IslandPath Analysis: Porphyromonas gingivalis W83



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.73   STD DEV: 4.83
Porphyromonas gingivalis W83, complete genome - 1..2343476
1909 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1018	 49.25	0	1256013..1257734	-	573	34540898	-	PG1176	-	ABC transporter, ATP-binding protein, putative
1019	 48.16	0	1257884..1258969	-	361	34540899	-	PG1177	-	ISPg1, transposase
1020	 50.31	0	1259150..1260427	-	425	34540900	-	PG1178	-	hypothetical protein
1021	 49.24	0	1260431..1261222	-	263	34540901	-	PG1179	-	hypothetical protein
1022	 49.79	0	1261300..1263705	-	801	34540902	-	PG1180	-	hypothetical protein
1023	 50.33	0	1263746..1264345	-	199	34540903	-	PG1181	-	TetR family transcriptional regulator
1024	 48.70	0	1265425..1266960	-	511	34540904	-	PG1184	-	alginate O-acetyltransferase, putative
1025	 49.13	0	1266982..1267842	-	286	34540905	-	PG1185	-	hypothetical protein
1026	 49.00	0	1267793..1269241	-	482	34540906	-	PG1186	-	hypothetical protein
1027	 48.11	0	1270132..1272012	+	626	34540907	-	PG1189	-	hypothetical protein
1028	 49.79	0	1272252..1273205	+	317	34540908	hprA	PG1190	-	glycerate dehydrogenase
1029	 49.26	0	1274119..1275267	+	382	34540909	bioF-2	PG1195	-	8-amino-7-oxononanoate synthase
1030	 45.10	0	1275267..1275419	+	50	34540910	-	PG1196	-	hypothetical protein
1031	 48.16	0	1275565..1276650	-	361	34540911	-	PG1197	-	ISPg1, transposase
1032	 47.50	0	1276790..1277029	+	79	34540912	-	PG1198	-	hypothetical protein
1033	 43.43	-1	1277033..1277458	+	141	34540913	-	PG1199	-	hypothetical protein
1034	 39.96	-1	1277570..1278082	-	170	34540914	-	PG1200	-	hypothetical protein
1035	 30.12	-2	1279682..1283104	-	1140	34540915	-	PG1202	-	hypothetical protein
1036	 42.86	-1	1283327..1283536	-	69	34540916	-	PG1203	-	transcriptional regulator, putative
1037	 45.65	0	1284093..1284563	+	156	34540917	-	PG1205	-	histone-like family DNA-binding protein
1038	 40.09	-1	1284649..1284870	-	73	34540918	-	PG1206	-	hypothetical protein
1039	 38.99	-2	1284863..1285021	-	52	34540919	-	PG1207	-	hypothetical protein
1040	 52.26	0	1285083..1287005	-	640	34540920	dnaK	PG1208	-	molecular chaperone DnaK
1041	 47.00	0	1287585..1289135	+	516	34540921	-	PG1209	-	hypothetical protein
1042	 49.55	0	1289184..1290971	+	595	34540922	-	PG1210	-	M24 family peptidase
1043	 46.29	0	1290941..1291519	+	192	34540923	-	PG1211	-	hexapeptide transferase family protein
1044	 48.13	0	1291532..1292545	+	337	34540924	-	PG1212	-	TPR domain-containing protein
1045	 49.77	0	1292573..1293223	+	216	34540925	rnhA	PG1213	-	ribonuclease H
1046	 52.14	0	1293172..1294410	+	412	34540926	-	PG1214	-	hypothetical protein
1047	 48.09	0	1294761..1295573	+	270	34540927	-	PG1215	-	lipoprotein protein, putative
1048	 45.51	0	1295570..1295725	+	51	34540928	-	PG1216	-	hypothetical protein
1049	 48.05	0	1295715..1296047	+	110	34540929	-	PG1217	-	hypothetical protein
1050	 48.15	0	1296077..1296535	+	152	34540930	-	PG1218	-	hypothetical protein
1051	 47.76	0	1296811..1297122	+	103	34540931	-	PG1219	-	hypothetical protein
1052	 53.70	+1	1297126..1298259	+	377	34540932	-	PG1220	-	erythronate-4-phosphate dehydrogenase
1053	 50.83	0	1298269..1298994	+	241	34540933	-	PG1221	-	short chain dehydrogenase/reductase family oxidoreductase
1054	 39.94	-1	1299165..1299482	-	105	34540934	-	PG1222	-	hypothetical protein
1055	 45.59	0	1299601..1299804	+	67	34540935	-	PG1223	-	hypothetical protein
1056	 56.20	+1	1301525..1303396	+	623	34540936	-	PG1225	-	ABC transporter, ATP-binding protein
1057	 55.32	+1	1303404..1304108	+	234	34540937	-	PG1226	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1058	 42.18	-1	1305649..1305942	-	97	34540938	-	PG1229	-	hypothetical protein
1059	 52.49	0	1306050..1308158	-	702	34540939	-	PG1230	-	hypothetical protein
1060	 50.90	0	1308364..1309701	-	445	34540940	gdh	PG1232	-	glutamate dehydrogenase
1061	 50.45	0	1310025..1310135	+	36	34540941	-	PG1233	-	hypothetical protein
1062	 40.31	-1	1310252..1310380	+	42	34540942	-	PG1234	-	hypothetical protein
1063	 48.17	0	1310390..1311346	-	318	34540943	-	PG1235	-	epimerase/reductase, putative
1064	 43.60	-1	1311662..1312372	+	236	34540944	-	PG1236	-	hypothetical protein
1065	 46.17	0	1312369..1312968	+	199	34540945	-	PG1237	-	LuxR family transcriptional regulator
1066	 51.27	0	1313713..1314459	-	248	34540946	fabG	PG1239	-	3-oxoacyl-(acyl-carrier-protein) reductase
1067	 47.62	0	1314543..1315151	-	202	34540947	-	PG1240	-	TetR family transcriptional regulator
1068	 50.62	0	1315753..1317540	+	595	34540948	lepA	PG1241	-	GTP-binding protein LepA
1069	 53.62	+1	1317575..1319161	+	528	34540949	dnaB	PG1242	-	replicative DNA helicase
1070	 48.62	0	1319674..1320759	+	361	34540950	-	PG1244	-	ISPg1, transposase
1071	 52.72	0	1321939..1324569	+	876	34540951	alaS	PG1246	-	alanyl-tRNA synthetase
1072	 49.81	0	1324584..1325645	+	353	34540952	aroB	PG1247	-	3-dehydroquinate synthase
1073	 51.50	0	1325891..1326622	-	243	34540953	-	PG1248	-	hypothetical protein
1074	 51.54	0	1326637..1327251	-	204	34540954	-	PG1249	-	1-acyl-sn-glycerol-3-phosphate acetyltransferase, putative
1075	 43.74	-1	1327274..1327936	-	220	34540955	-	PG1250	-	hypothetical protein
1076	 49.72	0	1327919..1328272	+	117	34540956	-	PG1251	-	hypothetical protein
1077	 50.00	0	1328439..1329674	-	411	34540957	-	PG1252	-	hypothetical protein
1078	 50.45	0	1329687..1331696	-	669	34540958	ligA	PG1253	-	DNA ligase, NAD-dependent
1079	 48.30	0	1331684..1332211	-	175	34540959	-	PG1254	-	acetyltransferase
1080	 47.76	0	1332218..1332841	-	207	34540960	recR	PG1255	-	recombination protein RecR
1081	 49.31	0	1332838..1334352	-	504	34540961	-	PG1256	-	ribonuclease
1082	 36.56	-2	1334551..1334643	-	30	34540962	-	PG1257	-	hypothetical protein
1083	 42.65	-1	1334674..1334952	-	92	34540963	hup-2	PG1258	-	DNA-binding protein HU
1084	 51.02	0	1335064..1335555	-	163	34540964	nrdG	PG1259	-	anaerobic ribonucleoside-triphosphate reductase activating protein
1085	 48.69	0	1335588..1337984	-	798	34540965	-	PG1260	-	anaerobic ribonucleoside triphosphate reductase
1086	 45.42	0	1338511..1339668	+	385	34540966	-	PG1261	-	ISPg4, transposase
1087	 40.86	-1	1339822..1340724	-	300	34540967	-	PG1262	-	ISPg3, transposase
1088	 44.23	0	1344830..1344985	-	51	34540968	-	PG1264	-	hypothetical protein
1089	 44.65	0	1345114..1345272	-	52	34540969	-	PG1265	-	hypothetical protein
1090	 43.84	-1	1346859..1347077	-	72	34540970	-	PG1266	-	hypothetical protein
1091	 45.24	0	1347106..1347273	+	55	34540971	-	PG1267	-	hypothetical protein
1092	 45.45	0	1347511..1347609	+	32	34540972	-	PG1268	-	hypothetical protein
1093	 51.47	0	1347660..1349291	-	543	34540973	pruA	PG1269	-	delta-1-pyrroline-5-carboxylate dehydrogenase
1094	 50.65	0	1349368..1350297	-	309	34540974	-	PG1270	-	hypothetical protein
1095	 50.81	0	1350304..1351533	-	409	34540975	-	PG1271	-	acetylornithine aminotransferase, putative
1096	 43.59	-1	1351772..1351927	-	51	34540976	-	PG1273	-	hypothetical protein
1097	 54.32	+1	1351983..1352549	+	188	34540977	efp-2	PG1274	-	elongation factor P
1098	 54.04	+1	1353085..1353591	+	168	34540978	-	PG1276	-	histone-like family DNA-binding protein
1099	 42.02	-1	1353894..1355159	+	421	34540979	-	PG1277	-	UDP-glucose-6 dehydrogenase, putative
1100	 47.37	0	1355492..1356574	+	360	34540980	serC	PG1278	-	phosphoserine aminotransferase
1101	 46.69	0	1356675..1357595	+	306	34540981	-	PG1279	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
1102	 48.24	0	1357614..1358861	+	415	34540982	-	PG1280	-	hypothetical protein
1103	 45.62	0	1358988..1360151	+	387	34540983	-	PG1281	-	hypothetical protein
1104	 46.93	0	1360175..1360630	+	151	34540984	-	PG1282	-	hypothetical protein
1105	 50.58	0	1360693..1362855	+	720	34540985	-	PG1283	-	hypothetical protein
1106	 52.79	0	1363034..1365001	+	655	34540986	-	PG1285	-	glucosamine-6-phosphate deaminase-like protein
1107	 49.48	0	1365109..1365591	-	160	34540987	ftn	PG1286	-	ferritin
1108	 53.31	0	1366103..1367188	+	361	34540988	gmd	PG1288	-	GDP-mannose 4,6-dehydratase
1109	 52.51	0	1367181..1368254	+	357	34540989	fcl	PG1289	-	GDP-fucose synthetase
1110	 51.57	0	1368393..1369412	+	339	34540990	ilvE	PG1290	-	branched-chain amino acid aminotransferase
1111	 45.60	0	1369541..1371268	-	575	34540991	-	PG1291	-	hypothetical protein
1112	 49.98	0	1372187..1374721	+	844	34540992	feoB-2	PG1294	-	ferrous iron transport protein B
1113	 46.71	0	1374934..1375389	+	151	34540993	-	PG1296	-	hypothetical protein
1114	 48.94	0	1375971..1377770	+	599	34540994	rpsA	PG1297	-	30S ribosomal protein S1
1115	 46.48	0	1378620..1379159	-	179	34540995	-	PG1300	-	hypothetical protein
1116	 49.88	0	1379196..1380011	-	271	34540996	-	PG1301	-	hypothetical protein
1117	 47.07	0	1380029..1380727	-	232	34540997	-	PG1302	-	hypothetical protein
48.73	MEAN

4.83	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.