IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.66   STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
308	 44.03	0	361946..362506	+	186	15602173	-	PM0308	-	hypothetical protein
309	 41.74	0	363838..364194	+	118	15602174	-	PM0309	-	hypothetical protein
310	 45.53	+1	364312..364557	+	81	15602175	-	PM0310	-	hypothetical protein
311	 43.22	0	364764..365744	+	326	15602176	-	PM0311	-	hypothetical protein
312	 43.03	0	365725..369045	+	1106	15602177	-	PM0312	-	hypothetical protein
313	 37.64	0	369103..370959	+	618	15602178	arcB	PM0313	-	hypothetical protein
314	 38.58	0	371100..371690	+	196	15602179	-	PM0314	-	hypothetical protein
315	 40.67	0	371754..372557	-	267	15602180	suhB	PM0315	-	hypothetical protein
316	 40.86	0	372771..373487	+	238	15602181	-	PM0316	-	hypothetical protein
317	 39.14	0	373566..374030	+	154	15602182	-	PM0317	-	hypothetical protein
318	 40.91	0	374078..375292	+	404	15602183	nifS_1	PM0318	-	cysteine desulfurase
319	 37.73	0	375524..375910	+	128	15602184	iscU	PM0319	-	scaffold protein
320	 40.74	0	375980..376303	+	107	15602185	-	PM0320	-	hypothetical protein
321	 38.34	0	376334..376852	+	172	15602186	hscB	PM0321	-	co-chaperone HscB
322	 43.80	0	376930..378792	+	620	15602187	hscA	PM0322	-	chaperone protein HscA
323	 43.75	0	378813..379148	+	111	15602188	fdx-1	PM0323	-	Fdx-1
324	 42.24	0	379224..379964	-	246	15602189	mtgA	PM0324	-	monofunctional biosynthetic peptidoglycan transglycosylase
325	 43.37	0	379942..380250	-	102	15602190	trpR	PM0325	-	Trp operon repressor
326	 42.68	0	380277..382319	-	680	15602191	-	PM0326	-	hypothetical protein
327	 47.81	+2	382463..382759	-	98	161723316	-	PM0327	-	YciI-like protein
328	 44.14	+1	382785..383228	-	147	15602193	-	PM0328	-	hypothetical protein
329	 37.12	-1	383231..383785	-	184	15602194	-	PM0329	-	intracellular septation protein A
330	 36.99	-1	383792..384556	-	254	15602195	-	PM0330	-	hypothetical protein
331	 40.33	0	384823..385437	+	204	15602196	ompW	PM0331	-	OmpW
332	 41.20	0	385501..387177	-	558	15602197	recN	PM0332	-	hypothetical protein
333	 41.50	0	387262..388179	-	305	15602198	ppnK	PM0333	-	inorganic polyphosphate/ATP-NAD kinase
334	 40.43	0	388330..388935	+	201	15602199	grpE	PM0334	-	hypothetical protein
335	 41.41	0	389116..390453	+	445	15602200	-	PM0335	-	hypothetical protein
336	 38.18	0	390504..393473	-	989	15602201	-	PM0336	-	hypothetical protein
337	 40.28	0	393756..396749	-	997	15602202	-	PM0337	-	hypothetical protein
338	 43.78	0	396973..398991	-	672	15602203	mnmC	PM0338	-	5-methylaminomethyl-2-thiouridine methyltransferase
339	 43.98	0	399151..400371	+	406	15602204	fabB	PM0339	-	3-oxoacyl-(acyl carrier protein) synthase I
340	 44.41	+1	400505..401470	-	321	15602205	-	PM0340	-	hypothetical protein
341	 42.51	0	401467..402981	-	504	15602206	putP_1	PM0341	-	hypothetical protein
342	 41.80	0	403136..404611	+	491	15602207	cafA	PM0342	-	ribonuclease G
343	 45.69	+1	404810..406258	+	482	15602208	tldD	PM0343	-	hypothetical protein
344	 43.02	0	406387..407583	+	398	15602209	argD	PM0344	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
345	 40.74	0	407639..408340	-	233	15602210	-	PM0345	-	hypothetical protein
346	 40.38	0	408419..409411	-	330	15602211	ispB	PM0346	-	IspB
347	 42.31	0	409630..409941	+	103	15602212	rplU	PM0347	-	50S ribosomal protein L21
348	 43.80	0	409962..410219	+	85	15602213	rpmA	PM0348	-	50S ribosomal protein L27
349	 38.69	0	410284..411216	+	310	15602214	-	PM0349	-	hypothetical protein
350	 37.58	0	411218..412135	+	305	15602215	-	PM0350	-	hypothetical protein
351	 45.01	+1	412144..413316	+	390	15602216	obgE	PM0351	-	GTPase ObgE
352	 35.37	-1	413401..413841	-	146	15602217	fur	PM0352	-	hypothetical protein
353	 37.90	0	413866..414390	-	174	15602218	fldA	PM0353	-	flavodoxin FldA
354	 35.44	-1	414396..414680	-	94	15602219	-	PM0354	-	LexA regulated protein
355	 40.18	0	414796..415584	-	262	15602220	-	PM0355	-	hypothetical protein
356	 41.22	0	415664..416284	+	206	15602221	seqA	PM0356	-	replication initiation regulator SeqA
357	 43.13	0	416287..417705	+	472	15602222	menE	PM0357	-	O-succinylbenzoic acid--CoA ligase
358	 38.90	0	417702..421043	+	1113	15602223	-	PM0358	-	potassium efflux protein KefA
359	 47.30	+1	421047..422120	+	357	15602224	aroC	PM0359	-	chorismate synthase
360	 45.18	+1	422185..423045	+	286	15602225	mepA	PM0360	-	penicillin-insensitive murein endopeptidase
361	 41.57	0	423055..423819	+	254	15602226	-	PM0361	-	hypothetical protein
362	 41.38	0	423825..424781	+	318	15602227	msbB	PM0362	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
363	 39.23	0	425016..425558	+	180	15602228	apt	PM0363	-	adenine phosphoribosyltransferase
364	 42.14	0	425593..427737	+	714	15602229	dnaX	PM0364	-	DNA polymerase III subunits gamma and tau
365	 40.72	0	427790..429115	-	441	15602230	nhaP	PM0365	-	hypothetical protein
366	 41.53	0	429241..429594	-	117	15602231	-	PM0366	-	hypothetical protein
367	 39.05	0	429696..430412	+	238	15602232	-	PM0367	-	hypothetical protein
368	 43.48	0	430422..431150	+	242	15602233	-	PM0368	-	hypothetical protein
369	 43.63	0	431181..433433	-	750	15602234	parC	PM0369	-	DNA topoisomerase IV subunit A
370	 44.29	+1	433699..435597	-	632	15602235	parE	PM0370	-	DNA topoisomerase IV subunit B
371	 39.57	0	435794..436915	+	373	15602236	nspC	PM0371	-	NspC
372	 40.11	0	437115..438353	+	412	15602237	-	PM0372	-	hypothetical protein
373	 44.77	+1	438506..439423	+	305	15602238	-	PM0373	-	hypothetical protein
374	 36.57	-1	439455..440936	+	493	15602239	-	PM0374	-	hypothetical protein
375	 41.91	0	440996..443956	-	986	15602240	glnE	PM0375	-	GlnE
376	 40.40	0	444251..445255	+	334	15602241	tbpA	PM0376	-	TbpA
377	 41.71	0	445268..446878	+	536	15602242	thiP	PM0377	-	thiamine transporter membrane protein
378	 41.00	0	446871..447548	+	225	15602243	-	PM0378	-	hypothetical protein
379	 44.51	+1	447583..448593	+	336	15602244	bioB	PM0379	-	hypothetical protein
380	 38.45	0	448664..450031	-	455	15602245	-	PM0380	-	hypothetical protein
381	 41.71	0	450056..450688	-	210	15602246	nth	PM0381	-	hypothetical protein
382	 42.11	0	450685..451413	-	242	15602247	-	PM0382	-	SoxR-reducing system protein RsxE
383	 42.86	0	451416..452024	-	202	15602248	-	PM0383	-	electron transport complex protein RnfG
384	 43.62	0	452034..453083	-	349	15602249	rnfD	PM0384	-	electron transport complex protein RnfD
385	 46.25	+1	453098..455605	-	835	15602250	-	PM0385	-	electron transport complex protein RnfC
386	 40.54	0	455610..456206	-	198	15602251	-	PM0386	-	electron transport complex protein RnfB
387	 39.55	0	456203..456781	-	192	15602252	-	PM0387	-	Na(+)-translocating NADH-quinone reductase subunit E
388	 38.59	0	457472..458518	+	348	15602253	ompH_1	PM0388	-	OmpH
389	 38.65	0	458672..459724	+	350	15602254	ompH_2	PM0389	-	OmpH
390	 41.00	0	459828..460844	-	338	15602255	-	PM0390	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
391	 40.63	0	460892..461398	+	168	15602256	-	PM0391	-	hypothetical protein
392	 37.93	0	461378..463531	-	717	15602257	-	PM0392	-	hypothetical protein
393	 41.72	0	463565..464017	-	150	15602258	-	PM0393	-	hypothetical protein
394	 40.31	0	464145..464603	-	152	15602259	mgsA	PM0394	-	methylglyoxal synthase
395	 39.57	0	464662..465318	-	218	15602260	-	PM0395	-	hypothetical protein
396	 41.75	0	465470..465766	+	98	15602261	-	PM0396	-	hypothetical protein
397	 38.93	0	465768..466607	-	279	15602262	yfeD	PM0397	-	YfeD
398	 41.38	0	466600..467469	-	289	15602263	yfeC	PM0398	-	YfeC
399	 40.94	0	467469..468362	-	297	15602264	yfeB	PM0399	-	YfeB
400	 37.30	0	468362..469243	-	293	15602265	yfeA	PM0400	-	YfeA
401	 42.12	0	469356..469685	-	109	15602266	-	PM0401	-	hypothetical protein
402	 38.46	0	469784..470446	-	220	15602267	-	PM0402	-	hypothetical protein
403	 42.64	0	471237..472106	-	289	15602268	hpkR	PM0403	-	HpkR
404	 43.52	0	472482..473345	+	287	15602269	-	PM0404	-	hypothetical protein
405	 43.33	0	473650..474579	-	309	15602270	fdhE	PM0405	-	formate dehydrogenase accessory protein FdhE
406	 42.36	0	474670..475356	-	228	15602271	fdxI	PM0406	-	FdxI
407	 45.87	+1	475349..476257	-	302	15602272	fdxH	PM0407	-	FdxH
40.66	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.