IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.66   STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
683	 41.75	0	792792..794015	-	407	15602548	nagC	PM0683	-	hypothetical protein
684	 40.77	0	794093..795397	-	434	15602549	hemA	PM0684	-	glutamyl-tRNA reductase
685	 40.46	0	795547..796248	-	233	15602550	-	PM0685	-	hypothetical protein
686	 39.19	0	796271..796987	+	238	15602551	-	PM0686	-	hypothetical protein
687	 39.35	0	797065..798825	+	586	15602552	-	PM0687	-	hypothetical protein
688	 35.99	-1	798946..799359	+	137	15602553	-	PM0688	-	hypothetical protein
689	 36.32	-1	799589..800290	+	233	15602554	-	PM0689	-	hypothetical protein
690	 37.60	0	800361..801134	-	257	15602555	-	PM0690	-	hypothetical protein
691	 39.55	0	801144..801947	-	267	15602556	-	PM0691	-	exonuclease III
692	 43.63	0	802195..804156	+	653	15602557	acsA	PM0692	-	acetyl-CoA synthetase
693	 40.49	0	804251..804907	-	218	15602558	folE	PM0693	-	GTP cyclohydrolase I
694	 45.45	+1	805150..806370	+	406	15602559	moeA	PM0694	-	hypothetical protein
695	 43.38	0	806372..807088	+	238	15602560	moeB	PM0695	-	molybdopterin biosynthesis protein MoeB
696	 33.03	-2	807167..810436	+	1089	15602561	-	PM0696	-	hypothetical protein
697	 32.58	-2	810436..811098	+	220	15602562	-	PM0697	-	hypothetical protein
698	 34.85	-1	811164..813074	+	636	15602563	-	PM0698	-	hypothetical protein
699	 33.91	-1	813084..816215	+	1043	15602564	-	PM0699	-	hypothetical protein
700	 42.96	0	816261..816842	-	193	15602565	ubiX	PM0700	-	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
701	 41.25	0	817002..818516	-	504	15602566	purF	PM0701	-	amidophosphoribosyltransferase
702	 37.80	0	818530..819021	-	163	15602567	cvpA	PM0702	-	hypothetical protein
703	 36.71	-1	819177..819620	-	147	15602568	-	PM0703	-	hypothetical protein
704	 40.46	0	819907..821112	+	401	15602569	ackA	PM0704	-	acetate kinase
705	 42.50	0	821181..823319	+	712	15602570	pta	PM0705	-	phosphate acetyltransferase
706	 41.49	0	823393..824544	-	383	15602571	rnd	PM0706	-	ribonuclease D
707	 40.91	0	824599..826287	-	562	15602572	fadD_1	PM0707	-	long-chain-fatty-acid--CoA ligase
708	 41.85	0	826409..826948	-	179	15602573	-	PM0708	-	hypothetical protein
709	 45.42	+1	826984..827703	-	239	15602574	-	PM0709	-	hypothetical protein
710	 42.18	0	827709..829652	-	647	15602575	dnt	PM0710	-	Dnt
711	 43.80	0	829736..830557	+	273	15602576	-	PM0711	-	hypothetical protein
712	 43.02	0	830628..831587	-	319	15602577	-	PM0712	-	hypothetical protein
713	 39.93	0	831718..832020	+	100	15602578	-	PM0713	-	hypothetical protein
714	 39.67	0	832193..840331	-	2712	15602579	hsf_1	PM0714	-	Hsf
715	 39.41	0	840742..841218	-	158	15602580	greA	PM0715	-	transcription elongation factor GreA
716	 39.69	0	841385..842848	+	487	15602581	dacB	PM0716	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
717	 41.66	0	843244..845514	+	756	15602582	nrdA	PM0717	-	ribonucleotide-diphosphate reductase subunit alpha
718	 42.54	0	845827..847335	+	502	15602583	-	PM0718	-	hypothetical protein
719	 38.82	0	847690..848820	+	376	15602584	nrdB	PM0719	-	ribonucleotide-diphosphate reductase subunit beta
720	 38.55	0	848891..849139	+	82	15602585	-	PM0720	-	hypothetical protein
721	 43.88	0	849141..852230	-	1029	15602586	ttrA	PM0721	-	TtrA
722	 41.90	0	852223..853272	-	349	15602587	ttrC	PM0722	-	TtrC
723	 41.06	0	853269..854006	-	245	15602588	ttrB	PM0723	-	TTRB
724	 39.74	0	854154..855869	+	571	15602589	ttrS	PM0724	-	TtrS
725	 38.69	0	855863..856441	+	192	15602590	ttrR	PM0725	-	hypothetical protein
726	 46.00	+1	856476..857288	-	270	15602591	dapB	PM0726	-	dihydrodipicolinate reductase
727	 36.74	-1	857343..857987	-	214	15602592	-	PM0727	-	hypothetical protein
728	 42.18	0	857993..858478	-	161	15602593	pgpA	PM0728	-	hypothetical protein
729	 41.29	0	858488..859480	-	330	15602594	thiL	PM0729	-	hypothetical protein
730	 39.54	0	859497..859931	-	144	15602595	nusB	PM0730	-	transcription antitermination protein NusB
731	 45.15	+1	859937..860410	-	157	15602596	ribH	PM0731	-	riboflavin synthase subunit beta
732	 40.26	0	860624..861835	+	403	15602597	tyrP_1	PM0732	-	TyrP
733	 41.18	0	861891..862553	-	220	15602598	-	PM0733	-	hypothetical protein
734	 42.25	0	862776..864155	+	459	15602599	htrA	PM0734	-	hypothetical protein
735	 37.54	0	864252..865679	-	475	15602600	-	PM0735	-	hypothetical protein
736	 43.10	0	866033..867937	+	634	15602601	DnaK	PM0736	-	hypothetical protein
737	 38.60	0	868062..868460	+	132	15602602	-	PM0737	-	hypothetical protein
738	 42.16	0	868534..869802	+	422	15602603	metC_1	PM0738	-	hypothetical protein
739	 39.28	0	869803..870189	+	128	15602604	-	PM0739	-	hypothetical protein
740	 42.63	0	870382..871500	+	372	15602605	dnaJ	PM0740	-	hypothetical protein
741	 40.72	0	871807..874161	+	784	15602606	-	PM0741	-	hypothetical protein
742	 40.25	0	874250..875305	-	351	15602607	modC	PM0742	-	molybdate transporter ATP-binding protein
743	 41.02	0	875292..876020	-	242	15602608	modB	PM0743	-	molybdate ABC transporter permease protein
744	 40.13	0	876252..877016	-	254	15602609	modA	PM0744	-	hypothetical protein
745	 38.73	0	877184..879961	-	925	15602610	-	PM0745	-	hypothetical protein
746	 38.38	0	880209..881000	+	263	15602611	modE	PM0746	-	hypothetical protein
747	 35.54	-1	881043..881630	-	195	15602612	-	PM0747	-	hypothetical protein
748	 40.33	0	881662..882690	-	342	15602613	degS	PM0748	-	DegS
749	 46.07	+1	882687..883817	-	376	15602614	ribD	PM0749	-	hypothetical protein
750	 39.33	0	883817..884266	-	149	15602615	-	PM0750	-	transcriptional regulator NrdR
751	 40.99	0	884357..884983	-	208	15602616	-	PM0751	-	hypothetical protein
752	 44.84	+1	885081..886505	-	474	15602617	pntB	PM0752	-	pyridine nucleotide transhydrogenase
753	 44.97	+1	886516..888045	-	509	15602618	pntA	PM0753	-	NAD(P) transhydrogenase subunit alpha
754	 39.14	0	888418..889140	+	240	15602619	sfsA	PM0754	-	sugar fermentation stimulation protein A
755	 41.16	0	889740..890927	+	395	15602620	tyrS	PM0755	-	tyrosyl-tRNA synthetase
756	 43.61	0	891013..891936	-	307	15602621	truB	PM0756	-	tRNA pseudouridine synthase B
757	 39.35	0	891936..892334	-	132	15602622	rbfA	PM0757	-	ribosome-binding factor A
758	 36.82	-1	892517..893320	+	267	15602623	-	PM0758	-	hypothetical protein
759	 45.64	+1	893473..895974	-	833	15602624	infB	PM0759	-	translation initiation factor IF-2
760	 41.41	0	895990..897474	-	494	15602625	nusA	PM0760	-	transcription elongation factor NusA
761	 38.58	0	897492..898025	-	177	15602626	-	PM0761	-	hypothetical protein
762	 38.02	0	898497..899243	-	248	15602627	-	PM0762	-	transcriptional repressor UlaR
763	 39.10	0	899338..900429	-	363	15602628	-	PM0763	-	putative L-ascorbate 6-phosphate lactonase
764	 39.98	0	900779..902569	+	596	161723313	ulaA	PM0764	-	ascorbate-specific PTS system enzyme IIC/IIB
765	 41.24	0	902614..903081	+	155	15602630	-	PM0765	-	hypothetical protein
766	 42.33	0	903099..903776	+	225	15602631	ulaD	PM0766	-	3-keto-L-gulonate-6-phosphate decarboxylase
767	 28.17	-2	904180..904392	-	70	15602632	-	PM0767	-	hypothetical protein
768	 28.43	-2	904495..905106	-	203	15602633	-	PM0768	-	hypothetical protein
769	 41.48	0	906161..910000	-	1279	161723312	hrpA	PM0769	-	ATP-dependent RNA helicase HrpA
770	 40.62	0	910072..910455	-	127	15602635	-	PM0770	-	hypothetical protein
771	 40.18	0	910477..910929	-	150	15602636	-	PM0771	-	hypothetical protein
772	 35.29	-1	910965..912191	-	408	15602637	phyB	PM0772	-	PhyB
773	 36.30	-1	912201..914291	-	696	15602638	phyA	PM0773	-	PhyA
774	 32.37	-2	914639..916507	+	622	15602639	hyaE	PM0774	-	HyaE
775	 31.23	-2	916524..919421	+	965	15602640	-	PM0775	-	hypothetical protein
776	 34.70	-1	919485..920657	+	390	15602641	-	PM0776	-	hypothetical protein
777	 34.24	-1	920650..922083	+	477	15602642	-	PM0777	-	hypothetical protein
778	 37.39	0	922102..923283	+	393	15602643	hexD	PM0778	-	HexD
779	 36.24	-1	923293..924429	+	378	15602644	hexC	PM0779	-	HexC
780	 38.97	0	924429..925226	+	265	15602645	hexB	PM0780	-	HexB
781	 36.67	-1	925223..925882	+	219	15602646	hexA	PM0781	-	HexA
782	 38.48	0	925918..926247	-	109	15602647	-	PM0782	-	hypothetical protein
40.66	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.