IslandPathversion 1.0

IslandPath Analysis: Porphyromonas gingivalis W83



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 48.73 STD DEV: 4.83
Porphyromonas gingivalis W83, complete genome - 1..2343476
1909 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
984	 41.95	-1	1216000..1216614	+	204	34540864	-	PG1135	-	sugar transferase
985	 47.33	0	1216789..1218417	-	542	34540865	-	PG1136	-	hypothetical protein
986	 46.10	0	1218380..1219687	-	435	34540866	porS	PG1137	-	porS protein
987	 44.76	0	1219684..1220838	-	384	34540867	porR	PG1138	-	pigmentation and extracellular proteinase regulator
988	 42.39	-1	1221018..1222154	-	378	34540868	-	PG1139	-	hypothetical protein
989	 42.16	-1	1222265..1223125	-	286	34540869	-	PG1140	-	glycosyl transferase, group 2 family protein
990	 41.71	-1	1223131..1224324	-	397	34540870	-	PG1141	-	glycosyl transferase, group 1 family protein
991	 36.30	-2	1224661..1225569	-	302	34540871	-	PG1142	-	exopolysaccharide synthesis-related protein
992	 48.57	0	1225720..1227288	-	522	34540872	-	PG1143	-	sugar dehydrogenase
993	 50.93	0	1228572..1230395	-	607	34540873	-	PG1145	-	long-chain-fatty-acid--CoA ligase, putative
994	 37.63	-2	1231344..1231436	+	30	34540874	-	PG1148	-	hypothetical protein
995	 41.05	-1	1231782..1232909	+	375	34540875	-	PG1149	-	glycosyl transferase, group 1 family protein
996	 36.74	-2	1233046..1233309	+	87	34540876	-	PG1150	-	hypothetical protein
997	 51.35	0	1233290..1234438	+	382	34540877	-	PG1151	-	alcohol dehydrogenase, iron-containing
998	 42.49	-1	1234764..1235036	-	90	34540878	-	PG1152	-	hypothetical protein
999	 46.50	0	1235066..1235779	-	237	34540879	-	PG1153	-	hypothetical protein
1000	 48.84	0	1235787..1235915	-	42	34540880	-	PG1154	-	hypothetical protein
1001	 48.48	0	1236001..1236891	+	296	34540881	-	PG1155	-	ADP-heptose--LPS heptosyltransferase, putative
1002	 46.14	0	1236875..1237327	+	150	34540882	-	PG1156	-	S4 domain-containing protein
1003	 47.18	0	1238047..1239057	-	336	34540883	cbiB	PG1159	-	cobalamin biosynthesis protein CbiB
1004	 50.69	0	1239071..1240078	-	335	34540884	-	PG1160	-	L-threonine-O-3-phosphate decarboxylase, putative
1005	 52.91	0	1241563..1242129	-	188	34540885	-	PG1162	-	ATP:cob(I)alamin adenosyltransferase, putative
1006	 53.11	0	1242152..1243471	-	439	34540886	cbiA	PG1163	-	cobyrinic acid a,c-diamide synthase
1007	 49.21	0	1244197..1247604	-	1135	34540887	-	PG1164	-	hypothetical protein
1008	 41.70	-1	1247601..1248317	-	238	34540888	-	PG1165	-	hypothetical protein
1009	 42.36	-1	1248390..1248533	-	47	34540889	-	PG1166	-	hypothetical protein
1010	 39.13	-1	1248567..1248704	+	45	34540890	-	PG1167	-	hypothetical protein
1011	 41.41	-1	1249173..1249271	-	32	34540891	-	PG1169	-	hypothetical protein
1012	 53.15	0	1249303..1250175	+	290	34540892	-	PG1170	-	SerB family protein
1013	 51.96	0	1250495..1251235	+	246	34540893	-	PG1171	-	oxidoreductase, putative
1014	 51.83	0	1251313..1252599	+	428	34540894	-	PG1172	-	iron-sulfur cluster binding protein, putative
1015	 48.62	0	1252575..1253189	+	204	34540895	-	PG1173	-	YkgG family protein
1016	 51.81	0	1253300..1253797	-	165	34540896	-	PG1174	-	thioesterase family protein
1017	 45.99	0	1254260..1255966	-	568	34540897	-	PG1175	-	ABC transporter, ATP-binding protein, putative
1018	 49.25	0	1256013..1257734	-	573	34540898	-	PG1176	-	ABC transporter, ATP-binding protein, putative
1019	 48.16	0	1257884..1258969	-	361	34540899	-	PG1177	-	ISPg1, transposase
1020	 50.31	0	1259150..1260427	-	425	34540900	-	PG1178	-	hypothetical protein
1021	 49.24	0	1260431..1261222	-	263	34540901	-	PG1179	-	hypothetical protein
1022	 49.79	0	1261300..1263705	-	801	34540902	-	PG1180	-	hypothetical protein
1023	 50.33	0	1263746..1264345	-	199	34540903	-	PG1181	-	TetR family transcriptional regulator
1024	 48.70	0	1265425..1266960	-	511	34540904	-	PG1184	-	alginate O-acetyltransferase, putative
1025	 49.13	0	1266982..1267842	-	286	34540905	-	PG1185	-	hypothetical protein
1026	 49.00	0	1267793..1269241	-	482	34540906	-	PG1186	-	hypothetical protein
1027	 48.11	0	1270132..1272012	+	626	34540907	-	PG1189	-	hypothetical protein
1028	 49.79	0	1272252..1273205	+	317	34540908	hprA	PG1190	-	glycerate dehydrogenase
1029	 49.26	0	1274119..1275267	+	382	34540909	bioF-2	PG1195	-	8-amino-7-oxononanoate synthase
1030	 45.10	0	1275267..1275419	+	50	34540910	-	PG1196	-	hypothetical protein
1031	 48.16	0	1275565..1276650	-	361	34540911	-	PG1197	-	ISPg1, transposase
1032	 47.50	0	1276790..1277029	+	79	34540912	-	PG1198	-	hypothetical protein
1033	 43.43	-1	1277033..1277458	+	141	34540913	-	PG1199	-	hypothetical protein
1034	 39.96	-1	1277570..1278082	-	170	34540914	-	PG1200	-	hypothetical protein
1035	 30.12	-2	1279682..1283104	-	1140	34540915	-	PG1202	-	hypothetical protein
1036	 42.86	-1	1283327..1283536	-	69	34540916	-	PG1203	-	transcriptional regulator, putative
1037	 45.65	0	1284093..1284563	+	156	34540917	-	PG1205	-	histone-like family DNA-binding protein
1038	 40.09	-1	1284649..1284870	-	73	34540918	-	PG1206	-	hypothetical protein
1039	 38.99	-2	1284863..1285021	-	52	34540919	-	PG1207	-	hypothetical protein
1040	 52.26	0	1285083..1287005	-	640	34540920	dnaK	PG1208	-	molecular chaperone DnaK
1041	 47.00	0	1287585..1289135	+	516	34540921	-	PG1209	-	hypothetical protein
1042	 49.55	0	1289184..1290971	+	595	34540922	-	PG1210	-	M24 family peptidase
1043	 46.29	0	1290941..1291519	+	192	34540923	-	PG1211	-	hexapeptide transferase family protein
1044	 48.13	0	1291532..1292545	+	337	34540924	-	PG1212	-	TPR domain-containing protein
1045	 49.77	0	1292573..1293223	+	216	34540925	rnhA	PG1213	-	ribonuclease H
1046	 52.14	0	1293172..1294410	+	412	34540926	-	PG1214	-	hypothetical protein
1047	 48.09	0	1294761..1295573	+	270	34540927	-	PG1215	-	lipoprotein protein, putative
1048	 45.51	0	1295570..1295725	+	51	34540928	-	PG1216	-	hypothetical protein
1049	 48.05	0	1295715..1296047	+	110	34540929	-	PG1217	-	hypothetical protein
1050	 48.15	0	1296077..1296535	+	152	34540930	-	PG1218	-	hypothetical protein
1051	 47.76	0	1296811..1297122	+	103	34540931	-	PG1219	-	hypothetical protein
1052	 53.70	+1	1297126..1298259	+	377	34540932	-	PG1220	-	erythronate-4-phosphate dehydrogenase
1053	 50.83	0	1298269..1298994	+	241	34540933	-	PG1221	-	short chain dehydrogenase/reductase family oxidoreductase
1054	 39.94	-1	1299165..1299482	-	105	34540934	-	PG1222	-	hypothetical protein
1055	 45.59	0	1299601..1299804	+	67	34540935	-	PG1223	-	hypothetical protein
1056	 56.20	+1	1301525..1303396	+	623	34540936	-	PG1225	-	ABC transporter, ATP-binding protein
1057	 55.32	+1	1303404..1304108	+	234	34540937	-	PG1226	-	peptidyl-prolyl cis-trans isomerase, cyclophilin-type
1058	 42.18	-1	1305649..1305942	-	97	34540938	-	PG1229	-	hypothetical protein
1059	 52.49	0	1306050..1308158	-	702	34540939	-	PG1230	-	hypothetical protein
1060	 50.90	0	1308364..1309701	-	445	34540940	gdh	PG1232	-	glutamate dehydrogenase
1061	 50.45	0	1310025..1310135	+	36	34540941	-	PG1233	-	hypothetical protein
1062	 40.31	-1	1310252..1310380	+	42	34540942	-	PG1234	-	hypothetical protein
1063	 48.17	0	1310390..1311346	-	318	34540943	-	PG1235	-	epimerase/reductase, putative
1064	 43.60	-1	1311662..1312372	+	236	34540944	-	PG1236	-	hypothetical protein
1065	 46.17	0	1312369..1312968	+	199	34540945	-	PG1237	-	LuxR family transcriptional regulator
1066	 51.27	0	1313713..1314459	-	248	34540946	fabG	PG1239	-	3-oxoacyl-(acyl-carrier-protein) reductase
1067	 47.62	0	1314543..1315151	-	202	34540947	-	PG1240	-	TetR family transcriptional regulator
1068	 50.62	0	1315753..1317540	+	595	34540948	lepA	PG1241	-	GTP-binding protein LepA
1069	 53.62	+1	1317575..1319161	+	528	34540949	dnaB	PG1242	-	replicative DNA helicase
1070	 48.62	0	1319674..1320759	+	361	34540950	-	PG1244	-	ISPg1, transposase
1071	 52.72	0	1321939..1324569	+	876	34540951	alaS	PG1246	-	alanyl-tRNA synthetase
1072	 49.81	0	1324584..1325645	+	353	34540952	aroB	PG1247	-	3-dehydroquinate synthase
1073	 51.50	0	1325891..1326622	-	243	34540953	-	PG1248	-	hypothetical protein
1074	 51.54	0	1326637..1327251	-	204	34540954	-	PG1249	-	1-acyl-sn-glycerol-3-phosphate acetyltransferase, putative
1075	 43.74	-1	1327274..1327936	-	220	34540955	-	PG1250	-	hypothetical protein
1076	 49.72	0	1327919..1328272	+	117	34540956	-	PG1251	-	hypothetical protein
1077	 50.00	0	1328439..1329674	-	411	34540957	-	PG1252	-	hypothetical protein
1078	 50.45	0	1329687..1331696	-	669	34540958	ligA	PG1253	-	DNA ligase, NAD-dependent
1079	 48.30	0	1331684..1332211	-	175	34540959	-	PG1254	-	acetyltransferase
1080	 47.76	0	1332218..1332841	-	207	34540960	recR	PG1255	-	recombination protein RecR
1081	 49.31	0	1332838..1334352	-	504	34540961	-	PG1256	-	ribonuclease
1082	 36.56	-2	1334551..1334643	-	30	34540962	-	PG1257	-	hypothetical protein
1083	 42.65	-1	1334674..1334952	-	92	34540963	hup-2	PG1258	-	DNA-binding protein HU
48.73	MEAN

4.83	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.