IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1917	 41.15	0	2155195..2155923	+	242	15603781	fabG	PM1916	-	3-ketoacyl-(acyl-carrier-protein) reductase
1918	 36.36	-1	2156184..2156414	+	76	15603782	acpP	PM1917	-	acyl carrier protein
1919	 42.64	0	2156643..2157974	+	443	15603783	-	PM1918	-	anaerobic C4-dicarboxylate transporter
1920	 39.49	0	2158088..2158996	+	302	15603784	-	PM1919	-	hypothetical protein
1921	 43.07	0	2159044..2160306	-	420	15603785	rho	PM1920	-	transcription termination factor Rho
1922	 43.08	0	2160520..2161791	+	423	15603786	rhlB	PM1921	-	ATP-dependent RNA helicase RhlB
1923	 40.38	0	2161848..2162159	+	103	15603787	-	PM1922	-	hypothetical protein
1924	 46.58	+1	2162163..2162630	+	155	15603788	-	PM1923	-	SPOUT methyltransferase superfamily protein
1925	 41.19	0	2162643..2164577	+	644	15603789	pbp2	PM1924	-	Pbp2
1926	 43.01	0	2164577..2165692	+	371	15603790	rodA	PM1925	-	RodA
1927	 38.64	0	2165742..2166626	+	294	15603791	-	PM1926	-	hypothetical protein
1928	 38.82	0	2166653..2167837	+	394	15603792	dacA	PM1927	-	DacA
1929	 39.06	0	2167940..2168236	+	98	15603793	-	PM1928	-	hypothetical protein
1930	 41.10	0	2168243..2168899	+	218	15603794	lipB	PM1929	-	lipoyltransferase
1931	 41.33	0	2168964..2169926	+	320	15603795	lipA	PM1930	-	lipoyl synthase
1932	 32.86	-2	2170004..2170423	-	139	15603796	-	PM1931	-	hypothetical protein
1933	 48.15	+2	2170704..2170919	+	71	15603797	-	PM1932	-	hypothetical protein
1934	 44.21	+1	2171066..2171920	+	284	15603798	folD	PM1933	-	hypothetical protein
1935	 35.44	-1	2171936..2172220	+	94	15603799	-	PM1934	-	hypothetical protein
1936	 36.15	-1	2172651..2172863	-	70	15603800	-	PM1935	-	hypothetical protein
1937	 36.25	-1	2172959..2173711	-	250	15603801	-	PM1936	-	hypothetical protein
1938	 41.94	0	2173746..2174291	+	181	15603802	-	PM1937	-	hypothetical protein
1939	 42.76	0	2174564..2176111	-	515	15603803	-	PM1938	-	hypothetical protein
1940	 41.45	0	2176123..2176578	-	151	15603804	-	PM1939	-	hypothetical protein
1941	 42.33	0	2176582..2177292	+	236	15603805	-	PM1940	-	hypothetical protein
1942	 33.33	-2	2177719..2178117	-	132	15603806	-	PM1941	-	hypothetical protein
1943	 39.35	0	2178190..2178804	+	204	15603807	-	PM1942	-	hypothetical protein
1944	 47.69	+2	2178888..2179904	-	338	15603808	-	PM1943	-	hypothetical protein
1945	 43.95	0	2179908..2180312	-	134	15603809	-	PM1944	-	hypothetical protein
1946	 40.77	0	2180657..2181100	+	147	15603810	ycaN	PM1945	-	YcaN
1947	 31.14	-2	2181346..2181756	-	136	15603811	-	PM1946	-	hypothetical protein
1948	 32.60	-2	2181758..2183794	-	678	15603812	-	PM1947	-	hypothetical protein
1949	 32.02	-2	2183797..2185317	-	506	15603813	-	PM1948	-	hypothetical protein
1950	 29.14	-2	2185304..2186590	-	428	15603814	-	PM1949	-	hypothetical protein
1951	 48.30	+2	2186734..2187234	-	166	15603815	ssb	PM1950	-	single-strand DNA-binding protein
1952	 42.44	0	2187406..2190237	+	943	15603816	uvrA	PM1951	-	excinuclease ABC subunit A
1953	 44.74	+1	2190308..2190868	+	186	15603817	sodC	PM1952	-	SodC
1954	 44.99	+1	2190954..2191691	-	245	15603818	-	PM1953	-	23S rRNA (guanosine-2'-O-)-methyltransferase
1955	 42.86	0	2191692..2194094	-	800	15603819	vacB	PM1954	-	hypothetical protein
1956	 45.08	+1	2194366..2195421	+	351	15603820	mreB	PM1955	-	hypothetical protein
1957	 42.10	0	2195500..2196549	+	349	15603821	mreC	PM1956	-	hypothetical protein
1958	 41.10	0	2196549..2197037	+	162	15603822	mreD	PM1957	-	hypothetical protein
1959	 36.89	-1	2197057..2197506	-	149	15603823	-	PM1958	-	hypothetical protein
1960	 41.42	0	2197831..2198436	-	201	15603824	leuD	PM1959	-	isopropylmalate isomerase small subunit
1961	 48.47	+2	2198639..2200045	-	468	15603825	leuC	PM1960	-	isopropylmalate isomerase large subunit
1962	 45.46	+1	2200386..2201465	-	359	15603826	leuB	PM1961	-	3-isopropylmalate dehydrogenase
1963	 43.42	0	2201575..2203131	-	518	15603827	leuA	PM1962	-	2-isopropylmalate synthase
1964	 31.25	-2	2203219..2203554	-	111	15603828	-	PM1963	-	hypothetical protein
1965	 35.16	-1	2203645..2204409	-	254	15603829	-	PM1964	-	DNA-bindng transcriptional repressor SrlR
1966	 36.72	-1	2204454..2204837	-	127	15603830	-	PM1965	-	hypothetical protein
1967	 36.84	-1	2204931..2205101	-	56	15603831	-	PM1966	-	hypothetical protein
1968	 34.69	-1	2205180..2205548	-	122	15603832	gutM	PM1967	-	DNA-binding transcriptional activator GutM
1969	 38.97	0	2205659..2206438	-	259	15603833	-	PM1968	-	sorbitol-6-phosphate dehydrogenase
1970	 39.78	0	2206469..2206840	-	123	15603834	-	PM1969	-	glucitol/sorbitol-specific PTS system component IIA
1971	 42.53	0	2206919..2207908	-	329	15603835	-	PM1970	-	hypothetical protein
1972	 39.64	0	2207939..2208493	-	184	15603836	-	PM1971	-	hypothetical protein
1973	 24.07	-2	2208551..2208766	-	71	15603837	-	PM1972	-	hypothetical protein
1974	 45.53	+1	2208818..2209645	-	275	15603838	-	PM1973	-	hypothetical protein
1975	 41.89	0	2209817..2210260	+	147	15603839	-	PM1974	-	hypothetical protein
1976	 41.26	0	2210473..2211771	+	432	15603840	tig	PM1975	-	trigger factor
1977	 42.96	0	2211936..2212517	+	193	15603841	clpP	PM1976	-	ATP-dependent Clp protease proteolytic subunit
1978	 39.89	0	2212533..2213768	+	411	15603842	clpX	PM1977	-	ATP-dependent protease ATP-binding subunit
1979	 42.48	0	2213893..2216307	+	804	15603843	lon	PM1978	-	hypothetical protein
1980	 41.04	0	2216438..2218318	+	626	15603844	-	PM1979	-	hypothetical protein
1981	 44.18	+1	2218391..2219782	-	463	15603845	ibeB	PM1980	-	IbeB
1982	 41.60	0	2219792..2220916	-	374	15603846	-	PM1981	-	hypothetical protein
1983	 44.20	+1	2220918..2223650	-	910	15603847	-	PM1982	-	hypothetical protein
1984	 42.28	0	2223665..2224771	-	368	15603848	-	PM1983	-	hypothetical protein
1985	 41.49	0	2224889..2225611	+	240	161723302	rpsB	PM1984	-	30S ribosomal protein S2
1986	 42.99	0	2225753..2226601	+	282	15603850	tsf	PM1985	-	elongation factor Ts
1987	 43.62	0	2226745..2227473	+	242	15603851	pyrH	PM1986	-	uridylate kinase
1988	 40.32	0	2227549..2228106	+	185	15603852	frr	PM1987	-	ribosome recycling factor
1989	 41.87	0	2228254..2229471	+	405	15603853	dxr	PM1988	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1990	 38.87	0	2229521..2230243	+	240	15603854	-	PM1989	-	hypothetical protein
1991	 40.34	0	2230260..2231129	+	289	15603855	cdsA	PM1990	-	hypothetical protein
1992	 41.23	0	2231151..2232479	+	442	15603856	-	PM1991	-	hypothetical protein
1993	 40.24	0	2232509..2234884	+	791	15603857	-	PM1992	-	hypothetical protein
1994	 37.11	-1	2234993..2235574	+	193	15603858	skp	PM1993	-	Skp
1995	 44.12	+1	2235574..2236602	+	342	15603859	lpxD	PM1994	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
1996	 41.83	0	2236708..2237166	+	152	15603860	fabZ	PM1995	-	FabZ
1997	 44.36	+1	2237184..2237972	+	262	15603861	lpxA	PM1996	-	UDP-N-acetylglucosamine acyltransferase
1998	 41.82	0	2238048..2239226	+	392	15603862	lpxB	PM1997	-	lipid-A-disaccharide synthase
1999	 44.61	+1	2239228..2239821	+	197	15603863	rnhB	PM1998	-	ribonuclease HII
2000	 41.79	0	2239852..2241708	+	618	15603864	-	PM1999	-	hypothetical protein
2001	 43.23	0	2241723..2242379	+	218	15603865	-	PM2000	-	hypothetical protein
2002	 38.25	0	2242390..2243019	+	209	15603866	-	PM2001	-	hypothetical protein
2003	 39.25	0	2243021..2243950	+	309	15603867	-	PM2002	-	hypothetical protein
2004	 45.08	+1	2243976..2244554	+	192	15603868	mogA	PM2003	-	molybdenum cofactor biosynthesis protein
2005	 41.00	0	2244599..2244937	+	112	15603869	glnB	PM2004	-	GlnB
2006	 42.74	0	2244938..2246191	+	417	15603870	-	PM2005	-	hypothetical protein
2007	 34.14	-1	2246309..2248675	+	788	15603871	-	PM2006	-	hypothetical protein
2008	 41.43	0	2248855..2250039	+	394	15603872	-	PM2007	-	hypothetical protein
2009	 36.45	-1	2250078..2250623	+	181	15603873	-	PM2008	-	hypothetical protein
2010	 42.01	0	2250746..2251702	+	318	15603874	-	PM2009	-	hypothetical protein
2011	 45.47	+1	2251729..2252832	+	367	15603875	ispG	PM2010	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
2012	 42.37	0	2252862..2254133	+	423	15603876	hisS	PM2011	-	histidyl-tRNA synthetase
2013	 39.05	0	2254152..2254763	+	203	15603877	-	PM2012	-	hypothetical protein
2014	 42.92	0	2254968..2255405	+	145	15603878	-	PM2013	-	hypothetical protein
2015	 42.21	0	2255517..2257487	-	656	15603879	cpdB	PM2014	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.