IslandPathversion 1.0

IslandPath Analysis: Porphyromonas gingivalis W83



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.73 STD DEV: 4.83
Porphyromonas gingivalis W83, complete genome - 1..2343476
1909 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1056	 56.20	+1	1301525..1303396	+	623	34540936	-	PG1225	-	ABC transporter, ATP-binding protein
1057	 55.32	+1	1303404..1304108	+	234	34540937	-	PG1226	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1058	 42.18	-1	1305649..1305942	-	97	34540938	-	PG1229	-	hypothetical protein
1059	 52.49	0	1306050..1308158	-	702	34540939	-	PG1230	-	hypothetical protein
1060	 50.90	0	1308364..1309701	-	445	34540940	gdh	PG1232	-	glutamate dehydrogenase
1061	 50.45	0	1310025..1310135	+	36	34540941	-	PG1233	-	hypothetical protein
1062	 40.31	-1	1310252..1310380	+	42	34540942	-	PG1234	-	hypothetical protein
1063	 48.17	0	1310390..1311346	-	318	34540943	-	PG1235	-	epimerase/reductase, putative
1064	 43.60	-1	1311662..1312372	+	236	34540944	-	PG1236	-	hypothetical protein
1065	 46.17	0	1312369..1312968	+	199	34540945	-	PG1237	-	LuxR family transcriptional regulator
1066	 51.27	0	1313713..1314459	-	248	34540946	fabG	PG1239	-	3-oxoacyl-(acyl-carrier-protein) reductase
1067	 47.62	0	1314543..1315151	-	202	34540947	-	PG1240	-	TetR family transcriptional regulator
1068	 50.62	0	1315753..1317540	+	595	34540948	lepA	PG1241	-	GTP-binding protein LepA
1069	 53.62	+1	1317575..1319161	+	528	34540949	dnaB	PG1242	-	replicative DNA helicase
1070	 48.62	0	1319674..1320759	+	361	34540950	-	PG1244	-	ISPg1, transposase
1071	 52.72	0	1321939..1324569	+	876	34540951	alaS	PG1246	-	alanyl-tRNA synthetase
1072	 49.81	0	1324584..1325645	+	353	34540952	aroB	PG1247	-	3-dehydroquinate synthase
1073	 51.50	0	1325891..1326622	-	243	34540953	-	PG1248	-	hypothetical protein
1074	 51.54	0	1326637..1327251	-	204	34540954	-	PG1249	-	1-acyl-sn-glycerol-3-phosphate acetyltransferase, putative
1075	 43.74	-1	1327274..1327936	-	220	34540955	-	PG1250	-	hypothetical protein
1076	 49.72	0	1327919..1328272	+	117	34540956	-	PG1251	-	hypothetical protein
1077	 50.00	0	1328439..1329674	-	411	34540957	-	PG1252	-	hypothetical protein
1078	 50.45	0	1329687..1331696	-	669	34540958	ligA	PG1253	-	DNA ligase, NAD-dependent
1079	 48.30	0	1331684..1332211	-	175	34540959	-	PG1254	-	acetyltransferase
1080	 47.76	0	1332218..1332841	-	207	34540960	recR	PG1255	-	recombination protein RecR
1081	 49.31	0	1332838..1334352	-	504	34540961	-	PG1256	-	ribonuclease
1082	 36.56	-2	1334551..1334643	-	30	34540962	-	PG1257	-	hypothetical protein
1083	 42.65	-1	1334674..1334952	-	92	34540963	hup-2	PG1258	-	DNA-binding protein HU
1084	 51.02	0	1335064..1335555	-	163	34540964	nrdG	PG1259	-	anaerobic ribonucleoside-triphosphate reductase activating protein
1085	 48.69	0	1335588..1337984	-	798	34540965	-	PG1260	-	anaerobic ribonucleoside triphosphate reductase
1086	 45.42	0	1338511..1339668	+	385	34540966	-	PG1261	-	ISPg4, transposase
1087	 40.86	-1	1339822..1340724	-	300	34540967	-	PG1262	-	ISPg3, transposase
1088	 44.23	0	1344830..1344985	-	51	34540968	-	PG1264	-	hypothetical protein
1089	 44.65	0	1345114..1345272	-	52	34540969	-	PG1265	-	hypothetical protein
1090	 43.84	-1	1346859..1347077	-	72	34540970	-	PG1266	-	hypothetical protein
1091	 45.24	0	1347106..1347273	+	55	34540971	-	PG1267	-	hypothetical protein
1092	 45.45	0	1347511..1347609	+	32	34540972	-	PG1268	-	hypothetical protein
1093	 51.47	0	1347660..1349291	-	543	34540973	pruA	PG1269	-	delta-1-pyrroline-5-carboxylate dehydrogenase
1094	 50.65	0	1349368..1350297	-	309	34540974	-	PG1270	-	hypothetical protein
1095	 50.81	0	1350304..1351533	-	409	34540975	-	PG1271	-	acetylornithine aminotransferase, putative
1096	 43.59	-1	1351772..1351927	-	51	34540976	-	PG1273	-	hypothetical protein
1097	 54.32	+1	1351983..1352549	+	188	34540977	efp-2	PG1274	-	elongation factor P
1098	 54.04	+1	1353085..1353591	+	168	34540978	-	PG1276	-	histone-like family DNA-binding protein
1099	 42.02	-1	1353894..1355159	+	421	34540979	-	PG1277	-	UDP-glucose-6 dehydrogenase, putative
1100	 47.37	0	1355492..1356574	+	360	34540980	serC	PG1278	-	phosphoserine aminotransferase
1101	 46.69	0	1356675..1357595	+	306	34540981	-	PG1279	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1102	 48.24	0	1357614..1358861	+	415	34540982	-	PG1280	-	hypothetical protein
1103	 45.62	0	1358988..1360151	+	387	34540983	-	PG1281	-	hypothetical protein
1104	 46.93	0	1360175..1360630	+	151	34540984	-	PG1282	-	hypothetical protein
1105	 50.58	0	1360693..1362855	+	720	34540985	-	PG1283	-	hypothetical protein
1106	 52.79	0	1363034..1365001	+	655	34540986	-	PG1285	-	glucosamine-6-phosphate deaminase-like protein
1107	 49.48	0	1365109..1365591	-	160	34540987	ftn	PG1286	-	ferritin
1108	 53.31	0	1366103..1367188	+	361	34540988	gmd	PG1288	-	GDP-mannose 4,6-dehydratase
1109	 52.51	0	1367181..1368254	+	357	34540989	fcl	PG1289	-	GDP-fucose synthetase
1110	 51.57	0	1368393..1369412	+	339	34540990	ilvE	PG1290	-	branched-chain amino acid aminotransferase
1111	 45.60	0	1369541..1371268	-	575	34540991	-	PG1291	-	hypothetical protein
1112	 49.98	0	1372187..1374721	+	844	34540992	feoB-2	PG1294	-	ferrous iron transport protein B
1113	 46.71	0	1374934..1375389	+	151	34540993	-	PG1296	-	hypothetical protein
1114	 48.94	0	1375971..1377770	+	599	34540994	rpsA	PG1297	-	30S ribosomal protein S1
1115	 46.48	0	1378620..1379159	-	179	34540995	-	PG1300	-	hypothetical protein
1116	 49.88	0	1379196..1380011	-	271	34540996	-	PG1301	-	hypothetical protein
1117	 47.07	0	1380029..1380727	-	232	34540997	-	PG1302	-	hypothetical protein
1118	 50.07	0	1380792..1382207	+	471	34540998	-	PG1303	-	helicase, putative
1119	 48.25	0	1382224..1383564	-	446	34540999	-	PG1304	-	hypothetical protein
1120	 53.38	0	1383761..1386628	-	955	34541000	gcvP	PG1305	-	glycine dehydrogenase
1121	 53.02	0	1386633..1387277	-	214	34541001	-	PG1306	-	metallo-beta-lactamase family protein
1122	 50.30	0	1387274..1387939	-	221	34541002	gidB	PG1307	-	glucose-inhibited division protein B
1123	 47.52	0	1387973..1388818	-	281	34541003	-	PG1308	-	hypothetical protein
1124	 50.83	0	1389224..1389886	+	220	34541004	-	PG1310	-	exsB protein
1125	 49.21	0	1389849..1390415	+	188	34541005	-	PG1311	-	hypothetical protein
1126	 48.48	0	1390426..1391613	+	395	34541006	-	PG1312	-	capA protein, putative
1127	 48.64	0	1392422..1394080	+	552	34541007	-	PG1313	-	dipeptidase-related protein
1128	 50.68	0	1394452..1395558	-	368	34541008	aroC	PG1314	-	chorismate synthase
1129	 49.39	0	1395708..1396280	-	190	34541009	slyD	PG1315	-	peptidyl-prolyl cis-trans isomerase SlyD, FKBP-type
1130	 47.46	0	1396331..1396861	-	176	34541010	-	PG1316	-	hypothetical protein
1131	 49.39	0	1396834..1397244	-	136	34541011	-	PG1317	-	hypothetical protein
1132	 47.62	0	1397292..1397858	-	188	34541012	-	PG1318	-	ECF subfamily RNA polymerase sigma factor
1133	 47.96	0	1398892..1399527	+	211	34541013	-	PG1320	-	ISPg1, transposase, internal deletion
1134	 50.42	0	1399746..1401413	-	555	34541014	fhs	PG1321	-	formate--tetrahydrofolate ligase
1135	 48.24	0	1401570..1402904	+	444	34541015	-	PG1323	-	PhoH family protein
1136	 51.58	0	1402952..1403521	-	189	34541016	ruvC	PG1324	-	Holliday junction resolvase
1137	 46.40	0	1403594..1403968	-	124	34541017	-	PG1325	-	hypothetical protein
1138	 44.76	0	1404173..1405231	+	352	34541018	-	PG1326	-	hemagglutinin, putative
1139	 50.42	0	1405360..1406670	-	436	34541019	-	PG1327	-	aminotransferase, putative
1140	 51.80	0	1406713..1408770	-	685	34541020	-	PG1328	-	CoA ligase family protein
1141	 48.33	0	1409806..1410225	+	139	34541021	mscL	PG1330	-	large conductance mechanosensitive channel protein
1142	 53.14	0	1412182..1414170	+	662	34541022	pntB	PG1332	-	NAD(P) transhydrogenase, beta subunit
1143	 51.58	0	1414316..1415515	-	399	34541023	-	PG1333	-	hypothetical protein
1144	 52.50	0	1415512..1416492	-	326	34541024	-	PG1334	-	band 7/Mec-2 family protein
1145	 50.75	0	1416520..1416984	-	154	34541025	-	PG1335	-	hypothetical protein
1146	 44.84	0	1417953..1418378	+	141	34541026	umuD	PG1337	-	umuD protein
1147	 50.12	0	1418386..1419684	+	432	34541027	umuC	PG1338	-	umuC protein
1148	 49.45	0	1420388..1421938	-	516	34541028	-	PG1340	-	L-lactate permease
1149	 47.57	0	1422171..1422725	+	184	34541029	-	PG1341	-	hypothetical protein
1150	 48.97	0	1422725..1423741	+	338	34541030	murB	PG1342	-	UDP-N-acetylenolpyruvoylglucosamine reductase
1151	 49.43	0	1423768..1425246	+	492	34541031	lipB	PG1343	-	lipoate-protein ligase B
1152	 51.52	0	1425730..1426851	+	373	34541032	-	PG1345	-	glycosyl transferase, group 1 family protein
1153	 50.63	0	1426848..1428119	+	423	34541033	-	PG1346	-	glycosyl transferase, group 1 family protein
1154	 48.39	0	1428256..1428720	+	154	34541034	-	PG1347	-	7-cyano-7-deazaguanine reductase
1155	 50.23	0	1428748..1429629	+	293	34541035	-	PG1348	-	hypothetical protein
48.73	MEAN

4.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.