IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.66   STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
713	 39.93	0	831718..832020	+	100	15602578	-	PM0713	-	hypothetical protein
714	 39.67	0	832193..840331	-	2712	15602579	hsf_1	PM0714	-	Hsf
715	 39.41	0	840742..841218	-	158	15602580	greA	PM0715	-	transcription elongation factor GreA
716	 39.69	0	841385..842848	+	487	15602581	dacB	PM0716	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
717	 41.66	0	843244..845514	+	756	15602582	nrdA	PM0717	-	ribonucleotide-diphosphate reductase subunit alpha
718	 42.54	0	845827..847335	+	502	15602583	-	PM0718	-	hypothetical protein
719	 38.82	0	847690..848820	+	376	15602584	nrdB	PM0719	-	ribonucleotide-diphosphate reductase subunit beta
720	 38.55	0	848891..849139	+	82	15602585	-	PM0720	-	hypothetical protein
721	 43.88	0	849141..852230	-	1029	15602586	ttrA	PM0721	-	TtrA
722	 41.90	0	852223..853272	-	349	15602587	ttrC	PM0722	-	TtrC
723	 41.06	0	853269..854006	-	245	15602588	ttrB	PM0723	-	TTRB
724	 39.74	0	854154..855869	+	571	15602589	ttrS	PM0724	-	TtrS
725	 38.69	0	855863..856441	+	192	15602590	ttrR	PM0725	-	hypothetical protein
726	 46.00	+1	856476..857288	-	270	15602591	dapB	PM0726	-	dihydrodipicolinate reductase
727	 36.74	-1	857343..857987	-	214	15602592	-	PM0727	-	hypothetical protein
728	 42.18	0	857993..858478	-	161	15602593	pgpA	PM0728	-	hypothetical protein
729	 41.29	0	858488..859480	-	330	15602594	thiL	PM0729	-	hypothetical protein
730	 39.54	0	859497..859931	-	144	15602595	nusB	PM0730	-	transcription antitermination protein NusB
731	 45.15	+1	859937..860410	-	157	15602596	ribH	PM0731	-	riboflavin synthase subunit beta
732	 40.26	0	860624..861835	+	403	15602597	tyrP_1	PM0732	-	TyrP
733	 41.18	0	861891..862553	-	220	15602598	-	PM0733	-	hypothetical protein
734	 42.25	0	862776..864155	+	459	15602599	htrA	PM0734	-	hypothetical protein
735	 37.54	0	864252..865679	-	475	15602600	-	PM0735	-	hypothetical protein
736	 43.10	0	866033..867937	+	634	15602601	DnaK	PM0736	-	hypothetical protein
737	 38.60	0	868062..868460	+	132	15602602	-	PM0737	-	hypothetical protein
738	 42.16	0	868534..869802	+	422	15602603	metC_1	PM0738	-	hypothetical protein
739	 39.28	0	869803..870189	+	128	15602604	-	PM0739	-	hypothetical protein
740	 42.63	0	870382..871500	+	372	15602605	dnaJ	PM0740	-	hypothetical protein
741	 40.72	0	871807..874161	+	784	15602606	-	PM0741	-	hypothetical protein
742	 40.25	0	874250..875305	-	351	15602607	modC	PM0742	-	molybdate transporter ATP-binding protein
743	 41.02	0	875292..876020	-	242	15602608	modB	PM0743	-	molybdate ABC transporter permease protein
744	 40.13	0	876252..877016	-	254	15602609	modA	PM0744	-	hypothetical protein
745	 38.73	0	877184..879961	-	925	15602610	-	PM0745	-	hypothetical protein
746	 38.38	0	880209..881000	+	263	15602611	modE	PM0746	-	hypothetical protein
747	 35.54	-1	881043..881630	-	195	15602612	-	PM0747	-	hypothetical protein
748	 40.33	0	881662..882690	-	342	15602613	degS	PM0748	-	DegS
749	 46.07	+1	882687..883817	-	376	15602614	ribD	PM0749	-	hypothetical protein
750	 39.33	0	883817..884266	-	149	15602615	-	PM0750	-	transcriptional regulator NrdR
751	 40.99	0	884357..884983	-	208	15602616	-	PM0751	-	hypothetical protein
752	 44.84	+1	885081..886505	-	474	15602617	pntB	PM0752	-	pyridine nucleotide transhydrogenase
753	 44.97	+1	886516..888045	-	509	15602618	pntA	PM0753	-	NAD(P) transhydrogenase subunit alpha
754	 39.14	0	888418..889140	+	240	15602619	sfsA	PM0754	-	sugar fermentation stimulation protein A
755	 41.16	0	889740..890927	+	395	15602620	tyrS	PM0755	-	tyrosyl-tRNA synthetase
756	 43.61	0	891013..891936	-	307	15602621	truB	PM0756	-	tRNA pseudouridine synthase B
757	 39.35	0	891936..892334	-	132	15602622	rbfA	PM0757	-	ribosome-binding factor A
758	 36.82	-1	892517..893320	+	267	15602623	-	PM0758	-	hypothetical protein
759	 45.64	+1	893473..895974	-	833	15602624	infB	PM0759	-	translation initiation factor IF-2
760	 41.41	0	895990..897474	-	494	15602625	nusA	PM0760	-	transcription elongation factor NusA
761	 38.58	0	897492..898025	-	177	15602626	-	PM0761	-	hypothetical protein
762	 38.02	0	898497..899243	-	248	15602627	-	PM0762	-	transcriptional repressor UlaR
763	 39.10	0	899338..900429	-	363	15602628	-	PM0763	-	putative L-ascorbate 6-phosphate lactonase
764	 39.98	0	900779..902569	+	596	161723313	ulaA	PM0764	-	ascorbate-specific PTS system enzyme IIC/IIB
765	 41.24	0	902614..903081	+	155	15602630	-	PM0765	-	hypothetical protein
766	 42.33	0	903099..903776	+	225	15602631	ulaD	PM0766	-	3-keto-L-gulonate-6-phosphate decarboxylase
767	 28.17	-2	904180..904392	-	70	15602632	-	PM0767	-	hypothetical protein
768	 28.43	-2	904495..905106	-	203	15602633	-	PM0768	-	hypothetical protein
769	 41.48	0	906161..910000	-	1279	161723312	hrpA	PM0769	-	ATP-dependent RNA helicase HrpA
770	 40.62	0	910072..910455	-	127	15602635	-	PM0770	-	hypothetical protein
771	 40.18	0	910477..910929	-	150	15602636	-	PM0771	-	hypothetical protein
772	 35.29	-1	910965..912191	-	408	15602637	phyB	PM0772	-	PhyB
773	 36.30	-1	912201..914291	-	696	15602638	phyA	PM0773	-	PhyA
774	 32.37	-2	914639..916507	+	622	15602639	hyaE	PM0774	-	HyaE
775	 31.23	-2	916524..919421	+	965	15602640	-	PM0775	-	hypothetical protein
776	 34.70	-1	919485..920657	+	390	15602641	-	PM0776	-	hypothetical protein
777	 34.24	-1	920650..922083	+	477	15602642	-	PM0777	-	hypothetical protein
778	 37.39	0	922102..923283	+	393	15602643	hexD	PM0778	-	HexD
779	 36.24	-1	923293..924429	+	378	15602644	hexC	PM0779	-	HexC
780	 38.97	0	924429..925226	+	265	15602645	hexB	PM0780	-	HexB
781	 36.67	-1	925223..925882	+	219	15602646	hexA	PM0781	-	HexA
782	 38.48	0	925918..926247	-	109	15602647	-	PM0782	-	hypothetical protein
783	 43.66	0	926332..927096	-	254	15602648	-	PM0783	-	hypothetical protein
784	 37.78	0	927089..927538	-	149	15602649	-	PM0784	-	hypothetical protein
785	 38.66	0	927565..928146	-	193	15602650	-	PM0785	-	hypothetical protein
786	 40.58	0	928243..929304	-	353	15602651	-	PM0786	-	hypothetical protein
787	 41.04	0	929838..932924	+	1028	15602652	-	PM0787	-	hypothetical protein
788	 41.90	0	932926..933345	+	139	15602653	-	PM0788	-	hypothetical protein
789	 40.67	0	933338..934318	+	326	15602654	hemH	PM0789	-	ferrochelatase
790	 41.69	0	934368..935468	-	366	15602655	selD	PM0790	-	hypothetical protein
791	 41.84	0	935538..936536	+	332	15602656	-	PM0791	-	hypothetical protein
792	 39.88	0	936596..937114	-	172	15602657	glk	PM0792	-	Glk
793	 42.52	0	937367..938716	+	449	15602658	gntP_1	PM0793	-	GntP
794	 42.52	0	938809..940005	-	398	15602659	metC_2	PM0794	-	cystathionine beta-lyase
795	 41.96	0	940188..940790	+	200	15602660	tsaA	PM0795	-	TsaA
796	 40.57	0	940926..941243	-	105	15602661	-	PM0796	-	translation initiation factor Sui1
797	 40.17	0	941246..941947	-	233	15602662	pyrF	PM0797	-	orotidine 5'-phosphate decarboxylase
798	 38.05	0	941984..943171	-	395	15602663	-	PM0798	-	hypothetical protein
799	 34.68	-1	943171..943467	-	98	15602664	-	PM0799	-	hypothetical protein
800	 38.60	0	943563..943847	-	94	15602665	himD	PM0800	-	HimD
801	 39.09	0	943919..945568	-	549	15602666	rpsA	PM0801	-	30S ribosomal protein S1
802	 43.27	0	945674..946357	-	227	15602667	cmk	PM0802	-	cytidylate kinase
803	 38.63	0	946589..948967	+	792	15602668	-	PM0803	-	hypothetical protein
804	 39.61	0	949050..951821	+	923	15602669	pqqL	PM0804	-	hypothetical protein
805	 35.80	-1	952099..952260	+	53	15602670	-	PM0805	-	hypothetical protein
806	 39.16	0	952545..954707	+	720	15602671	speF	PM0806	-	ornithine decarboxylase
807	 42.47	0	954764..956077	+	437	15602672	potE	PM0807	-	putrescine transporter
808	 41.89	0	956260..957264	+	334	15602673	arg	PM0808	-	ornithine carbamoyltransferase
809	 38.83	0	957334..958206	-	290	15602674	-	PM0809	-	hypothetical protein
810	 39.75	0	958348..959562	-	404	15602675	tyrP_2	PM0810	-	TyrP
811	 40.74	0	959657..961033	-	458	15602676	-	PM0811	-	tyrosine phenol-lyase
812	 41.86	0	961521..961649	-	42	15602677	-	PM0812	-	hypothetical protein
40.66	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.