IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
513	 43.11	0	586981..588075	+	364	15602378	-	PM0513	-	hypothetical protein
514	 41.25	0	588283..589557	+	424	15602379	-	PM0514	-	hypothetical protein
515	 40.00	0	589557..589916	+	119	15602380	-	PM0515	-	hypothetical protein
516	 41.46	0	589977..593669	+	1230	15602381	recB	PM0516	-	hypothetical protein
517	 41.34	0	593669..595642	+	657	15602382	recD	PM0517	-	hypothetical protein
518	 37.50	0	595680..596327	+	215	15602383	grx2	PM0518	-	glutaredoxin 2
519	 35.36	-1	596418..596762	+	114	15602384	-	PM0519	-	hypothetical protein
520	 42.89	0	597043..597471	+	142	15602385	rplM	PM0520	-	50S ribosomal protein L13
521	 44.53	+1	597488..597880	+	130	15602386	rpS9	PM0521	-	RpS9
522	 38.97	0	598079..598717	+	212	15602387	sspA	PM0522	-	hypothetical protein
523	 39.34	0	598723..599205	+	160	15602388	sspB	PM0523	-	ClpXP protease specificity-enhancing factor
524	 44.14	+1	599268..599813	-	181	15602389	-	PM0524	-	hypothetical protein
525	 41.59	0	599813..600853	-	346	15602390	kpsF	PM0525	-	KpsF
526	 43.81	0	601311..602045	-	244	15602391	-	PM0526	-	hypothetical protein
527	 40.20	0	602101..603468	-	455	15602392	-	PM0527	-	hypothetical protein
528	 41.01	0	603945..605624	+	559	15602393	glnS	PM0528	-	glutaminyl-tRNA synthetase
529	 40.43	0	605796..607274	+	492	15602394	-	PM0529	-	hypothetical protein
530	 39.23	0	607374..607865	+	163	15602395	-	PM0530	-	hypothetical protein
531	 39.26	0	607850..608389	+	179	15602396	-	PM0531	-	hypothetical protein
532	 41.19	0	608496..610340	-	614	15602397	dxs	PM0532	-	1-deoxy-D-xylulose-5-phosphate synthase
533	 43.47	0	610407..611294	-	295	15602398	ispA	PM0533	-	hypothetical protein
534	 38.62	0	611313..611558	-	81	15602399	xseB	PM0534	-	exodeoxyribonuclease VII small subunit
535	 39.29	0	611759..613201	+	480	15602400	thiI	PM0535	-	thiamine biosynthesis protein ThiI
536	 40.50	0	613241..613561	-	106	15602401	-	PM0536	-	dsDNA-mimic protein
537	 40.99	0	613696..614727	+	343	15602402	-	PM0537	-	putative sulfite oxidase subunit YedY
538	 38.16	0	614727..615347	+	206	15602403	-	PM0538	-	putative sulfite oxidase subunit YedZ
539	 36.69	-1	615388..615864	+	158	15602404	-	PM0539	-	hypothetical protein
540	 42.22	0	616319..618412	+	697	15602405	malQ	PM0540	-	hypothetical protein
541	 43.50	0	618444..620636	+	730	15602406	glgB	PM0541	-	glycogen branching enzyme
542	 42.38	0	620710..622698	+	662	15602407	glgx	PM0542	-	Glgx
543	 40.61	0	622759..624078	+	439	15602408	glgC	PM0543	-	glucose-1-phosphate adenylyltransferase
544	 42.41	0	624158..625600	+	480	15602409	glgA	PM0544	-	glycogen synthase
545	 39.60	0	625725..628181	+	818	15602410	glgP	PM0545	-	hypothetical protein
546	 44.05	+1	628288..630927	-	879	15602411	ppc	PM0546	-	phosphoenolpyruvate carboxylase
547	 41.00	0	631172..632176	-	334	15602412	purR	PM0547	-	DNA-binding transcriptional repressor PurR
548	 44.26	+1	632494..633381	-	295	15602413	-	PM0548	-	hypothetical protein
549	 40.33	0	633405..633947	-	180	15602414	argR	PM0549	-	arginine repressor
550	 41.77	0	634091..635026	+	311	15602415	mdh_2	PM0550	-	malate dehydrogenase
551	 40.83	0	635328..637061	-	577	161723314	argS	PM0551	-	arginyl-tRNA synthetase
552	 35.06	-1	637103..637738	+	211	15602417	-	PM0552	-	hypothetical protein
553	 33.99	-1	637740..638045	+	101	15602418	-	PM0553	-	hypothetical protein
554	 41.08	0	638073..638537	+	154	15602419	lpp	PM0554	-	outer membrane lipoprotein
555	 41.27	0	638702..639784	+	360	15602420	prfA	PM0555	-	peptide chain release factor 1
556	 41.58	0	639843..640739	+	298	15602421	hemK	PM0556	-	hypothetical protein
557	 39.25	0	640745..641539	+	264	15602422	-	PM0557	-	hypothetical protein
558	 40.58	0	641553..642407	+	284	15602423	kdsA	PM0558	-	2-dehydro-3-deoxyphosphooctonate aldolase
559	 41.64	0	642590..643540	+	316	15602424	-	PM0559	-	glycerate dehydrogenase
560	 40.13	0	643622..644812	+	396	15602425	-	PM0560	-	hypothetical protein
561	 41.37	0	644829..645512	+	227	15602426	-	PM0561	-	hypothetical protein
562	 40.19	0	645513..646766	+	417	15602427	-	PM0562	-	outer membrane-specific lipoprotein transporter subunit LolE
563	 41.71	0	646913..647998	+	361	15602428	aroG	PM0563	-	phospho-2-dehydro-3-deoxyheptonate aldolase
564	 42.71	0	648219..649445	+	408	15602429	codB	PM0564	-	cytosine permease
565	 40.14	0	649455..650717	+	420	15602430	-	PM0565	-	cytosine deaminase
566	 42.33	0	650809..651831	-	340	15602431	ivlE	PM0566	-	branched-chain amino acid aminotransferase
567	 36.28	-1	652303..653184	+	293	15602432	gcvA	PM0567	-	DNA-binding transcriptional activator GcvA
568	 41.44	0	653184..654281	+	365	15602433	-	PM0568	-	putative RNA 2'-O-ribose methyltransferase
569	 43.52	0	654361..655224	-	287	15602434	-	PM0569	-	hypothetical protein
570	 43.00	0	655221..656099	-	292	15602435	tesB	PM0570	-	TesB
571	 40.32	0	656414..658144	-	576	15602436	cycC	PM0571	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
572	 41.27	0	658144..659907	-	587	15602437	cycD	PM0572	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
573	 44.34	+1	659993..660946	-	317	15602438	trxB	PM0573	-	hypothetical protein
574	 39.91	0	661028..661681	-	217	15602439	-	PM0574	-	hypothetical protein
575	 38.84	0	662017..662706	-	229	15602440	-	PM0575	-	hypothetical protein
576	 32.84	-2	662872..665100	+	742	15602441	hemR	PM0576	-	HemR
577	 42.50	0	665139..665945	-	268	15602442	trpA	PM0577	-	tryptophan synthase subunit alpha
578	 45.99	+1	665932..667140	-	402	15602443	trpB	PM0578	-	tryptophan synthase subunit beta
579	 45.19	+1	667342..668100	-	252	15602444	ydfG	PM0579	-	NADP-dependent dehydrogenase
580	 41.21	0	668136..669545	-	469	15602445	trpC	PM0580	-	bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase
581	 44.31	+1	669582..670583	-	333	15602446	trpD	PM0581	-	anthranilate phosphoribosyltransferase
582	 37.74	0	670751..671635	+	294	15602447	-	PM0582	-	hypothetical protein
583	 40.31	0	671652..672239	-	195	15602448	trpG_1	PM0583	-	anthranilate synthase component II
584	 41.97	0	672250..673800	-	516	15602449	trpE	PM0584	-	anthranilate synthase component I
585	 40.02	0	674049..675110	+	353	15602450	sohB	PM0585	-	putative periplasmic protease
586	 39.07	0	675351..676169	+	272	15602451	plp4	PM0586	-	Plp4
587	 39.45	0	676223..677089	-	288	15602452	-	PM0587	-	hypothetical protein
588	 41.32	0	677344..678846	+	500	15602453	putP_2	PM0588	-	hypothetical protein
589	 42.90	0	678919..682515	+	1198	15602454	putA	PM0589	-	bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
590	 42.68	0	682610..683743	+	377	15602455	-	PM0590	-	hypothetical protein
591	 36.89	-1	683824..685398	+	524	15602456	-	PM0591	-	hypothetical protein
592	 42.92	0	685467..687062	-	531	15602457	hbpA	PM0592	-	HbpA
593	 42.96	0	687397..689328	+	643	15602458	thrS	PM0593	-	threonyl-tRNA synthetase
594	 30.18	-2	689570..690871	+	433	15602459	-	PM0594	-	hypothetical protein
595	 28.50	-2	690873..692774	+	633	15602460	-	PM0595	-	hypothetical protein
596	 38.70	0	692836..693636	-	266	15602461	-	PM0596	-	hypothetical protein
597	 36.37	-1	693867..695546	+	559	15602462	-	PM0597	-	putative symporter YidK
598	 38.03	0	695592..696995	+	467	15602463	-	PM0598	-	hypothetical protein
599	 36.70	-1	697146..697739	+	197	15602464	-	PM0599	-	hypothetical protein
600	 37.92	0	697752..698885	+	377	15602465	-	PM0600	-	hypothetical protein
601	 37.33	0	698907..699731	+	274	15602466	-	PM0601	-	hypothetical protein
602	 43.44	0	699932..700396	+	154	15602467	infC	PM0602	-	translation initiation factor IF-3
603	 38.38	0	700794..700991	+	65	15602468	rpmI	PM0603	-	50S ribosomal protein L35
604	 41.53	0	701062..701415	+	117	15602469	rplT	PM0604	-	50S ribosomal protein L20
605	 39.43	0	702691..703215	-	174	15602470	-	PM0605	-	methionine sulfoxide reductase A
606	 37.67	0	703250..704194	-	314	15602471	-	PM0606	-	hypothetical protein
607	 41.25	0	704372..705697	+	441	15602472	kicB	PM0607	-	condesin subunit F
608	 42.08	0	705748..706479	+	243	15602473	kicA	PM0608	-	condesin subunit E
609	 42.67	0	706479..710966	+	1495	15602474	mukB	PM0609	-	cell division protein MukB
610	 38.75	0	711133..711999	+	288	15602475	-	PM0610	-	hypothetical protein
611	 38.17	0	712101..713528	+	475	15602476	sbcB	PM0611	-	exonuclease I
612	 33.01	-2	714398..714709	+	103	15602477	-	PM0612	-	hypothetical protein
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.