IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1878	 40.62	0	2119588..2120232	+	214	15603742	pyrE	PM1877	-	orotate phosphoribosyltransferase
1879	 41.90	0	2120324..2121187	+	287	15603743	djlA	PM1878	-	DNA-J like membrane chaperone protein
1880	 44.01	0	2121187..2121804	+	205	15603744	-	PM1879	-	hypothetical protein
1881	 45.69	+1	2121795..2122733	+	312	15603745	-	PM1880	-	hypothetical protein
1882	 37.80	0	2122733..2123404	+	223	15603746	-	PM1881	-	nucleotidase
1883	 42.83	0	2123553..2124542	-	329	15603747	-	PM1882	-	hypothetical protein
1884	 40.86	0	2124815..2126554	-	579	15603748	-	PM1883	-	hypothetical protein
1885	 39.56	0	2126556..2126780	-	74	15603749	-	PM1884	-	hypothetical protein
1886	 40.90	0	2126921..2127937	+	338	15603750	-	PM1885	-	nucleoid-associated protein NdpA
1887	 40.10	0	2128004..2128417	+	137	15603751	-	PM1886	-	hypothetical protein
1888	 36.75	-1	2128482..2129183	+	233	15603752	cpxR	PM1887	-	CpxR
1889	 39.10	0	2129238..2130641	+	467	15603753	cpxA	PM1888	-	two-component sensor protein
1890	 38.84	0	2130696..2131403	-	235	15603754	-	PM1889	-	hypothetical protein
1891	 38.00	0	2131592..2132062	+	156	15603755	-	PM1890	-	hypothetical protein
1892	 43.19	0	2132147..2132359	+	70	15603756	-	PM1891	-	hypothetical protein
1893	 45.15	+1	2132499..2134673	+	724	15603757	-	PM1892	-	hypothetical protein
1894	 41.41	0	2134822..2135316	-	164	15603758	folA	PM1893	-	hypothetical protein
1895	 44.16	+1	2135353..2135814	-	153	15603759	-	PM1894	-	hypothetical protein
1896	 45.25	+1	2135816..2136604	-	262	15603760	-	PM1895	-	hypothetical protein
1897	 45.83	+1	2136770..2137873	+	367	161723303	proB	PM1896	-	gamma-glutamyl kinase
1898	 44.75	+1	2137897..2138220	+	107	15603762	-	PM1897	-	hypothetical protein
1899	 45.02	+1	2138281..2138913	-	210	15603763	-	PM1898	-	hypothetical protein
1900	 42.91	0	2138938..2139825	-	295	15603764	psd	PM1899	-	phosphatidylserine decarboxylase
1901	 45.27	+1	2139862..2141268	+	468	15603765	bioA	PM1900	-	adenosylmethionine--8-amino-7-oxononanoate transaminase
1902	 44.42	+1	2141265..2142428	+	387	15603766	bioF	PM1901	-	8-amino-7-oxononanoate synthase
1903	 45.22	+1	2142425..2143072	+	215	15603767	-	PM1902	-	hypothetical protein
1904	 44.71	+1	2143076..2143831	+	251	15603768	bioC	PM1903	-	BioC
1905	 40.03	0	2143849..2144490	+	213	15603769	bioD	PM1904	-	dithiobiotin synthetase
1906	 42.16	0	2144620..2145378	+	252	15603770	-	PM1905	-	hypothetical protein
1907	 42.73	0	2145482..2146471	-	329	15603771	oppF	PM1906	-	hypothetical protein
1908	 45.12	+1	2146468..2147460	-	330	15603772	oppD	PM1907	-	oligopeptide transporter ATP-binding component
1909	 42.11	0	2147482..2148393	-	303	15603773	oppC	PM1908	-	hypothetical protein
1910	 42.13	0	2148421..2149341	-	306	15603774	oppB	PM1909	-	oligopeptide transporter permease
1911	 40.32	0	2149439..2151085	-	548	15603775	oppA	PM1910	-	hypothetical protein
1912	 40.95	0	2151377..2151901	+	174	15603776	-	PM1911	-	hypothetical protein
1913	 39.77	0	2151919..2152089	+	56	15603777	rpmF	PM1912	-	50S ribosomal protein L32
1914	 40.71	0	2152149..2153138	+	329	15603778	plsX	PM1913	-	putative glycerol-3-phosphate acyltransferase PlsX
1915	 45.18	+1	2153218..2154171	+	317	15603779	fabH	PM1914	-	3-oxoacyl-(acyl carrier protein) synthase III
1916	 45.58	+1	2154233..2155171	+	312	15603780	fabD	PM1915	-	acyl carrier protein S-malonyltransferase
1917	 41.15	0	2155195..2155923	+	242	15603781	fabG	PM1916	-	3-ketoacyl-(acyl-carrier-protein) reductase
1918	 36.36	-1	2156184..2156414	+	76	15603782	acpP	PM1917	-	acyl carrier protein
1919	 42.64	0	2156643..2157974	+	443	15603783	-	PM1918	-	anaerobic C4-dicarboxylate transporter
1920	 39.49	0	2158088..2158996	+	302	15603784	-	PM1919	-	hypothetical protein
1921	 43.07	0	2159044..2160306	-	420	15603785	rho	PM1920	-	transcription termination factor Rho
1922	 43.08	0	2160520..2161791	+	423	15603786	rhlB	PM1921	-	ATP-dependent RNA helicase RhlB
1923	 40.38	0	2161848..2162159	+	103	15603787	-	PM1922	-	hypothetical protein
1924	 46.58	+1	2162163..2162630	+	155	15603788	-	PM1923	-	SPOUT methyltransferase superfamily protein
1925	 41.19	0	2162643..2164577	+	644	15603789	pbp2	PM1924	-	Pbp2
1926	 43.01	0	2164577..2165692	+	371	15603790	rodA	PM1925	-	RodA
1927	 38.64	0	2165742..2166626	+	294	15603791	-	PM1926	-	hypothetical protein
1928	 38.82	0	2166653..2167837	+	394	15603792	dacA	PM1927	-	DacA
1929	 39.06	0	2167940..2168236	+	98	15603793	-	PM1928	-	hypothetical protein
1930	 41.10	0	2168243..2168899	+	218	15603794	lipB	PM1929	-	lipoyltransferase
1931	 41.33	0	2168964..2169926	+	320	15603795	lipA	PM1930	-	lipoyl synthase
1932	 32.86	-2	2170004..2170423	-	139	15603796	-	PM1931	-	hypothetical protein
1933	 48.15	+2	2170704..2170919	+	71	15603797	-	PM1932	-	hypothetical protein
1934	 44.21	+1	2171066..2171920	+	284	15603798	folD	PM1933	-	hypothetical protein
1935	 35.44	-1	2171936..2172220	+	94	15603799	-	PM1934	-	hypothetical protein
1936	 36.15	-1	2172651..2172863	-	70	15603800	-	PM1935	-	hypothetical protein
1937	 36.25	-1	2172959..2173711	-	250	15603801	-	PM1936	-	hypothetical protein
1938	 41.94	0	2173746..2174291	+	181	15603802	-	PM1937	-	hypothetical protein
1939	 42.76	0	2174564..2176111	-	515	15603803	-	PM1938	-	hypothetical protein
1940	 41.45	0	2176123..2176578	-	151	15603804	-	PM1939	-	hypothetical protein
1941	 42.33	0	2176582..2177292	+	236	15603805	-	PM1940	-	hypothetical protein
1942	 33.33	-2	2177719..2178117	-	132	15603806	-	PM1941	-	hypothetical protein
1943	 39.35	0	2178190..2178804	+	204	15603807	-	PM1942	-	hypothetical protein
1944	 47.69	+2	2178888..2179904	-	338	15603808	-	PM1943	-	hypothetical protein
1945	 43.95	0	2179908..2180312	-	134	15603809	-	PM1944	-	hypothetical protein
1946	 40.77	0	2180657..2181100	+	147	15603810	ycaN	PM1945	-	YcaN
1947	 31.14	-2	2181346..2181756	-	136	15603811	-	PM1946	-	hypothetical protein
1948	 32.60	-2	2181758..2183794	-	678	15603812	-	PM1947	-	hypothetical protein
1949	 32.02	-2	2183797..2185317	-	506	15603813	-	PM1948	-	hypothetical protein
1950	 29.14	-2	2185304..2186590	-	428	15603814	-	PM1949	-	hypothetical protein
1951	 48.30	+2	2186734..2187234	-	166	15603815	ssb	PM1950	-	single-strand DNA-binding protein
1952	 42.44	0	2187406..2190237	+	943	15603816	uvrA	PM1951	-	excinuclease ABC subunit A
1953	 44.74	+1	2190308..2190868	+	186	15603817	sodC	PM1952	-	SodC
1954	 44.99	+1	2190954..2191691	-	245	15603818	-	PM1953	-	23S rRNA (guanosine-2'-O-)-methyltransferase
1955	 42.86	0	2191692..2194094	-	800	15603819	vacB	PM1954	-	hypothetical protein
1956	 45.08	+1	2194366..2195421	+	351	15603820	mreB	PM1955	-	hypothetical protein
1957	 42.10	0	2195500..2196549	+	349	15603821	mreC	PM1956	-	hypothetical protein
1958	 41.10	0	2196549..2197037	+	162	15603822	mreD	PM1957	-	hypothetical protein
1959	 36.89	-1	2197057..2197506	-	149	15603823	-	PM1958	-	hypothetical protein
1960	 41.42	0	2197831..2198436	-	201	15603824	leuD	PM1959	-	isopropylmalate isomerase small subunit
1961	 48.47	+2	2198639..2200045	-	468	15603825	leuC	PM1960	-	isopropylmalate isomerase large subunit
1962	 45.46	+1	2200386..2201465	-	359	15603826	leuB	PM1961	-	3-isopropylmalate dehydrogenase
1963	 43.42	0	2201575..2203131	-	518	15603827	leuA	PM1962	-	2-isopropylmalate synthase
1964	 31.25	-2	2203219..2203554	-	111	15603828	-	PM1963	-	hypothetical protein
1965	 35.16	-1	2203645..2204409	-	254	15603829	-	PM1964	-	DNA-bindng transcriptional repressor SrlR
1966	 36.72	-1	2204454..2204837	-	127	15603830	-	PM1965	-	hypothetical protein
1967	 36.84	-1	2204931..2205101	-	56	15603831	-	PM1966	-	hypothetical protein
1968	 34.69	-1	2205180..2205548	-	122	15603832	gutM	PM1967	-	DNA-binding transcriptional activator GutM
1969	 38.97	0	2205659..2206438	-	259	15603833	-	PM1968	-	sorbitol-6-phosphate dehydrogenase
1970	 39.78	0	2206469..2206840	-	123	15603834	-	PM1969	-	glucitol/sorbitol-specific PTS system component IIA
1971	 42.53	0	2206919..2207908	-	329	15603835	-	PM1970	-	hypothetical protein
1972	 39.64	0	2207939..2208493	-	184	15603836	-	PM1971	-	hypothetical protein
1973	 24.07	-2	2208551..2208766	-	71	15603837	-	PM1972	-	hypothetical protein
1974	 45.53	+1	2208818..2209645	-	275	15603838	-	PM1973	-	hypothetical protein
1975	 41.89	0	2209817..2210260	+	147	15603839	-	PM1974	-	hypothetical protein
1976	 41.26	0	2210473..2211771	+	432	15603840	tig	PM1975	-	trigger factor
1977	 42.96	0	2211936..2212517	+	193	15603841	clpP	PM1976	-	ATP-dependent Clp protease proteolytic subunit
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.