IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.66   STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
456	 42.53	0	530422..532749	-	775	15602321	ponB	PM0456	-	PonB
457	 38.94	0	532778..533134	-	118	15602322	-	PM0457	-	hypothetical protein
458	 41.16	0	533136..533480	-	114	15602323	-	PM0458	-	iron-sulfur cluster insertion protein ErpA
459	 42.04	0	533616..534419	+	267	15602324	map	PM0459	-	methionine aminopeptidase
460	 40.12	0	534480..537074	+	864	15602325	glnD	PM0460	-	PII uridylyl-transferase
461	 44.25	+1	537170..538030	-	286	15602326	-	PM0461	-	hypothetical protein
462	 44.16	+1	538040..539323	-	427	15602327	hemL	PM0462	-	hypothetical protein
463	 37.62	0	539456..540529	+	357	15602328	rfe	PM0463	-	hypothetical protein
464	 35.85	-1	540535..541368	+	277	15602329	-	PM0464	-	hypothetical protein
465	 39.60	0	548126..549034	-	302	15602330	-	PM0465	-	hypothetical protein
466	 38.45	0	549103..550665	+	520	15602331	-	PM0466	-	hypothetical protein
467	 40.82	0	550753..551820	+	355	15602332	dinP	PM0467	-	DNA polymerase IV
468	 42.28	0	551907..552767	+	286	15602333	htpX	PM0468	-	heat shock protein HtpX
469	 40.22	0	552862..553398	+	178	15602334	-	PM0469	-	hypothetical protein
470	 40.47	0	553412..554350	+	312	15602335	yagD	PM0470	-	YagD
471	 40.23	0	554347..555114	+	255	15602336	-	PM0471	-	hypothetical protein
472	 40.22	0	555145..556233	+	362	15602337	-	PM0472	-	hypothetical protein
473	 41.70	0	556298..558928	+	876	15602338	-	PM0473	-	hypothetical protein
474	 39.72	0	558938..559360	+	140	15602339	-	PM0474	-	hypothetical protein
475	 40.42	0	559431..560798	-	455	15602340	-	PM0475	-	hypothetical protein
476	 39.40	0	560807..561646	-	279	15602341	queF	PM0476	-	7-cyano-7-deazaguanine reductase
477	 40.84	0	561690..562475	-	261	15602342	-	PM0477	-	hypothetical protein
478	 38.99	0	562606..562923	+	105	15602343	-	PM0478	-	hypothetical protein
479	 39.34	0	562927..563658	+	243	15602344	-	PM0479	-	tRNA pseudouridine synthase C
480	 36.36	-1	563698..563862	+	54	15602345	-	PM0480	-	hypothetical protein
481	 39.05	0	564068..564277	+	69	15602346	cspD	PM0481	-	CspD
482	 38.03	0	564347..564793	-	148	15602347	-	PM0482	-	hypothetical protein
483	 40.76	0	564958..566748	+	596	15602348	-	PM0483	-	hypothetical protein
484	 46.07	+1	566863..567396	+	177	15602349	fabA	PM0484	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
485	 39.83	0	567465..567941	-	158	15602350	-	PM0485	-	hypothetical protein
486	 41.03	0	567998..568972	+	324	15602351	usg1	PM0486	-	aspartate-semialdehyde dehydrogenase
487	 29.48	-2	569261..569779	+	172	15602352	-	PM0487	-	hypothetical protein
488	 41.95	0	569890..570237	+	115	15602353	-	PM0488	-	hypothetical protein
489	 28.99	-2	570256..570669	+	137	15602354	-	PM0489	-	hypothetical protein
490	 44.73	+1	570666..571016	+	116	15602355	-	PM0490	-	hypothetical protein
491	 38.54	0	571020..571403	+	127	15602356	-	PM0491	-	hypothetical protein
492	 22.86	-2	571581..571895	+	104	15602357	-	PM0492	-	hypothetical protein
493	 32.85	-2	571996..572406	+	136	15602358	-	PM0493	-	hypothetical protein
494	 37.23	-1	573219..573500	+	93	15602359	-	PM0494	-	hypothetical protein
495	 33.18	-2	573528..574178	+	216	15602360	-	PM0495	-	hypothetical protein
496	 28.24	-2	574178..574687	+	169	15602361	-	PM0496	-	hypothetical protein
497	 25.44	-2	574871..575377	+	168	15602362	-	PM0497	-	hypothetical protein
498	 26.21	-2	575639..576115	+	158	15602363	-	PM0498	-	hypothetical protein
499	 27.91	-2	576287..576673	+	128	15602364	-	PM0499	-	hypothetical protein
500	 31.20	-2	576784..577299	+	171	15602365	-	PM0500	-	hypothetical protein
501	 25.86	-2	577476..577823	+	115	15602366	-	PM0501	-	hypothetical protein
502	 28.77	-2	578249..578752	+	167	15602367	-	PM0502	-	hypothetical protein
503	 40.61	0	578895..579224	+	109	15602368	-	PM0503	-	hypothetical protein
504	 37.16	-1	579221..579664	+	147	15602369	-	PM0504	-	hypothetical protein
505	 36.60	-1	579805..580233	+	142	15602370	-	PM0505	-	hypothetical protein
506	 39.92	0	580314..581057	-	247	15602371	-	PM0506	-	hypothetical protein
507	 38.75	0	581175..582374	+	399	15602372	-	PM0507	-	hypothetical protein
508	 35.06	-1	582376..583302	+	308	15602373	-	PM0508	-	hypothetical protein
509	 41.09	0	583304..584089	+	261	15602374	-	PM0509	-	hypothetical protein
510	 39.06	0	584099..585286	+	395	15602375	-	PM0510	-	hypothetical protein
511	 40.79	0	585286..586170	+	294	15602376	-	PM0511	-	hypothetical protein
512	 41.57	0	586170..586970	+	266	15602377	-	PM0512	-	hypothetical protein
513	 43.11	0	586981..588075	+	364	15602378	-	PM0513	-	hypothetical protein
514	 41.25	0	588283..589557	+	424	15602379	-	PM0514	-	hypothetical protein
515	 40.00	0	589557..589916	+	119	15602380	-	PM0515	-	hypothetical protein
516	 41.46	0	589977..593669	+	1230	15602381	recB	PM0516	-	hypothetical protein
517	 41.34	0	593669..595642	+	657	15602382	recD	PM0517	-	hypothetical protein
518	 37.50	0	595680..596327	+	215	15602383	grx2	PM0518	-	glutaredoxin 2
519	 35.36	-1	596418..596762	+	114	15602384	-	PM0519	-	hypothetical protein
520	 42.89	0	597043..597471	+	142	15602385	rplM	PM0520	-	50S ribosomal protein L13
521	 44.53	+1	597488..597880	+	130	15602386	rpS9	PM0521	-	RpS9
522	 38.97	0	598079..598717	+	212	15602387	sspA	PM0522	-	hypothetical protein
523	 39.34	0	598723..599205	+	160	15602388	sspB	PM0523	-	ClpXP protease specificity-enhancing factor
524	 44.14	+1	599268..599813	-	181	15602389	-	PM0524	-	hypothetical protein
525	 41.59	0	599813..600853	-	346	15602390	kpsF	PM0525	-	KpsF
526	 43.81	0	601311..602045	-	244	15602391	-	PM0526	-	hypothetical protein
527	 40.20	0	602101..603468	-	455	15602392	-	PM0527	-	hypothetical protein
528	 41.01	0	603945..605624	+	559	15602393	glnS	PM0528	-	glutaminyl-tRNA synthetase
529	 40.43	0	605796..607274	+	492	15602394	-	PM0529	-	hypothetical protein
530	 39.23	0	607374..607865	+	163	15602395	-	PM0530	-	hypothetical protein
531	 39.26	0	607850..608389	+	179	15602396	-	PM0531	-	hypothetical protein
532	 41.19	0	608496..610340	-	614	15602397	dxs	PM0532	-	1-deoxy-D-xylulose-5-phosphate synthase
533	 43.47	0	610407..611294	-	295	15602398	ispA	PM0533	-	hypothetical protein
534	 38.62	0	611313..611558	-	81	15602399	xseB	PM0534	-	exodeoxyribonuclease VII small subunit
535	 39.29	0	611759..613201	+	480	15602400	thiI	PM0535	-	thiamine biosynthesis protein ThiI
536	 40.50	0	613241..613561	-	106	15602401	-	PM0536	-	dsDNA-mimic protein
537	 40.99	0	613696..614727	+	343	15602402	-	PM0537	-	putative sulfite oxidase subunit YedY
538	 38.16	0	614727..615347	+	206	15602403	-	PM0538	-	putative sulfite oxidase subunit YedZ
539	 36.69	-1	615388..615864	+	158	15602404	-	PM0539	-	hypothetical protein
540	 42.22	0	616319..618412	+	697	15602405	malQ	PM0540	-	hypothetical protein
541	 43.50	0	618444..620636	+	730	15602406	glgB	PM0541	-	glycogen branching enzyme
542	 42.38	0	620710..622698	+	662	15602407	glgx	PM0542	-	Glgx
543	 40.61	0	622759..624078	+	439	15602408	glgC	PM0543	-	glucose-1-phosphate adenylyltransferase
544	 42.41	0	624158..625600	+	480	15602409	glgA	PM0544	-	glycogen synthase
545	 39.60	0	625725..628181	+	818	15602410	glgP	PM0545	-	hypothetical protein
546	 44.05	+1	628288..630927	-	879	15602411	ppc	PM0546	-	phosphoenolpyruvate carboxylase
547	 41.00	0	631172..632176	-	334	15602412	purR	PM0547	-	DNA-binding transcriptional repressor PurR
548	 44.26	+1	632494..633381	-	295	15602413	-	PM0548	-	hypothetical protein
549	 40.33	0	633405..633947	-	180	15602414	argR	PM0549	-	arginine repressor
550	 41.77	0	634091..635026	+	311	15602415	mdh_2	PM0550	-	malate dehydrogenase
551	 40.83	0	635328..637061	-	577	161723314	argS	PM0551	-	arginyl-tRNA synthetase
552	 35.06	-1	637103..637738	+	211	15602417	-	PM0552	-	hypothetical protein
553	 33.99	-1	637740..638045	+	101	15602418	-	PM0553	-	hypothetical protein
554	 41.08	0	638073..638537	+	154	15602419	lpp	PM0554	-	outer membrane lipoprotein
555	 41.27	0	638702..639784	+	360	15602420	prfA	PM0555	-	peptide chain release factor 1
40.66	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.