IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.66   STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
237	 41.19	0	267681..268685	+	334	15602102	dppB	PM0237	-	hypothetical protein
238	 43.06	0	268708..269601	+	297	15602103	dppC	PM0238	-	hypothetical protein
239	 44.14	+1	269612..270610	+	332	15602104	dppD	PM0239	-	dipeptide transporter ATP-binding subunit
240	 42.30	0	270627..271607	+	326	15602105	dppF	PM0240	-	dipeptide transporter ATP-binding subunit
241	 42.11	0	271684..272469	-	261	15602106	-	PM0241	-	hypothetical protein
242	 36.49	-1	272478..273269	-	263	15602107	yebM	PM0242	-	YebM
243	 40.98	0	273462..275057	+	531	15602108	-	PM0243	-	hypothetical protein
244	 42.72	0	275133..276080	-	315	15602109	prsA	PM0244	-	ribose-phosphate pyrophosphokinase
245	 38.96	0	276150..277037	-	295	15602110	-	PM0245	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
246	 40.38	0	277037..277660	-	207	15602111	lolB	PM0246	-	outer membrane lipoprotein LolB
247	 43.31	0	277695..278957	-	420	15602112	cca	PM0247	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
248	 40.69	0	278979..279590	-	203	15602113	-	PM0248	-	hypothetical protein
249	 42.68	0	279655..280917	-	420	15602114	-	PM0249	-	hypothetical protein
250	 38.77	0	280944..281624	-	226	15602115	-	PM0250	-	hypothetical protein
251	 38.56	0	281800..282870	+	356	15602116	-	PM0251	-	hypothetical protein
252	 45.00	+1	282874..284253	+	459	15602117	radA	PM0252	-	DNA repair protein RadA
253	 38.14	0	284275..284628	-	117	15602118	-	PM0253	-	hypothetical protein
254	 36.88	-1	284783..285262	+	159	15602119	lrp	PM0254	-	leucine-responsive transcriptional regulator
255	 43.18	0	285267..288059	+	930	15602120	ftsK	PM0255	-	hypothetical protein
256	 39.32	0	288070..288687	+	205	15602121	lolA	PM0256	-	outer-membrane lipoprotein carrier protein
257	 43.80	0	288699..290036	+	445	15602122	-	PM0257	-	recombination factor protein RarA
258	 40.33	0	290295..291581	+	428	15602123	serS	PM0258	-	seryl-tRNA synthetase
259	 39.55	0	291653..292537	-	294	15602124	cdd	PM0259	-	cytidine deaminase
260	 37.63	0	292651..293697	-	348	15602125	potD_1	PM0260	-	PotD
261	 39.00	0	293957..295033	-	358	15602126	potD_2	PM0261	-	PotD
262	 41.02	0	295133..295900	-	255	15602127	potC	PM0262	-	spermidine/putrescine ABC transporter membrane protein
263	 39.06	0	295900..296754	-	284	15602128	potB	PM0263	-	spermidine/putrescine ABC transporter membrane protein
264	 38.06	0	296744..297886	-	380	15602129	potA	PM0264	-	putrescine/spermidine ABC transporter ATPase protein
265	 41.97	0	298180..299418	+	412	15602130	pepT	PM0265	-	peptidase T
266	 40.79	0	299485..302139	-	884	15602131	-	PM0266	-	hypothetical protein
267	 38.42	0	302117..303373	-	418	15602132	-	PM0267	-	hypothetical protein
268	 39.62	0	303452..304231	+	259	15602133	proQ	PM0268	-	putative solute/DNA competence effector
269	 37.91	0	304324..306375	+	683	15602134	prc	PM0269	-	carboxy-terminal protease
270	 37.47	0	306400..307947	+	515	15602135	-	PM0270	-	hypothetical protein
271	 39.57	0	308092..308652	+	186	15602136	-	PM0271	-	hypothetical protein
272	 41.75	0	308725..309354	+	209	15602137	-	PM0272	-	hypothetical protein
273	 44.94	+1	309412..310695	-	427	15602138	-	PM0273	-	hypothetical protein
274	 40.99	0	310692..311318	-	208	15602139	-	PM0274	-	hypothetical protein
275	 38.34	0	311389..312507	-	372	15602140	-	PM0275	-	hypothetical protein
276	 42.58	0	312644..313930	-	428	15602141	gltA	PM0276	-	GltA
277	 42.74	0	314248..317043	+	931	15602142	kgd	PM0277	-	alpha-ketoglutarate decarboxylase
278	 44.03	0	317118..318332	+	404	15602143	sucB	PM0278	-	hypothetical protein
279	 39.63	0	318426..318806	+	126	15602144	-	PM0279	-	hypothetical protein
280	 44.99	+1	318911..320077	+	388	15602145	sucC	PM0280	-	succinyl-CoA synthetase subunit beta
281	 47.47	+2	320079..320948	+	289	15602146	sucD	PM0281	-	hypothetical protein
282	 29.34	-2	321193..322746	+	517	15602147	-	PM0282	-	hypothetical protein
283	 28.40	-2	322706..323638	+	310	15602148	-	PM0283	-	hypothetical protein
284	 42.95	0	323720..324364	-	214	15602149	adk	PM0284	-	adenylate kinase
285	 40.69	0	324513..325790	-	425	15602150	-	PM0285	-	hypothetical protein
286	 40.31	0	325793..326809	-	338	15602151	galE	PM0286	-	hypothetical protein
287	 43.07	0	327076..328389	+	437	15602152	-	PM0287	-	hypothetical protein
288	 45.42	+1	328496..329662	-	388	15602153	lldD	PM0288	-	hypothetical protein
289	 44.21	+1	329899..331194	-	431	15602154	mesJ	PM0289	-	hypothetical protein
290	 41.23	0	331250..332110	-	286	15602155	pdxY	PM0290	-	pyridoxamine kinase
291	 37.24	-1	332112..332828	-	238	15602156	-	PM0291	-	hypothetical protein
292	 41.09	0	332880..333833	-	317	15602157	accA	PM0292	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
293	 42.18	0	334538..336109	-	523	15602158	guaA	PM0293	-	bifunctional GMP synthase/glutamine amidotransferase protein
294	 33.02	-2	336218..337489	-	423	15602159	-	PM0294	-	hypothetical protein
295	 44.06	+1	337563..339026	-	487	15602160	guaB	PM0295	-	inositol-5-monophosphate dehydrogenase
296	 39.51	0	339194..340132	+	312	15602161	birA	PM0296	-	biotin--protein ligase
297	 38.19	0	340195..341079	-	294	15602162	-	PM0297	-	hypothetical protein
298	 39.39	0	348239..348667	+	142	15602163	-	PM0298	-	hypothetical protein
299	 38.18	0	348683..349198	+	171	15602164	-	PM0299	-	hypothetical protein
300	 35.03	-1	349240..352131	+	963	15602165	-	PM0300	-	hypothetical protein
301	 38.89	0	352299..352568	+	89	15602166	rpsO	PM0301	-	30S ribosomal protein S15
302	 42.05	0	352706..353818	-	370	15602167	mrp	PM0302	-	putative ATPase
303	 40.51	0	354000..356048	+	682	15602168	metG	PM0303	-	methionyl-tRNA synthetase
304	 43.29	0	356182..358341	+	719	15602169	-	PM0304	-	23S rRNA m(2)G2445 methyltransferase
305	 34.61	-1	358606..359940	+	444	15602170	-	PM0305	-	hypothetical protein
306	 44.51	+1	359950..360933	+	327	15602171	-	PM0306	-	hypothetical protein
307	 40.08	0	360936..361943	+	335	15602172	-	PM0307	-	hypothetical protein
308	 44.03	0	361946..362506	+	186	15602173	-	PM0308	-	hypothetical protein
309	 41.74	0	363838..364194	+	118	15602174	-	PM0309	-	hypothetical protein
310	 45.53	+1	364312..364557	+	81	15602175	-	PM0310	-	hypothetical protein
311	 43.22	0	364764..365744	+	326	15602176	-	PM0311	-	hypothetical protein
312	 43.03	0	365725..369045	+	1106	15602177	-	PM0312	-	hypothetical protein
313	 37.64	0	369103..370959	+	618	15602178	arcB	PM0313	-	hypothetical protein
314	 38.58	0	371100..371690	+	196	15602179	-	PM0314	-	hypothetical protein
315	 40.67	0	371754..372557	-	267	15602180	suhB	PM0315	-	hypothetical protein
316	 40.86	0	372771..373487	+	238	15602181	-	PM0316	-	hypothetical protein
317	 39.14	0	373566..374030	+	154	15602182	-	PM0317	-	hypothetical protein
318	 40.91	0	374078..375292	+	404	15602183	nifS_1	PM0318	-	cysteine desulfurase
319	 37.73	0	375524..375910	+	128	15602184	iscU	PM0319	-	scaffold protein
320	 40.74	0	375980..376303	+	107	15602185	-	PM0320	-	hypothetical protein
321	 38.34	0	376334..376852	+	172	15602186	hscB	PM0321	-	co-chaperone HscB
322	 43.80	0	376930..378792	+	620	15602187	hscA	PM0322	-	chaperone protein HscA
323	 43.75	0	378813..379148	+	111	15602188	fdx-1	PM0323	-	Fdx-1
324	 42.24	0	379224..379964	-	246	15602189	mtgA	PM0324	-	monofunctional biosynthetic peptidoglycan transglycosylase
325	 43.37	0	379942..380250	-	102	15602190	trpR	PM0325	-	Trp operon repressor
326	 42.68	0	380277..382319	-	680	15602191	-	PM0326	-	hypothetical protein
327	 47.81	+2	382463..382759	-	98	161723316	-	PM0327	-	YciI-like protein
328	 44.14	+1	382785..383228	-	147	15602193	-	PM0328	-	hypothetical protein
329	 37.12	-1	383231..383785	-	184	15602194	-	PM0329	-	intracellular septation protein A
330	 36.99	-1	383792..384556	-	254	15602195	-	PM0330	-	hypothetical protein
331	 40.33	0	384823..385437	+	204	15602196	ompW	PM0331	-	OmpW
332	 41.20	0	385501..387177	-	558	15602197	recN	PM0332	-	hypothetical protein
333	 41.50	0	387262..388179	-	305	15602198	ppnK	PM0333	-	inorganic polyphosphate/ATP-NAD kinase
334	 40.43	0	388330..388935	+	201	15602199	grpE	PM0334	-	hypothetical protein
335	 41.41	0	389116..390453	+	445	15602200	-	PM0335	-	hypothetical protein
336	 38.18	0	390504..393473	-	989	15602201	-	PM0336	-	hypothetical protein
40.66	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.