IslandPath Analysis: Porphyromonas gingivalis W83



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.73   STD DEV: 4.83
Porphyromonas gingivalis W83, complete genome - 1..2343476
1909 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
73	 52.80	0	97092..97877	+	261	34539953	-	PG0083	-	hypothetical protein
74	 55.67	+1	97972..99171	+	399	34539954	sda	PG0084	-	L-serine dehydratase, iron-sulfur-dependent, single chain form
75	 52.49	0	99312..100616	+	434	34539955	-	PG0085	-	alpha-galactosidase
76	 50.30	0	100635..102449	-	604	34539956	-	PG0086	-	DEAD-box ATP dependent DNA helicase
77	 54.11	+1	102595..103215	-	206	34539957	-	PG0087	-	SIS domain-containing protein
78	 50.66	0	103415..104632	+	405	34539958	-	PG0088	-	M16 family peptidase
79	 51.67	0	105664..106143	+	159	34539959	-	PG0090	-	Dps family protein
80	 52.55	0	106273..107490	-	405	34539960	-	PG0091	-	transporter, putative
81	 52.98	0	107549..108688	-	379	34539961	-	PG0092	-	transporter, putative
82	 56.33	+1	108733..109728	-	331	34539962	-	PG0093	-	HlyD family secretion protein
83	 55.11	+1	109778..111283	-	501	34539963	-	PG0094	-	outer membrane efflux protein, putative
84	 53.25	0	112178..114853	-	891	34539964	mutS	PG0095	-	DNA mismatch repair protein
85	 50.21	0	115146..115874	-	242	161579534	-	PG0097	-	hypothetical protein
86	 38.38	-2	115835..115933	-	32	34539966	-	PG0098	-	hypothetical protein
87	 52.64	0	115917..118376	-	819	34539967	pheT	PG0099	-	phenylalanyl-tRNA synthetase subunit beta
88	 45.24	0	119142..119309	-	55	34539968	-	PG0100	-	hypothetical protein
89	 44.29	0	119338..119556	+	72	34539969	-	PG0101	-	hypothetical protein
90	 44.65	0	121143..121301	+	52	34539970	-	PG0102	-	hypothetical protein
91	 44.23	0	121430..121585	+	51	34539971	-	PG0103	-	hypothetical protein
92	 52.51	0	125481..127508	+	675	34539972	topB-1	PG0104	-	DNA topoisomerase III
93	 37.03	-2	128858..129994	+	378	34539973	-	PG0106	-	glycosyl transferase, group 4 family protein
94	 44.17	0	130241..131449	+	402	34539974	epsD	PG0108	-	UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase
95	 38.24	-2	131471..132694	+	407	34539975	-	PG0109	-	hypothetical protein
96	 39.96	-1	132731..133771	+	346	34539976	-	PG0110	-	glycosyl transferase, group 1 family protein
97	 37.75	-2	133820..135088	+	422	34539977	-	PG0111	-	capsular polysacharride biosynthesis gene, putative
98	 42.42	-1	136065..136922	+	285	34539978	-	PG0113	-	hypothetical protein
99	 47.89	0	136919..138058	+	379	34539979	-	PG0114	-	hypothetical protein
100	 39.04	-2	138178..138615	+	145	34539980	-	PG0115	-	hexapeptide transferase family protein
101	 46.08	0	138609..139832	+	407	34539981	-	PG0116	-	hypothetical protein
102	 36.45	-2	139807..141345	+	512	34539982	-	PG0117	-	polysaccharide transport protein, putative
103	 37.12	-2	141349..142404	+	351	34539983	-	PG0118	-	glycosyl transferase, group 2 family protein
104	 45.64	0	142440..143138	+	232	34539984	-	PG0119	-	WecB/TagA/CpsF family glycosyl transferase
105	 46.60	0	143144..144304	+	386	34539985	epsC	PG0120	-	UDP-N-acetylglucosamine 2-epimerase
106	 44.19	0	144608..144874	+	88	34539986	hup-1	PG0121	-	DNA-binding protein HU
107	 46.63	0	145127..145645	+	172	34539987	-	PG0123	-	hypothetical protein
108	 57.65	+1	145704..146324	-	206	34539988	-	PG0124	-	hypothetical protein
109	 52.82	0	146328..146876	-	182	34539989	-	PG0125	-	hypothetical protein
110	 55.42	+1	146873..148108	-	411	34539990	-	PG0126	-	type I phosphodiesterase/nucleotide pyrophosphatase family protein
111	 54.62	+1	148690..149727	+	345	34539991	hemH	PG0127	-	ferrochelatase
112	 56.51	+1	149734..150708	+	324	34539992	-	PG0128	-	hypothetical protein
113	 57.51	+1	150725..151849	+	374	34539993	-	PG0129	-	mannosyltransferase
114	 50.74	0	152012..152758	-	248	34539994	gpm	PG0130	-	phosphoglyceromutase
115	 55.21	+1	153019..153114	+	31	34539995	-	PG0132	-	hypothetical protein
116	 51.33	0	154349..155854	-	501	34539996	-	PG0133	-	hypothetical protein
117	 52.62	0	155873..157225	-	450	34539997	mgtE	PG0134	-	magnesium transporter
118	 51.61	0	157257..158033	-	258	34539998	ksgA	PG0135	-	dimethyladenosine transferase
119	 48.57	0	158164..159213	+	349	34539999	-	PG0136	-	hypothetical protein
120	 51.07	0	159244..160698	+	484	34540000	pepD-1	PG0137	-	aminoacyl-histidine dipeptidase
121	 53.17	0	160813..161694	+	293	34540001	fabD	PG0138	-	malonyl CoA-acyl carrier protein transacylase
122	 54.42	+1	161876..163231	-	451	34540002	-	PG0139	-	membrane-bound lytic murein transglycosylase D, putative
123	 56.92	+1	163241..163948	-	235	34540003	-	PG0140	-	hypothetical protein
124	 57.36	+1	163968..164837	-	289	34540004	spo0J	PG0141	-	spoOJ protein
125	 56.50	+1	164845..165621	-	258	34540005	soj	PG0142	-	SpoOJ regulator protein
126	 63.14	+2	165837..166715	-	292	34540006	-	PG0143	-	carbon-nitrogen family hydrolase
127	 62.87	+2	166733..167758	-	341	34540007	-	PG0144	-	hypothetical protein
128	 53.37	0	167971..168549	+	192	34540008	-	PG0145	-	hypothetical protein
129	 56.50	+1	168498..169205	-	235	34540009	-	PG0146	-	hypothetical protein
130	 55.00	+1	169218..169757	-	179	34540010	-	PG0147	-	hypothetical protein
131	 57.66	+1	169744..170997	-	417	34540011	-	PG0148	-	sigma-54-dependent transcriptional regulator
132	 53.98	+1	171025..172293	-	422	34540012	-	PG0149	-	hypothetical protein
133	 55.02	+1	172330..173634	-	434	34540013	-	PG0150	-	hypothetical protein
134	 53.56	+1	173631..174584	-	317	34540014	ftsY	PG0151	-	signal recognition particle-docking protein FtsY
135	 56.64	+1	174611..175747	-	378	34540015	nspC	PG0152	-	carboxynorspermidine decarboxylase
136	 57.48	+1	175757..177520	-	587	34540016	aspS	PG0153	-	aspartyl-tRNA synthetase
137	 55.79	+1	177951..178943	-	330	34540017	ribD	PG0155	-	riboflavin biosynthesis protein RibD
138	 53.17	0	178968..179849	+	293	34540018	-	PG0156	-	HemK family modification methylase
139	 53.29	0	179846..180331	+	161	34540019	recX	PG0157	-	regulatory protein RecX
140	 51.55	0	180315..181055	+	246	34540020	-	PG0158	-	competence protein F-related protein
141	 49.52	0	181185..183254	-	689	34540021	pepO	PG0159	-	endopeptidase PepO
142	 51.38	0	183273..184175	-	300	34540022	-	PG0160	-	hypothetical protein
143	 44.00	0	184357..184506	-	49	34540023	-	PG0161	-	hypothetical protein
144	 51.72	0	184595..185176	-	193	34540024	-	PG0162	-	ECF subfamily RNA polymerase sigma factor
145	 54.12	+1	185326..186975	-	549	34540025	pfk	PG0163	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
146	 52.06	0	187171..187485	-	104	34540026	-	PG0164	-	hypothetical protein
147	 52.74	0	187460..187897	-	145	34540027	hslR	PG0165	-	heat shock protein 15
148	 53.76	+1	187903..188460	-	185	34540028	pth	PG0166	-	peptidyl-tRNA hydrolase
149	 51.81	0	188602..189180	-	192	34540029	rplY	PG0167	-	50S ribosomal protein L25/general stress protein Ctc
150	 53.21	0	189792..191834	+	680	34540030	metG	PG0170	-	methionyl-tRNA synthetase
151	 51.78	0	191864..193636	+	590	34540031	-	PG0171	-	5'-nucleotidase family protein
152	 53.64	+1	193633..194415	+	260	34540032	-	PG0172	-	exonuclease
153	 49.72	0	194478..194831	-	117	34540033	-	PG0173	-	transcriptional regulator, putative
154	 49.80	0	194902..197718	-	938	34540034	-	PG0174	-	pyridine nucleotide-disulphide oxidoreductase family protein
155	 45.77	0	199227..200384	+	385	34540035	-	PG0177	-	ISPg4, transposase
156	 44.00	0	201923..202897	+	324	34540036	-	PG0179	-	hypothetical protein
157	 44.82	0	203195..204535	+	446	34540037	-	PG0180	-	putative lipoprotein
158	 47.11	0	204544..205545	+	333	34540038	-	PG0181	-	immunoreactive 32 kDa antigen PG49
159	 45.10	0	205692..209372	+	1226	34540039	-	PG0182	-	von Willebrand factor type A domain-containing protein
160	 46.38	0	209569..216183	+	2204	34540040	-	PG0183	-	putative lipoprotein
161	 48.16	0	216542..217627	+	361	34540041	-	PG0184	-	ISPg1, transposase
162	 42.67	-1	218469..221522	+	1017	34540042	ragA	PG0185	-	ragA protein
163	 42.43	-1	221552..223057	+	501	34540043	ragB	PG0186	-	lipoprotein RagB
164	 44.06	0	224074..225444	+	456	34540044	-	PG0188	-	putative lipoprotein
165	 46.75	0	225431..226138	+	235	34540045	-	PG0189	-	hypothetical protein
166	 50.33	0	226216..226980	+	254	34540046	uppS	PG0190	-	undecaprenyl diphosphate synthase
167	 44.39	0	226998..229673	+	891	34540047	-	PG0191	-	outer membrane protein, putative
168	 43.81	-1	229730..230254	+	174	34540048	ompH-1	PG0192	-	cationic outer membrane protein OmpH
169	 44.31	0	230289..230780	+	163	34540049	ompH-2	PG0193	-	cationic outer membrane protein OmpH
170	 41.09	-1	231068..231970	+	300	34540050	-	PG0194	-	ISPg3, transposase
171	 48.01	0	232186..232764	+	192	34540051	-	PG0195	-	rubrerythrin
172	 48.37	0	233043..235868	+	941	34540052	-	PG0196	-	M16 family peptidase
48.73	MEAN

4.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.