IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
537	 40.99	0	613696..614727	+	343	15602402	-	PM0537	-	putative sulfite oxidase subunit YedY
538	 38.16	0	614727..615347	+	206	15602403	-	PM0538	-	putative sulfite oxidase subunit YedZ
539	 36.69	-1	615388..615864	+	158	15602404	-	PM0539	-	hypothetical protein
540	 42.22	0	616319..618412	+	697	15602405	malQ	PM0540	-	hypothetical protein
541	 43.50	0	618444..620636	+	730	15602406	glgB	PM0541	-	glycogen branching enzyme
542	 42.38	0	620710..622698	+	662	15602407	glgx	PM0542	-	Glgx
543	 40.61	0	622759..624078	+	439	15602408	glgC	PM0543	-	glucose-1-phosphate adenylyltransferase
544	 42.41	0	624158..625600	+	480	15602409	glgA	PM0544	-	glycogen synthase
545	 39.60	0	625725..628181	+	818	15602410	glgP	PM0545	-	hypothetical protein
546	 44.05	+1	628288..630927	-	879	15602411	ppc	PM0546	-	phosphoenolpyruvate carboxylase
547	 41.00	0	631172..632176	-	334	15602412	purR	PM0547	-	DNA-binding transcriptional repressor PurR
548	 44.26	+1	632494..633381	-	295	15602413	-	PM0548	-	hypothetical protein
549	 40.33	0	633405..633947	-	180	15602414	argR	PM0549	-	arginine repressor
550	 41.77	0	634091..635026	+	311	15602415	mdh_2	PM0550	-	malate dehydrogenase
551	 40.83	0	635328..637061	-	577	161723314	argS	PM0551	-	arginyl-tRNA synthetase
552	 35.06	-1	637103..637738	+	211	15602417	-	PM0552	-	hypothetical protein
553	 33.99	-1	637740..638045	+	101	15602418	-	PM0553	-	hypothetical protein
554	 41.08	0	638073..638537	+	154	15602419	lpp	PM0554	-	outer membrane lipoprotein
555	 41.27	0	638702..639784	+	360	15602420	prfA	PM0555	-	peptide chain release factor 1
556	 41.58	0	639843..640739	+	298	15602421	hemK	PM0556	-	hypothetical protein
557	 39.25	0	640745..641539	+	264	15602422	-	PM0557	-	hypothetical protein
558	 40.58	0	641553..642407	+	284	15602423	kdsA	PM0558	-	2-dehydro-3-deoxyphosphooctonate aldolase
559	 41.64	0	642590..643540	+	316	15602424	-	PM0559	-	glycerate dehydrogenase
560	 40.13	0	643622..644812	+	396	15602425	-	PM0560	-	hypothetical protein
561	 41.37	0	644829..645512	+	227	15602426	-	PM0561	-	hypothetical protein
562	 40.19	0	645513..646766	+	417	15602427	-	PM0562	-	outer membrane-specific lipoprotein transporter subunit LolE
563	 41.71	0	646913..647998	+	361	15602428	aroG	PM0563	-	phospho-2-dehydro-3-deoxyheptonate aldolase
564	 42.71	0	648219..649445	+	408	15602429	codB	PM0564	-	cytosine permease
565	 40.14	0	649455..650717	+	420	15602430	-	PM0565	-	cytosine deaminase
566	 42.33	0	650809..651831	-	340	15602431	ivlE	PM0566	-	branched-chain amino acid aminotransferase
567	 36.28	-1	652303..653184	+	293	15602432	gcvA	PM0567	-	DNA-binding transcriptional activator GcvA
568	 41.44	0	653184..654281	+	365	15602433	-	PM0568	-	putative RNA 2'-O-ribose methyltransferase
569	 43.52	0	654361..655224	-	287	15602434	-	PM0569	-	hypothetical protein
570	 43.00	0	655221..656099	-	292	15602435	tesB	PM0570	-	TesB
571	 40.32	0	656414..658144	-	576	15602436	cycC	PM0571	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
572	 41.27	0	658144..659907	-	587	15602437	cycD	PM0572	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
573	 44.34	+1	659993..660946	-	317	15602438	trxB	PM0573	-	hypothetical protein
574	 39.91	0	661028..661681	-	217	15602439	-	PM0574	-	hypothetical protein
575	 38.84	0	662017..662706	-	229	15602440	-	PM0575	-	hypothetical protein
576	 32.84	-2	662872..665100	+	742	15602441	hemR	PM0576	-	HemR
577	 42.50	0	665139..665945	-	268	15602442	trpA	PM0577	-	tryptophan synthase subunit alpha
578	 45.99	+1	665932..667140	-	402	15602443	trpB	PM0578	-	tryptophan synthase subunit beta
579	 45.19	+1	667342..668100	-	252	15602444	ydfG	PM0579	-	NADP-dependent dehydrogenase
580	 41.21	0	668136..669545	-	469	15602445	trpC	PM0580	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
581	 44.31	+1	669582..670583	-	333	15602446	trpD	PM0581	-	anthranilate phosphoribosyltransferase
582	 37.74	0	670751..671635	+	294	15602447	-	PM0582	-	hypothetical protein
583	 40.31	0	671652..672239	-	195	15602448	trpG_1	PM0583	-	anthranilate synthase component II
584	 41.97	0	672250..673800	-	516	15602449	trpE	PM0584	-	anthranilate synthase component I
585	 40.02	0	674049..675110	+	353	15602450	sohB	PM0585	-	putative periplasmic protease
586	 39.07	0	675351..676169	+	272	15602451	plp4	PM0586	-	Plp4
587	 39.45	0	676223..677089	-	288	15602452	-	PM0587	-	hypothetical protein
588	 41.32	0	677344..678846	+	500	15602453	putP_2	PM0588	-	hypothetical protein
589	 42.90	0	678919..682515	+	1198	15602454	putA	PM0589	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
590	 42.68	0	682610..683743	+	377	15602455	-	PM0590	-	hypothetical protein
591	 36.89	-1	683824..685398	+	524	15602456	-	PM0591	-	hypothetical protein
592	 42.92	0	685467..687062	-	531	15602457	hbpA	PM0592	-	HbpA
593	 42.96	0	687397..689328	+	643	15602458	thrS	PM0593	-	threonyl-tRNA synthetase
594	 30.18	-2	689570..690871	+	433	15602459	-	PM0594	-	hypothetical protein
595	 28.50	-2	690873..692774	+	633	15602460	-	PM0595	-	hypothetical protein
596	 38.70	0	692836..693636	-	266	15602461	-	PM0596	-	hypothetical protein
597	 36.37	-1	693867..695546	+	559	15602462	-	PM0597	-	putative symporter YidK
598	 38.03	0	695592..696995	+	467	15602463	-	PM0598	-	hypothetical protein
599	 36.70	-1	697146..697739	+	197	15602464	-	PM0599	-	hypothetical protein
600	 37.92	0	697752..698885	+	377	15602465	-	PM0600	-	hypothetical protein
601	 37.33	0	698907..699731	+	274	15602466	-	PM0601	-	hypothetical protein
602	 43.44	0	699932..700396	+	154	15602467	infC	PM0602	-	translation initiation factor IF-3
603	 38.38	0	700794..700991	+	65	15602468	rpmI	PM0603	-	50S ribosomal protein L35
604	 41.53	0	701062..701415	+	117	15602469	rplT	PM0604	-	50S ribosomal protein L20
605	 39.43	0	702691..703215	-	174	15602470	-	PM0605	-	methionine sulfoxide reductase A
606	 37.67	0	703250..704194	-	314	15602471	-	PM0606	-	hypothetical protein
607	 41.25	0	704372..705697	+	441	15602472	kicB	PM0607	-	condesin subunit F
608	 42.08	0	705748..706479	+	243	15602473	kicA	PM0608	-	condesin subunit E
609	 42.67	0	706479..710966	+	1495	15602474	mukB	PM0609	-	cell division protein MukB
610	 38.75	0	711133..711999	+	288	15602475	-	PM0610	-	hypothetical protein
611	 38.17	0	712101..713528	+	475	15602476	sbcB	PM0611	-	exonuclease I
612	 33.01	-2	714398..714709	+	103	15602477	-	PM0612	-	hypothetical protein
613	 33.33	-2	714768..715160	+	130	15602478	-	PM0613	-	hypothetical protein
614	 33.69	-2	715173..715451	+	92	15602479	-	PM0614	-	hypothetical protein
615	 41.35	0	715517..718123	-	868	15602480	topA	PM0615	-	DNA topoisomerase I
616	 43.65	0	718284..719117	-	277	15602481	-	PM0616	-	hypothetical protein
617	 42.25	0	719204..720223	-	339	15602482	pyrD	PM0617	-	dihydroorotate dehydrogenase 2
618	 40.54	0	720376..722985	-	869	15602483	pepN	PM0618	-	hypothetical protein
619	 45.11	+1	723156..723656	+	166	15602484	purE	PM0619	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
620	 41.32	0	723719..724807	+	362	15602485	purK	PM0620	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
621	 39.88	0	724950..726140	+	396	15602486	aspC	PM0621	-	aromatic amino acid aminotransferase
622	 43.05	0	726202..726654	-	150	15602487	moaE	PM0622	-	hypothetical protein
623	 43.09	0	726655..726900	-	81	15602488	moaD	PM0623	-	molybdopterin synthase small subunit
624	 45.07	+1	726913..727389	-	158	15602489	moaC	PM0624	-	molybdenum cofactor biosynthesis protein C
625	 39.55	0	727449..728462	-	337	15602490	moaA	PM0625	-	molybdenum cofactor biosynthesis protein A
626	 41.86	0	728836..729762	+	308	15602491	-	PM0626	-	hypothetical protein
627	 38.33	0	729782..730261	-	159	15602492	-	PM0627	-	hypothetical protein
628	 38.72	0	730350..730646	-	98	15602493	himA	PM0628	-	hypothetical protein
629	 42.25	0	730650..733037	-	795	15602494	pheT	PM0629	-	phenylalanyl-tRNA synthetase subunit beta
630	 36.25	-1	733060..733539	-	159	15602495	-	PM0630	-	hypothetical protein
631	 40.96	0	733550..734533	-	327	15602496	pheS	PM0631	-	phenylalanyl-tRNA synthetase subunit alpha
632	 34.87	-1	734712..735230	-	172	15602497	-	PM0632	-	hypothetical protein
633	 41.03	0	735259..735921	-	220	15602498	-	PM0633	-	hypothetical protein
634	 42.24	0	736029..736679	+	216	15602499	gpmB	PM0634	-	hypothetical protein
635	 42.81	0	736710..738038	-	442	15602500	folC	PM0635	-	hypothetical protein
636	 40.98	0	738031..738945	-	304	15602501	accD	PM0636	-	acetyl-CoA carboxylase subunit beta
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.