IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
407	 45.87	+1	475349..476257	-	302	15602272	fdxH	PM0407	-	FdxH
408	 43.21	0	476259..478688	-	809	15602273	fdxG_1	PM0408	-	FdxG
409	 47.28	+1	478737..479324	-	195	15602274	fdxG_2	PM0409	-	FdxG
410	 41.85	0	479567..480388	+	273	15602275	fdhD	PM0410	-	formate dehydrogenase accessory protein
411	 42.37	0	480549..482729	+	726	15602276	uvrD	PM0411	-	DNA-dependent helicase II
412	 41.38	0	482890..484293	+	467	15602277	dnaB	PM0412	-	replicative DNA helicase
413	 41.64	0	484293..485375	+	360	15602278	alr	PM0413	-	alanine racemase
414	 31.75	-2	485466..487421	-	651	15602279	pglA	PM0414	-	PglA
415	 35.37	-1	487568..487813	+	81	15602280	-	PM0415	-	hypothetical protein
416	 39.88	0	488453..490102	+	549	15602281	pgi	PM0416	-	glucose-6-phosphate isomerase
417	 40.40	0	490186..490836	-	216	15602282	-	PM0417	-	hypothetical protein
418	 39.52	0	491073..491282	+	69	15602283	ner	PM0418	-	Ner
419	 43.16	0	491757..492794	-	345	15602284	-	PM0419	-	hypothetical protein
420	 43.71	0	492952..495225	-	757	15602285	metE	PM0420	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
421	 43.37	0	495524..496450	+	308	15602286	metR	PM0421	-	MetR
422	 39.28	0	496456..497178	+	240	15602287	-	PM0422	-	hypothetical protein
423	 37.58	0	497182..497511	+	109	15602288	-	PM0423	-	hypothetical protein
424	 31.58	-2	497668..497895	+	75	15602289	-	PM0424	-	hypothetical protein
425	 44.94	+1	497943..499613	-	556	15602290	-	PM0425	-	putative ABC transporter ATP-binding protein
426	 40.19	0	500173..500814	+	213	15602291	-	PM0426	-	hypothetical protein
427	 40.97	0	500805..501812	+	335	15602292	-	PM0427	-	hypothetical protein
428	 41.69	0	501813..502781	-	322	15602293	-	PM0428	-	hypothetical protein
429	 41.04	0	503443..505479	+	678	15602294	uvrB	PM0429	-	excinuclease ABC subunit B
430	 40.90	0	505492..506271	+	259	15602295	-	PM0430	-	hypothetical protein
431	 36.73	-1	506318..507613	-	431	15602296	phoR	PM0431	-	PhoR
432	 39.80	0	507610..508305	-	231	15602297	phoB	PM0432	-	PhoB
433	 40.51	0	508432..509211	-	259	15602298	pstB	PM0433	-	hypothetical protein
434	 42.47	0	509229..510071	-	280	15602299	pstA	PM0434	-	hypothetical protein
435	 42.68	0	510072..511034	-	320	15602300	pstC	PM0435	-	hypothetical protein
436	 43.23	0	511097..512308	-	403	15602301	pstS	PM0436	-	hypothetical protein
437	 43.97	0	512402..513031	+	209	15602302	rrmJ	PM0437	-	23S rRNA methyltransferase J
438	 43.59	0	513163..515082	+	639	15602303	ftsH	PM0438	-	hypothetical protein
439	 42.75	0	515215..516042	+	275	15602304	folP	PM0439	-	hypothetical protein
440	 44.42	+1	516063..517397	+	444	15602305	mrsA	PM0440	-	MrsA
441	 41.61	0	517460..517918	+	152	15602306	-	PM0441	-	hypothetical protein
442	 43.62	0	518198..518887	+	229	15602307	-	PM0442	-	hypothetical protein
443	 38.94	0	518936..519613	-	225	15602308	minC	PM0443	-	hypothetical protein
444	 36.51	-1	519707..519958	+	83	15602309	-	PM0444	-	hypothetical protein
445	 43.33	0	519948..520337	-	129	15602310	-	PM0445	-	hypothetical protein
446	 40.59	0	520397..520699	-	100	15602311	-	PM0446	-	hypothetical protein
447	 38.45	0	520703..521230	-	175	15602312	resA	PM0447	-	ResA
448	 44.59	+1	521169..521852	-	227	15602313	-	PM0448	-	hypothetical protein
449	 41.22	0	521913..523028	-	371	15602314	-	PM0449	-	hypothetical protein
450	 44.07	+1	523039..524361	-	440	15602315	-	PM0450	-	hypothetical protein
451	 42.70	0	524361..525758	-	465	15602316	-	PM0451	-	hypothetical protein
452	 42.91	0	525924..526445	-	173	15602317	-	PM0452	-	hypothetical protein
453	 41.00	0	526485..528389	-	634	15602318	-	PM0453	-	hypothetical protein
454	 40.71	0	528656..529360	+	234	161723315	pepE	PM0454	-	peptidase E
455	 41.53	0	529457..530347	+	296	15602320	-	PM0455	-	hypothetical protein
456	 42.53	0	530422..532749	-	775	15602321	ponB	PM0456	-	PonB
457	 38.94	0	532778..533134	-	118	15602322	-	PM0457	-	hypothetical protein
458	 41.16	0	533136..533480	-	114	15602323	-	PM0458	-	iron-sulfur cluster insertion protein ErpA
459	 42.04	0	533616..534419	+	267	15602324	map	PM0459	-	methionine aminopeptidase
460	 40.12	0	534480..537074	+	864	15602325	glnD	PM0460	-	PII uridylyl-transferase
461	 44.25	+1	537170..538030	-	286	15602326	-	PM0461	-	hypothetical protein
462	 44.16	+1	538040..539323	-	427	15602327	hemL	PM0462	-	hypothetical protein
463	 37.62	0	539456..540529	+	357	15602328	rfe	PM0463	-	hypothetical protein
464	 35.85	-1	540535..541368	+	277	15602329	-	PM0464	-	hypothetical protein
465	 39.60	0	548126..549034	-	302	15602330	-	PM0465	-	hypothetical protein
466	 38.45	0	549103..550665	+	520	15602331	-	PM0466	-	hypothetical protein
467	 40.82	0	550753..551820	+	355	15602332	dinP	PM0467	-	DNA polymerase IV
468	 42.28	0	551907..552767	+	286	15602333	htpX	PM0468	-	heat shock protein HtpX
469	 40.22	0	552862..553398	+	178	15602334	-	PM0469	-	hypothetical protein
470	 40.47	0	553412..554350	+	312	15602335	yagD	PM0470	-	YagD
471	 40.23	0	554347..555114	+	255	15602336	-	PM0471	-	hypothetical protein
472	 40.22	0	555145..556233	+	362	15602337	-	PM0472	-	hypothetical protein
473	 41.70	0	556298..558928	+	876	15602338	-	PM0473	-	hypothetical protein
474	 39.72	0	558938..559360	+	140	15602339	-	PM0474	-	hypothetical protein
475	 40.42	0	559431..560798	-	455	15602340	-	PM0475	-	hypothetical protein
476	 39.40	0	560807..561646	-	279	15602341	queF	PM0476	-	7-cyano-7-deazaguanine reductase
477	 40.84	0	561690..562475	-	261	15602342	-	PM0477	-	hypothetical protein
478	 38.99	0	562606..562923	+	105	15602343	-	PM0478	-	hypothetical protein
479	 39.34	0	562927..563658	+	243	15602344	-	PM0479	-	tRNA pseudouridine synthase C
480	 36.36	-1	563698..563862	+	54	15602345	-	PM0480	-	hypothetical protein
481	 39.05	0	564068..564277	+	69	15602346	cspD	PM0481	-	CspD
482	 38.03	0	564347..564793	-	148	15602347	-	PM0482	-	hypothetical protein
483	 40.76	0	564958..566748	+	596	15602348	-	PM0483	-	hypothetical protein
484	 46.07	+1	566863..567396	+	177	15602349	fabA	PM0484	-	3-hydroxydecanoyl-(acyl carrier protein) dehydratase
485	 39.83	0	567465..567941	-	158	15602350	-	PM0485	-	hypothetical protein
486	 41.03	0	567998..568972	+	324	15602351	usg1	PM0486	-	aspartate-semialdehyde dehydrogenase
487	 29.48	-2	569261..569779	+	172	15602352	-	PM0487	-	hypothetical protein
488	 41.95	0	569890..570237	+	115	15602353	-	PM0488	-	hypothetical protein
489	 28.99	-2	570256..570669	+	137	15602354	-	PM0489	-	hypothetical protein
490	 44.73	+1	570666..571016	+	116	15602355	-	PM0490	-	hypothetical protein
491	 38.54	0	571020..571403	+	127	15602356	-	PM0491	-	hypothetical protein
492	 22.86	-2	571581..571895	+	104	15602357	-	PM0492	-	hypothetical protein
493	 32.85	-2	571996..572406	+	136	15602358	-	PM0493	-	hypothetical protein
494	 37.23	-1	573219..573500	+	93	15602359	-	PM0494	-	hypothetical protein
495	 33.18	-2	573528..574178	+	216	15602360	-	PM0495	-	hypothetical protein
496	 28.24	-2	574178..574687	+	169	15602361	-	PM0496	-	hypothetical protein
497	 25.44	-2	574871..575377	+	168	15602362	-	PM0497	-	hypothetical protein
498	 26.21	-2	575639..576115	+	158	15602363	-	PM0498	-	hypothetical protein
499	 27.91	-2	576287..576673	+	128	15602364	-	PM0499	-	hypothetical protein
500	 31.20	-2	576784..577299	+	171	15602365	-	PM0500	-	hypothetical protein
501	 25.86	-2	577476..577823	+	115	15602366	-	PM0501	-	hypothetical protein
502	 28.77	-2	578249..578752	+	167	15602367	-	PM0502	-	hypothetical protein
503	 40.61	0	578895..579224	+	109	15602368	-	PM0503	-	hypothetical protein
504	 37.16	-1	579221..579664	+	147	15602369	-	PM0504	-	hypothetical protein
505	 36.60	-1	579805..580233	+	142	15602370	-	PM0505	-	hypothetical protein
506	 39.92	0	580314..581057	-	247	15602371	-	PM0506	-	hypothetical protein
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.