IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.66   STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
586	 39.07	0	675351..676169	+	272	15602451	plp4	PM0586	-	Plp4
587	 39.45	0	676223..677089	-	288	15602452	-	PM0587	-	hypothetical protein
588	 41.32	0	677344..678846	+	500	15602453	putP_2	PM0588	-	hypothetical protein
589	 42.90	0	678919..682515	+	1198	15602454	putA	PM0589	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
590	 42.68	0	682610..683743	+	377	15602455	-	PM0590	-	hypothetical protein
591	 36.89	-1	683824..685398	+	524	15602456	-	PM0591	-	hypothetical protein
592	 42.92	0	685467..687062	-	531	15602457	hbpA	PM0592	-	HbpA
593	 42.96	0	687397..689328	+	643	15602458	thrS	PM0593	-	threonyl-tRNA synthetase
594	 30.18	-2	689570..690871	+	433	15602459	-	PM0594	-	hypothetical protein
595	 28.50	-2	690873..692774	+	633	15602460	-	PM0595	-	hypothetical protein
596	 38.70	0	692836..693636	-	266	15602461	-	PM0596	-	hypothetical protein
597	 36.37	-1	693867..695546	+	559	15602462	-	PM0597	-	putative symporter YidK
598	 38.03	0	695592..696995	+	467	15602463	-	PM0598	-	hypothetical protein
599	 36.70	-1	697146..697739	+	197	15602464	-	PM0599	-	hypothetical protein
600	 37.92	0	697752..698885	+	377	15602465	-	PM0600	-	hypothetical protein
601	 37.33	0	698907..699731	+	274	15602466	-	PM0601	-	hypothetical protein
602	 43.44	0	699932..700396	+	154	15602467	infC	PM0602	-	translation initiation factor IF-3
603	 38.38	0	700794..700991	+	65	15602468	rpmI	PM0603	-	50S ribosomal protein L35
604	 41.53	0	701062..701415	+	117	15602469	rplT	PM0604	-	50S ribosomal protein L20
605	 39.43	0	702691..703215	-	174	15602470	-	PM0605	-	methionine sulfoxide reductase A
606	 37.67	0	703250..704194	-	314	15602471	-	PM0606	-	hypothetical protein
607	 41.25	0	704372..705697	+	441	15602472	kicB	PM0607	-	condesin subunit F
608	 42.08	0	705748..706479	+	243	15602473	kicA	PM0608	-	condesin subunit E
609	 42.67	0	706479..710966	+	1495	15602474	mukB	PM0609	-	cell division protein MukB
610	 38.75	0	711133..711999	+	288	15602475	-	PM0610	-	hypothetical protein
611	 38.17	0	712101..713528	+	475	15602476	sbcB	PM0611	-	exonuclease I
612	 33.01	-2	714398..714709	+	103	15602477	-	PM0612	-	hypothetical protein
613	 33.33	-2	714768..715160	+	130	15602478	-	PM0613	-	hypothetical protein
614	 33.69	-2	715173..715451	+	92	15602479	-	PM0614	-	hypothetical protein
615	 41.35	0	715517..718123	-	868	15602480	topA	PM0615	-	DNA topoisomerase I
616	 43.65	0	718284..719117	-	277	15602481	-	PM0616	-	hypothetical protein
617	 42.25	0	719204..720223	-	339	15602482	pyrD	PM0617	-	dihydroorotate dehydrogenase 2
618	 40.54	0	720376..722985	-	869	15602483	pepN	PM0618	-	hypothetical protein
619	 45.11	+1	723156..723656	+	166	15602484	purE	PM0619	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
620	 41.32	0	723719..724807	+	362	15602485	purK	PM0620	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
621	 39.88	0	724950..726140	+	396	15602486	aspC	PM0621	-	aromatic amino acid aminotransferase
622	 43.05	0	726202..726654	-	150	15602487	moaE	PM0622	-	hypothetical protein
623	 43.09	0	726655..726900	-	81	15602488	moaD	PM0623	-	molybdopterin synthase small subunit
624	 45.07	+1	726913..727389	-	158	15602489	moaC	PM0624	-	molybdenum cofactor biosynthesis protein C
625	 39.55	0	727449..728462	-	337	15602490	moaA	PM0625	-	molybdenum cofactor biosynthesis protein A
626	 41.86	0	728836..729762	+	308	15602491	-	PM0626	-	hypothetical protein
627	 38.33	0	729782..730261	-	159	15602492	-	PM0627	-	hypothetical protein
628	 38.72	0	730350..730646	-	98	15602493	himA	PM0628	-	hypothetical protein
629	 42.25	0	730650..733037	-	795	15602494	pheT	PM0629	-	phenylalanyl-tRNA synthetase subunit beta
630	 36.25	-1	733060..733539	-	159	15602495	-	PM0630	-	hypothetical protein
631	 40.96	0	733550..734533	-	327	15602496	pheS	PM0631	-	phenylalanyl-tRNA synthetase subunit alpha
632	 34.87	-1	734712..735230	-	172	15602497	-	PM0632	-	hypothetical protein
633	 41.03	0	735259..735921	-	220	15602498	-	PM0633	-	hypothetical protein
634	 42.24	0	736029..736679	+	216	15602499	gpmB	PM0634	-	hypothetical protein
635	 42.81	0	736710..738038	-	442	15602500	folC	PM0635	-	hypothetical protein
636	 40.98	0	738031..738945	-	304	15602501	accD	PM0636	-	acetyl-CoA carboxylase subunit beta
637	 42.64	0	739029..739823	-	264	15602502	truA	PM0637	-	tRNA pseudouridine synthase A
638	 39.15	0	739981..740823	+	280	15602503	-	PM0638	-	hypothetical protein
639	 40.70	0	740893..741177	-	94	15602504	rpL25	PM0639	-	50S ribosomal protein L25
640	 38.14	0	741386..742009	+	207	15602505	-	PM0640	-	hypothetical protein
641	 37.69	0	742077..742811	-	244	15602506	bioD	PM0641	-	dithiobiotin synthetase
642	 36.39	-1	742976..744187	-	403	15602507	mlc	PM0642	-	Mlc
643	 41.60	0	744470..745885	+	471	15602508	asnC	PM0643	-	asparaginyl-tRNA synthetase
644	 41.14	0	745946..748303	+	785	15602509	ponC	PM0644	-	PonC
645	 41.84	0	748349..749194	-	281	15602510	-	PM0645	-	hypothetical protein
646	 40.09	0	749269..750984	+	571	15602511	lppC	PM0646	-	LppC
647	 40.83	0	750986..751345	+	119	15602512	-	PM0647	-	hypothetical protein
648	 37.76	0	751348..751935	+	195	15602513	-	PM0648	-	hypothetical protein
649	 40.68	0	751999..752583	+	194	15602514	-	PM0649	-	hypothetical protein
650	 37.89	0	752644..753258	-	204	15602515	ribE	PM0650	-	riboflavin synthase subunit alpha
651	 41.58	0	753314..754708	+	464	15602516	-	PM0651	-	multidrug efflux protein
652	 38.46	0	754708..755760	+	350	15602517	-	PM0652	-	hypothetical protein
653	 39.79	0	755890..757329	-	479	15602518	pykA	PM0653	-	pyruvate kinase
654	 41.78	0	757549..757761	-	70	15602519	-	PM0654	-	hypothetical protein
655	 39.05	0	758088..758297	-	69	15602520	msmB	PM0655	-	MsmB
656	 36.12	-1	758645..759505	+	286	15602521	tehB	PM0656	-	tellurite resistance protein TehB
657	 34.44	-1	759543..760625	-	360	15602522	-	PM0657	-	hypothetical protein
658	 41.94	0	760786..761610	-	274	15602523	dapD	PM0658	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
659	 39.84	0	761793..767510	+	1905	15602524	-	PM0659	-	hypothetical protein
660	 38.48	0	767591..768562	-	323	15602525	cysB	PM0660	-	transcriptional regulator CysB
661	 42.49	0	768603..769640	-	345	15602526	-	PM0661	-	hypothetical protein
662	 40.06	0	769689..770312	-	207	15602527	-	PM0662	-	hypothetical protein
663	 38.98	0	770628..773126	-	832	15602528	-	PM0663	-	hypothetical protein
664	 41.24	0	773366..774490	-	374	15602529	tyrA	PM0664	-	bifunctional chorismate mutase/prephenate dehydrogenase
665	 40.46	0	774500..775552	-	350	15602530	aroF	PM0665	-	phospho-2-dehydro-3-deoxyheptonate aldolase
666	 35.39	-1	775937..776422	+	161	15602531	rsgA_1	PM0666	-	RsgA
667	 34.94	-1	776438..776935	+	165	15602532	rsgA_2	PM0667	-	RsgA
668	 36.25	-1	777159..777980	+	273	15602533	fnr	PM0668	-	fumarate/nitrate reduction transcriptional regulator
669	 37.38	0	778092..779030	+	312	15602534	-	PM0669	-	universal stress protein UspE
670	 35.73	-1	779093..779467	-	124	15602535	-	PM0670	-	hypothetical protein
671	 38.06	0	779547..781430	-	627	15602536	sppA	PM0671	-	hypothetical protein
672	 41.08	0	781554..782108	+	184	15602537	-	PM0672	-	hypothetical protein
673	 37.38	0	782337..783077	-	246	15602538	-	PM0673	-	hypothetical protein
674	 38.82	0	783153..783845	-	230	15602539	-	PM0674	-	hypothetical protein
675	 40.22	0	783999..784913	-	304	15602540	-	PM0675	-	N-acetyl-D-glucosamine kinase
676	 37.05	-1	784963..785688	-	241	15602541	pdpB	PM0676	-	PdpB
677	 40.30	0	785764..786423	+	219	15602542	ribA	PM0677	-	GTP cyclohydrolase II
678	 40.84	0	786475..788046	-	523	15602543	-	PM0678	-	hypothetical protein
679	 33.61	-2	788103..788465	-	120	15602544	-	PM0679	-	hypothetical protein
680	 40.15	0	788587..790626	+	679	15602545	prlC	PM0680	-	PrlC
681	 40.02	0	790687..791988	-	433	15602546	-	PM0681	-	hypothetical protein
682	 38.51	0	792145..792453	-	102	15602547	-	PM0682	-	hypothetical protein
683	 41.75	0	792792..794015	-	407	15602548	nagC	PM0683	-	hypothetical protein
684	 40.77	0	794093..795397	-	434	15602549	hemA	PM0684	-	glutamyl-tRNA reductase
685	 40.46	0	795547..796248	-	233	15602550	-	PM0685	-	hypothetical protein
40.66	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.