387	-	hypothetical protein
1191	 53.96	+1	1470185..1470979	-	264	34541071	-	PG1388	-	hypothetical protein
1192	 53.81	+1	1470960..1471418	-	152	34541072	-	PG1389	-	histone-like family DNA-binding protein
1193	 57.01	+1	1471810..1473021	+	403	34541073	-	PG1391	-	hypothetical protein
1194	 53.02	0	1473049..1474506	-	485	34541074	-	PG1392	-	rod shape-determining protein RodA, putative
1195	 54.07	+1	1474496..1476361	-	621	34541075	-	PG1393	-	penicillin-binding protein 2, putative
1196	 47.78	0	1476354..1476872	-	172	34541076	-	PG1394	-	hypothetical protein
1197	 51.80	0	1476872..1477759	-	295	34541077	-	PG1395	-	cell shape-determining protein MreC, putative
1198	 50.88	0	1477797..1478816	-	339	34541078	mreB	PG1396	-	cell shape-determining protein MreB
1199	 49.44	0	1478919..1480445	-	508	34541079	purH	PG1397	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
1200	 52.30	0	1480834..1481007	+	57	34541080	-	PG1398	-	hypothetical protein
1201	 48.55	0	1483489..1484868	-	459	34541081	tnaA	PG1401	-	tryptophanase
1202	 47.80	0	1485121..1486053	-	310	34541082	-	PG1402	-	AP endonuclease domain-containing protein
1203	 48.56	0	1486263..1487129	-	288	34541083	-	PG1403	-	rhomboid family protein
1204	 47.70	0	1487161..1487877	-	238	34541084	-	PG1404	-	rhomboid family protein
1205	 48.21	0	1487904..1490759	-	951	34541085	-	PG1405	-	hypothetical protein
1206	 48.42	0	1491202..1491738	-	178	34541086	-	PG1407	-	nitroimidazole resistance protein, putative
1207	 49.17	0	1492001..1492966	+	321	34541087	-	PG1408	-	CzcD family heavy metal efflux protein
1208	 48.09	0	1492963..1493355	-	130	34541088	-	PG1409	-	hypothetical protein
1209	 42.71	-1	1493401..1493496	+	31	34541089	-	PG1410	-	hypothetical protein
1210	 49.05	0	1493571..1495256	-	561	34541090	-	PG1411	-	hypothetical protein
1211	 49.54	0	1497149..1499764	+	871	34541091	-	PG1414	-	hypothetical protein
1212	 54.14	+1	1500197..1501138	+	313	34541092	fabK	PG1416	-	enoyl-(acyl-carrier-protein) reductase II
1213	 52.64	0	1501435..1503081	+	548	34541093	fumB	PG1417	-	fumarate hydratase class I, anaerobic
1214	 50.53	0	1503204..1505012	+	602	34541094	dnaX	PG1418	-	DNA polymerase III, gamma and tau subunits
1215	 44.95	0	1505137..1505532	+	131	34541095	-	PG1419	-	ISPg5, transposase Orf1
1216	 50.05	0	1505586..1506524	+	312	34541096	-	PG1420	-	ISPg5, transposase Orf2
1217	 43.27	-1	1506964..1507134	-	56	34541097	-	PG1421	-	ferredoxin, 4Fe-4S
1218	 46.71	0	1507470..1509002	-	510	34541098	dacB	PG1422	-	D-alanyl-D-alanine carboxypeptidase
1219	 35.35	-2	1508981..1509178	-	65	34541099	-	PG1423	-	hypothetical protein
1220	 47.28	0	1509227..1510897	-	556	34541100	-	PG1424	-	peptidylarginine deiminase
1221	 49.06	0	1511242..1511400	-	52	34541101	-	PG1426	-	hypothetical protein
1222	 46.17	0	1511955..1514486	-	843	34541102	-	PG1427	-	thiol protease/hemagglutinin PrtT precursor, putative
1223	 49.38	0	1514627..1515112	-	161	34541103	ribH	PG1428	-	riboflavin synthase subunit beta
1224	 35.14	-2	1515093..1515203	-	36	34541104	-	PG1429	-	hypothetical protein
1225	 44.10	0	1515204..1515890	-	228	34541105	-	PG1430	-	TPR domain-containing protein
1226	 42.84	-1	1516076..1516759	-	227	34541106	-	PG1431	-	LuxR family DNA-binding response regulator
1227	 39.07	-1	1516824..1518689	-	621	34541107	-	PG1432	-	sensor histidine kinase
1228	 49.07	0	1518971..1519186	+	71	34541108	-	PG1433	-	hydrolase
1229	 48.88	0	1519162..1519830	+	222	34541109	ispD	PG1434	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
1230	 40.67	-1	1520443..1521669	+	408	34541110	-	PG1435	-	integrase
1231	 32.49	-2	1521796..1523814	+	672	34541111	-	PG1436	-	ATPase, putative
1232	 32.51	-2	1524675..1526750	-	691	34541112	-	PG1439	-	hypothetical protein
1233	 31.07	-2	1526740..1527357	-	205	34541113	-	PG1440	-	hypothetical protein
1234	 50.00	0	1527448..1527615	-	55	34541114	-	PG1441	-	lysozyme-related protein
1235	 41.72	-1	1527692..1528120	-	142	34541115	-	PG1442	-	hypothetical protein
1236	 43.17	-1	1528886..1529302	+	138	34541116	-	PG1444	-	hypothetical protein
1237	 42.88	-1	1529998..1531317	-	439	34541117	-	PG1446	-	MATE efflux family protein
1238	 40.87	-1	1531453..1532301	-	282	34541118	-	PG1447	-	AraC family transcriptional regulator
1239	 48.16	0	1532424..1533509	+	361	34541119	-	PG1448	-	ISPg1, transposase
1240	 31.57	-2	1533672..1534352	-	226	34541120	-	PG1449	-	hypothetical protein
1241	 40.63	-1	1534390..1534704	-	104	34541121	-	PG1450	-	hypothetical protein
1242	 41.42	-1	1534837..1535244	+	135	34541122	-	PG1451	-	hypothetical protein
1243	 43.25	-1	1535370..1535732	-	120	34541123	-	PG1452	-	putative lipoprotein
1244	 45.47	0	1535739..1536941	-	400	34541124	-	PG1453	-	integrase
1245	 47.24	0	1536967..1538196	-	409	34541125	-	PG1454	-	integrase
1246	 48.08	0	1538790..1539257	+	155	34541126	-	PG1457	-	hypothetical protein
1247	 46.84	0	1539284..1539742	+	152	34541127	-	PG1458	-	hypothetical protein
1248	 47.10	0	1539722..1539859	-	45	34541128	-	PG1459	-	hypothetical protein
1249	 45.00	0	1540100..1540459	+	119	34541129	-	PG1460	-	hypothetical protein
1250	 40.42	-1	1540466..1540987	+	173	34541130	-	PG1461	-	hypothetical protein
1251	 45.18	0	1541000..1541227	+	75	34541131	-	PG1462	-	hypothetical protein
1252	 40.78	-1	1541250..1541531	+	93	34541132	-	PG1463	-	hypothetical protein
1253	 47.60	0	1542122..1542766	+	214	34541133	-	PG1465	-	hypothetical protein
1254	 48.34	0	1542763..1543335	+	190	34541134	-	PG1466	-	hypothetical protein
1255	 50.16	0	1543350..1543961	+	203	34541135	-	PG1467	-	UbiE/COQ5 family methlytransferase
1256	 32.60	-2	1545080..1548088	-	1002	34541136	-	PG1469	-	type I restriction-modification system, M subunit, putative
1257	 42.86	-1	1548261..1548491	+	76	34541137	-	PG1470	-	hypothetical protein
1258	 47.01	0	1548671..1549138	+	155	34541138	-	PG1471	-	hypothetical protein
1259	 45.52	0	1549173..1549820	+	215	34541139	-	PG1472	-	hypothetical protein
1260	 49.89	0	1549851..1550315	-	154	34541140	-	PG1473	-	conjugative transposon protein TraQ
1261	 51.64	0	1550328..1550906	-	192	34541141	-	PG1474	-	conjugative transposon protein TraO
1262	 53.02	0	1550900..1551925	-	341	34541142	-	PG1475	-	conjugative transposon protein TraN
1263	 54.48	+1	1551948..1553309	-	453	34541143	-	PG1476	-	conjugative transposon protein TraM
1264	 49.31	0	1553299..1553586	-	95	34541144	-	PG1477	-	hypothetical protein
1265	 50.32	0	1553583..1554206	-	207	34541145	-	PG1478	-	conjugative transposon protein TraK
1266	 54.29	+1	1554218..1555324	-	368	34541146	-	PG1479	-	conjugative transposon protein TraJ
1267	 50.00	0	1555356..1555985	-	209	34541147	-	PG1480	-	conjugative transposon protein TraI
1268	 53.72	+1	1556012..1558537	-	841	34541148	-	PG1481	-	conjugative transposon protein TraG
1269	 57.44	+1	1558534..1558869	-	111	34541149	-	PG1482	-	conjugative transposon protein TraF
1270	 53.80	+1	1558873..1559175	-	100	34541150	-	PG1483	-	conjugative transposon protein TraE
1271	 54.04	+1	1559365..1560069	-	234	34541151	-	PG1484	-	hypothetical protein
1272	 53.75	+1	1560074..1560460	-	128	34541152	-	PG1485	-	conjugative transposon protein TraC
1273	 54.94	+1	1560447..1561256	-	269	34541153	-	PG1486	-	conjugative transposon protein TraA
1274	 56.75	+1	1561608..1561859	+	83	34541154	-	PG1487	-	hypothetical protein
1275	 49.00	0	1561887..1562288	+	133	34541155	-	PG1488	-	hypothetical protein
1276	 52.46	0	1562273..1563553	+	426	34541156	-	PG1489	-	hypothetical protein
1277	 49.05	0	1563555..1565564	+	669	34541157	-	PG1490	-	TraG family protein
1278	 42.25	-1	1565881..1566093	+	70	34541158	-	PG1491	-	hypothetical protein
1279	 36.54	-2	1566190..1566906	+	238	34541159	-	PG1492	-	hypothetical protein
1280	 37.48	-2	1566923..1569598	+	891	34541160	-	PG1493	-	hypothetical protein
1281	 54.11	+1	1569981..1571294	+	437	34541161	-	PG1494	-	hypothetical protein
1282	 55.35	+1	1571383..1573476	+	697	34541162	topB-2	PG1495	-	DNA topoisomerase III
48.73	MEAN

4.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.