IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
825	 35.56	-1	975171..975710	-	179	15602690	-	PM0825	-	hypothetical protein
826	 42.99	0	975707..976648	-	313	15602691	rimK	PM0826	-	RimK
827	 40.15	0	976808..977071	+	87	15602692	grxA	PM0827	-	glutaredoxin 1
828	 39.61	0	977194..978516	+	440	15602693	argA	PM0828	-	N-acetylglutamate synthase
829	 40.57	0	978551..979753	-	400	15602694	pmi	PM0829	-	Pmi
830	 33.12	-2	979765..980223	-	152	15602695	-	PM0830	-	hypothetical protein
831	 35.03	-1	980428..981369	-	313	15602696	ompH_3	PM0831	-	OmpH
832	 41.82	0	981835..982671	-	278	15602697	ptnD	PM0832	-	mannose-specific PTS system protein IID
833	 43.53	0	982686..983489	-	267	15602698	ptnC	PM0833	-	PtnC
834	 42.77	0	983514..984488	-	324	15602699	-	PM0834	-	hypothetical protein
835	 44.99	+1	984879..986096	+	405	15602700	-	PM0835	-	hypothetical protein
836	 35.69	-1	986142..986480	-	112	15602701	-	PM0836	-	hypothetical protein
837	 42.57	0	986676..987758	+	360	15602702	serC	PM0837	-	phosphoserine aminotransferase
838	 39.71	0	987822..988919	+	365	15602703	hisH_1	PM0838	-	histidinol-phosphate aminotransferase
839	 44.37	+1	988954..990276	+	440	15602704	aroA	PM0839	-	3-phosphoshikimate 1-carboxyvinyltransferase
840	 41.56	0	990370..991098	-	242	15602705	ubiG	PM0840	-	3-demethylubiquinone-9 3-methyltransferase
841	 43.59	0	991233..993932	+	899	15602706	gyrA	PM0841	-	DNA gyrase subunit A
842	 36.04	-1	994008..994376	+	122	15602707	-	PM0842	-	hypothetical protein
843	 37.35	0	994595..996361	-	588	15602708	tadG	PM0843	-	hypothetical protein
844	 35.64	-1	996381..996944	-	187	15602709	tadF	PM0844	-	TadF
845	 34.52	-1	996973..997560	-	195	15602710	tadE	PM0845	-	TadE
846	 31.01	-2	997576..998349	-	257	15602711	tadD	PM0846	-	hypothetical protein
847	 29.47	-2	998339..999193	-	284	15602712	tadC	PM0847	-	hypothetical protein
848	 34.13	-1	999190..1000065	-	291	15602713	tadB	PM0848	-	hypothetical protein
849	 37.79	0	1000075..1001352	-	425	15602714	tadA	PM0849	-	hypothetical protein
850	 33.24	-2	1001372..1002493	-	373	15602715	-	PM0850	-	hypothetical protein
851	 37.10	-1	1002510..1003013	-	167	15602716	rcpB	PM0851	-	RcpB
852	 36.66	-1	1003010..1004422	-	470	15602717	rcpA	PM0852	-	RcpA
853	 33.33	-2	1004419..1005231	-	270	15602718	-	PM0853	-	hypothetical protein
854	 29.63	-2	1005274..1005705	-	143	15602719	-	PM0854	-	hypothetical protein
855	 40.00	0	1006014..1006238	-	74	15602720	-	PM0855	-	hypothetical protein
856	 38.71	0	1007548..1008105	-	185	15602721	pgsA	PM0856	-	hypothetical protein
857	 41.01	0	1008201..1010036	-	611	15602722	uvrC	PM0857	-	excinuclease ABC subunit C
858	 42.60	0	1010061..1010837	-	258	15602723	kdsB	PM0858	-	3-deoxy-manno-octulosonate cytidylyltransferase
859	 41.53	0	1010839..1011021	-	60	15602724	-	PM0859	-	hypothetical protein
860	 41.62	0	1011033..1012010	-	325	15602725	lpxK	PM0860	-	tetraacyldisaccharide 4'-kinase
861	 38.71	0	1012042..1013790	-	582	15602726	msbA	PM0861	-	lipid transporter ATP-binding/permease protein
862	 40.06	0	1013843..1016236	-	797	15602727	rec2	PM0862	-	Rec2
863	 40.18	0	1016534..1016971	+	145	15602728	dksA	PM0863	-	hypothetical protein
864	 41.17	0	1017059..1018564	+	501	15602729	pcnB	PM0864	-	hypothetical protein
865	 42.57	0	1018576..1019073	+	165	15602730	folK	PM0865	-	hypothetical protein
866	 39.52	0	1019060..1020142	-	360	15602731	metX	PM0866	-	homoserine O-acetyltransferase
867	 36.12	-1	1020299..1021015	+	238	15602732	sanA	PM0867	-	SanA
868	 39.19	0	1021012..1022001	-	329	15602733	fruR	PM0868	-	DNA-binding transcriptional regulator FruR
869	 38.01	0	1022250..1022741	-	163	15602734	ilvH	PM0869	-	acetolactate synthase 3 regulatory subunit
870	 40.46	0	1022734..1024458	-	574	15602735	ilvI	PM0870	-	acetolactate synthase 3 catalytic subunit
871	 39.17	0	1024757..1026280	-	507	15602736	-	PM0871	-	hypothetical protein
872	 38.27	0	1026768..1027172	+	134	15602737	hns	PM0872	-	hypothetical protein
873	 34.65	-1	1027248..1028084	+	278	15602738	purU	PM0873	-	formyltetrahydrofolate deformylase
874	 40.28	0	1028200..1029336	-	378	15602739	nagA	PM0874	-	N-acetylglucosamine-6-phosphate deacetylase
875	 38.43	0	1029349..1030152	-	267	15602740	nagB	PM0875	-	glucosamine-6-phosphate deaminase
876	 42.73	0	1030460..1031917	+	485	15602741	-	PM0876	-	hypothetical protein
877	 40.31	0	1032003..1033952	-	649	15602742	uup1	PM0877	-	ABC transporter ATPase component
878	 40.95	0	1034068..1035420	-	450	15602743	-	PM0878	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
879	 41.49	0	1035422..1036120	-	232	15602744	-	PM0879	-	hypothetical protein
880	 32.96	-2	1036117..1036653	-	178	15602745	-	PM0880	-	hypothetical protein
881	 42.24	0	1036657..1037139	+	160	15602746	-	PM0881	-	hypothetical protein
882	 43.52	0	1037075..1038340	+	421	15602747	nifS_2	PM0882	-	hypothetical protein
883	 41.01	0	1038344..1038721	+	125	15602748	-	PM0883	-	hypothetical protein
884	 42.70	0	1039136..1040566	-	476	15602749	rfaE	PM0884	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
885	 42.68	0	1040790..1041731	+	313	15602750	-	PM0885	-	lipid A biosynthesis lauroyl acyltransferase
886	 40.80	0	1041830..1042405	-	191	15602751	-	PM0886	-	hypothetical protein
887	 39.19	0	1042395..1043009	-	204	15602752	-	PM0887	-	hypothetical protein
888	 42.00	0	1043015..1043464	-	149	15602753	-	PM0888	-	hypothetical protein
889	 41.23	0	1043485..1044408	-	307	15602754	-	PM0889	-	hypothetical protein
890	 40.22	0	1044453..1045904	-	483	15602755	modF	PM0890	-	putative molybdenum transport ATP-binding protein ModF
891	 40.10	0	1045965..1047206	-	413	15602756	-	PM0891	-	serine/threonine transporter SstT
892	 36.22	-1	1047578..1048027	+	149	15602757	impA	PM0892	-	ImpA
893	 43.06	0	1048135..1049553	-	472	15602758	lpdA	PM0893	-	dihydrolipoamide dehydrogenase
894	 45.50	+1	1049678..1051576	-	632	15602759	aceF	PM0894	-	dihydrolipoamide acetyltransferase
895	 41.89	0	1051649..1054312	-	887	15602760	aceE	PM0895	-	pyruvate dehydrogenase subunit E1
896	 37.72	0	1055015..1055515	-	166	15602761	crr	PM0896	-	glucose-specific PTS system component
897	 38.89	0	1055574..1057301	-	575	15602762	ptsI	PM0897	-	phosphoenolpyruvate-protein phosphotransferase
898	 42.25	0	1057387..1057644	-	85	15602763	ptsH	PM0898	-	PtsH
899	 41.98	0	1057875..1058927	-	350	15602764	-	PM0899	-	ribosome-associated GTPase
900	 36.94	-1	1059010..1059564	+	184	15602765	-	PM0900	-	oligoribonuclease
901	 43.81	0	1059689..1060003	+	104	15602766	-	PM0901	-	hypothetical protein
902	 38.35	0	1060123..1060620	+	165	15602767	-	PM0902	-	hypothetical protein
903	 41.38	0	1060625..1061854	+	409	15602768	-	PM0903	-	hypothetical protein
904	 42.34	0	1061860..1063713	+	617	15602769	mutL	PM0904	-	DNA mismatch repair protein
905	 43.58	0	1063595..1064668	+	357	15602770	miaA	PM0905	-	tRNA delta(2)-isopentenylpyrophosphate transferase
906	 34.36	-1	1064798..1065088	+	96	15602771	hfq	PM0906	-	RNA-binding protein Hfq
907	 41.20	0	1065096..1066442	+	448	15602772	hflX	PM0907	-	hypothetical protein
908	 41.93	0	1066491..1067444	-	317	15602773	tyrR	PM0908	-	hypothetical protein
909	 41.41	0	1067531..1068607	-	358	15602774	-	PM0909	-	hypothetical protein
910	 41.51	0	1068625..1070031	-	468	15602775	-	PM0910	-	hypothetical protein
911	 38.89	0	1070200..1071891	+	563	15602776	sapA	PM0911	-	SapA
912	 40.06	0	1071888..1072853	+	321	15602777	sapB	PM0912	-	hypothetical protein
913	 38.85	0	1072843..1073730	+	295	15602778	sapC	PM0913	-	SapC
914	 39.14	0	1073738..1074787	+	349	15602779	sapD	PM0914	-	SapD
915	 38.97	0	1074800..1075597	+	265	15602780	sapF	PM0915	-	SapF
916	 36.47	-1	1075600..1076397	-	265	15602781	-	PM0916	-	hypothetical protein
917	 37.16	-1	1082228..1083037	-	269	15602782	murI	PM0917	-	glutamate racemase
918	 39.18	0	1083034..1083546	-	170	15602783	-	PM0918	-	hypothetical protein
919	 42.89	0	1083539..1085620	-	693	15602784	recG	PM0919	-	hypothetical protein
920	 40.21	0	1085617..1087740	-	707	15602785	spoT	PM0920	-	hypothetical protein
921	 38.89	0	1087801..1088070	-	89	15602786	rpoZ	PM0921	-	DNA-directed RNA polymerase subunit omega
922	 37.96	0	1088137..1088763	-	208	15602787	gmk	PM0922	-	guanylate kinase
923	 42.24	0	1088861..1089253	-	130	15602788	-	PM0923	-	methionine sulfoxide reductase B
924	 40.90	0	1089501..1090505	+	334	15602789	gapdH	PM0924	-	glyceraldehyde-3-phosphate dehydrogenase
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.