IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
883	 41.01	0	1038344..1038721	+	125	15602748	-	PM0883	-	hypothetical protein
884	 42.70	0	1039136..1040566	-	476	15602749	rfaE	PM0884	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
885	 42.68	0	1040790..1041731	+	313	15602750	-	PM0885	-	lipid A biosynthesis lauroyl acyltransferase
886	 40.80	0	1041830..1042405	-	191	15602751	-	PM0886	-	hypothetical protein
887	 39.19	0	1042395..1043009	-	204	15602752	-	PM0887	-	hypothetical protein
888	 42.00	0	1043015..1043464	-	149	15602753	-	PM0888	-	hypothetical protein
889	 41.23	0	1043485..1044408	-	307	15602754	-	PM0889	-	hypothetical protein
890	 40.22	0	1044453..1045904	-	483	15602755	modF	PM0890	-	putative molybdenum transport ATP-binding protein ModF
891	 40.10	0	1045965..1047206	-	413	15602756	-	PM0891	-	serine/threonine transporter SstT
892	 36.22	-1	1047578..1048027	+	149	15602757	impA	PM0892	-	ImpA
893	 43.06	0	1048135..1049553	-	472	15602758	lpdA	PM0893	-	dihydrolipoamide dehydrogenase
894	 45.50	+1	1049678..1051576	-	632	15602759	aceF	PM0894	-	dihydrolipoamide acetyltransferase
895	 41.89	0	1051649..1054312	-	887	15602760	aceE	PM0895	-	pyruvate dehydrogenase subunit E1
896	 37.72	0	1055015..1055515	-	166	15602761	crr	PM0896	-	glucose-specific PTS system component
897	 38.89	0	1055574..1057301	-	575	15602762	ptsI	PM0897	-	phosphoenolpyruvate-protein phosphotransferase
898	 42.25	0	1057387..1057644	-	85	15602763	ptsH	PM0898	-	PtsH
899	 41.98	0	1057875..1058927	-	350	15602764	-	PM0899	-	ribosome-associated GTPase
900	 36.94	-1	1059010..1059564	+	184	15602765	-	PM0900	-	oligoribonuclease
901	 43.81	0	1059689..1060003	+	104	15602766	-	PM0901	-	hypothetical protein
902	 38.35	0	1060123..1060620	+	165	15602767	-	PM0902	-	hypothetical protein
903	 41.38	0	1060625..1061854	+	409	15602768	-	PM0903	-	hypothetical protein
904	 42.34	0	1061860..1063713	+	617	15602769	mutL	PM0904	-	DNA mismatch repair protein
905	 43.58	0	1063595..1064668	+	357	15602770	miaA	PM0905	-	tRNA delta(2)-isopentenylpyrophosphate transferase
906	 34.36	-1	1064798..1065088	+	96	15602771	hfq	PM0906	-	RNA-binding protein Hfq
907	 41.20	0	1065096..1066442	+	448	15602772	hflX	PM0907	-	hypothetical protein
908	 41.93	0	1066491..1067444	-	317	15602773	tyrR	PM0908	-	hypothetical protein
909	 41.41	0	1067531..1068607	-	358	15602774	-	PM0909	-	hypothetical protein
910	 41.51	0	1068625..1070031	-	468	15602775	-	PM0910	-	hypothetical protein
911	 38.89	0	1070200..1071891	+	563	15602776	sapA	PM0911	-	SapA
912	 40.06	0	1071888..1072853	+	321	15602777	sapB	PM0912	-	hypothetical protein
913	 38.85	0	1072843..1073730	+	295	15602778	sapC	PM0913	-	SapC
914	 39.14	0	1073738..1074787	+	349	15602779	sapD	PM0914	-	SapD
915	 38.97	0	1074800..1075597	+	265	15602780	sapF	PM0915	-	SapF
916	 36.47	-1	1075600..1076397	-	265	15602781	-	PM0916	-	hypothetical protein
917	 37.16	-1	1082228..1083037	-	269	15602782	murI	PM0917	-	glutamate racemase
918	 39.18	0	1083034..1083546	-	170	15602783	-	PM0918	-	hypothetical protein
919	 42.89	0	1083539..1085620	-	693	15602784	recG	PM0919	-	hypothetical protein
920	 40.21	0	1085617..1087740	-	707	15602785	spoT	PM0920	-	hypothetical protein
921	 38.89	0	1087801..1088070	-	89	15602786	rpoZ	PM0921	-	DNA-directed RNA polymerase subunit omega
922	 37.96	0	1088137..1088763	-	208	15602787	gmk	PM0922	-	guanylate kinase
923	 42.24	0	1088861..1089253	-	130	15602788	-	PM0923	-	methionine sulfoxide reductase B
924	 40.90	0	1089501..1090505	+	334	15602789	gapdH	PM0924	-	glyceraldehyde-3-phosphate dehydrogenase
925	 38.93	0	1091068..1092888	+	606	15602790	fadD_2	PM0925	-	FadD
926	 41.24	0	1092953..1094053	-	366	15602791	znuA	PM0926	-	high-affinity zinc transporter periplasmic component
927	 40.67	0	1094200..1094976	-	258	15602792	-	PM0927	-	hypothetical protein
928	 41.69	0	1094961..1096085	-	374	15602793	mltA	PM0928	-	murein transglycosylase A
929	 42.43	0	1096528..1097901	-	457	15602794	-	PM0929	-	hypothetical protein
930	 41.22	0	1098047..1099048	+	333	15602795	fbp	PM0930	-	fructose-1,6-bisphosphatase
931	 35.16	-1	1099184..1099675	+	163	15602796	-	PM0931	-	hypothetical protein
932	 41.75	0	1099957..1101096	+	379	15602797	-	PM0932	-	hypothetical protein
933	 42.84	0	1101090..1102478	+	462	15602798	-	PM0933	-	hypothetical protein
934	 38.37	0	1102562..1103434	-	290	15602799	-	PM0934	-	hypothetical protein
935	 42.73	0	1103509..1104189	+	226	15602800	-	PM0935	-	hypothetical protein
936	 43.71	0	1104203..1105465	+	420	15602801	proA	PM0936	-	gamma-glutamyl phosphate reductase
937	 43.16	0	1105600..1106952	+	450	15602802	-	PM0937	-	aspartate kinase III
938	 43.34	0	1107132..1108430	+	432	15602803	purA	PM0938	-	adenylosuccinate synthetase
939	 41.44	0	1108621..1110027	+	468	15602804	-	PM0939	-	hypothetical protein
940	 41.41	0	1110332..1112473	+	713	15602805	nrdD	PM0940	-	anaerobic ribonucleoside triphosphate reductase
941	 41.51	0	1112545..1113021	+	158	15602806	nrdG	PM0941	-	anaerobic ribonucleotide reductase-activating protein
942	 40.53	0	1113327..1114118	-	263	15602807	-	PM0942	-	hypothetical protein
943	 40.40	0	1114225..1114776	-	183	15602808	-	PM0943	-	hypothetical protein
944	 39.41	0	1114825..1115334	-	169	15602809	ppiB	PM0944	-	PpiB
945	 40.36	0	1115472..1116851	+	459	15602810	cysS	PM0945	-	cysteinyl-tRNA synthetase
946	 45.64	+1	1116902..1117543	-	213	15602811	-	PM0946	-	hypothetical protein
947	 44.49	+1	1117632..1118294	-	220	15602812	eda	PM0947	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
948	 40.94	0	1118316..1120025	-	569	15602813	-	PM0948	-	putative sulfate transporter YchM
949	 40.33	0	1120303..1121517	-	404	15602814	-	PM0949	-	sugar efflux transporter
950	 39.01	0	1121521..1122735	-	404	15602815	-	PM0950	-	hypothetical protein
951	 41.37	0	1122737..1123321	-	194	15602816	dcd	PM0951	-	deoxycytidine triphosphate deaminase
952	 38.25	0	1123338..1123988	-	216	15602817	udk	PM0952	-	uridine kinase
953	 41.23	0	1124243..1125280	+	345	15602818	afuA_1	PM0953	-	AfuA
954	 41.35	0	1125304..1126326	+	340	15602819	afuA_2	PM0954	-	AfuA
955	 41.93	0	1126339..1127373	+	344	15602820	afuA_3	PM0955	-	AfuA
956	 42.27	0	1127520..1129577	+	685	15602821	afuB_1	PM0956	-	AfuB
957	 42.57	0	1129595..1130644	+	349	15602822	fbpC	PM0957	-	ferric transporter ATP-binding subunit
958	 41.95	0	1130740..1131726	-	328	15602823	rsmC	PM0958	-	16S ribosomal RNA m2G1207 methyltransferase
959	 41.61	0	1131801..1132211	+	136	15602824	hold	PM0959	-	DNA polymerase III subunit psi
960	 38.89	0	1132184..1132651	+	155	15602825	rimI	PM0960	-	ribosomal-protein-alanine N-acetyltransferase
961	 40.24	0	1132693..1136067	-	1124	15602826	recC	PM0961	-	RecC
962	 35.05	-1	1136139..1136429	-	96	15602827	-	PM0962	-	hypothetical protein
963	 35.80	-1	1136413..1137060	-	215	15602828	-	PM0963	-	hypothetical protein
964	 37.96	0	1137057..1137770	-	237	15602829	-	PM0964	-	hypothetical protein
965	 35.61	-1	1137774..1138301	-	175	15602830	-	PM0965	-	hypothetical protein
966	 39.07	0	1138982..1139434	-	150	15602831	-	PM0966	-	hypothetical protein
967	 42.49	0	1139455..1140753	-	432	15602832	tolB	PM0967	-	translocation protein TolB
968	 44.79	+1	1140827..1141996	-	389	15602833	tolA	PM0968	-	cell envelope integrity inner membrane protein TolA
969	 39.72	0	1142012..1142434	-	140	15602834	tolR	PM0969	-	colicin uptake protein TolR
970	 37.97	0	1142510..1143199	-	229	15602835	tolQ	PM0970	-	hypothetical protein
971	 37.96	0	1143218..1143628	-	136	15602836	-	PM0971	-	hypothetical protein
972	 35.42	-1	1143758..1144045	-	95	15602837	-	PM0972	-	hypothetical protein
973	 39.40	0	1144161..1145297	-	378	15602838	cydB	PM0973	-	CydB
974	 38.32	0	1145312..1146874	-	520	15602839	cydA	PM0974	-	CydA
975	 38.32	0	1147334..1147654	+	106	15602840	-	PM0975	-	hypothetical protein
976	 41.47	0	1147713..1148720	-	335	15602841	ruvB	PM0976	-	Holliday junction DNA helicase B
977	 40.16	0	1148739..1149353	-	204	15602842	ruvA	PM0977	-	Holliday junction DNA helicase motor protein
978	 42.41	0	1149417..1149989	-	190	15602843	ruvC	PM0978	-	Holliday junction resolvase
979	 38.20	0	1150071..1150481	-	136	15602844	-	PM0979	-	hypothetical protein
980	 42.11	0	1150567..1151307	-	246	15602845	-	PM0980	-	hypothetical protein
981	 38.92	0	1151294..1151812	-	172	15602846	ntpA	PM0981	-	dATP pyrophosphohydrolase
982	 34.35	-1	1151823..1152608	-	261	15602847	-	PM0982	-	hypothetical protein
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.