IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1774	 41.37	0	1999648..2000070	+	140	15603638	-	PM1773	-	hypothetical protein
1775	 38.06	0	2000091..2000810	+	239	15603639	-	PM1774	-	hypothetical protein
1776	 36.92	-1	2000803..2001081	+	92	15603640	-	PM1775	-	hypothetical protein
1777	 39.93	0	2001261..2001548	+	95	15603641	-	PM1776	-	hypothetical protein
1778	 37.53	0	2002059..2002487	+	142	15603642	-	PM1777	-	hypothetical protein
1779	 40.82	0	2002577..2003137	+	186	15603643	-	PM1778	-	hypothetical protein
1780	 43.55	0	2003130..2003540	+	136	15603644	-	PM1779	-	hypothetical protein
1781	 40.06	0	2003533..2003859	+	108	15603645	-	PM1780	-	hypothetical protein
1782	 38.39	0	2003856..2004290	+	144	15603646	-	PM1781	-	hypothetical protein
1783	 42.19	0	2004283..2006460	+	725	15603647	-	PM1782	-	hypothetical protein
1784	 30.07	-2	2007544..2008494	+	316	15603648	-	PM1783	-	hypothetical protein
1785	 44.30	+1	2009018..2010403	-	461	15603649	-	PM1784	-	hypothetical protein
1786	 42.55	0	2010413..2010922	-	169	15603650	mobB	PM1785	-	hypothetical protein
1787	 40.51	0	2010973..2011404	-	143	15603651	-	PM1786	-	hypothetical protein
1788	 39.10	0	2011413..2012366	-	317	15603652	rseB	PM1787	-	periplasmic negative regulator of sigmaE
1789	 39.59	0	2012430..2013020	-	196	15603653	mclA	PM1788	-	MclA
1790	 40.45	0	2013067..2013642	-	191	15603654	rpoE	PM1789	-	RNA polymerase sigma factor RpoE
1791	 37.25	-1	2013754..2014008	-	84	15603655	-	PM1790	-	hypothetical protein
1792	 40.11	0	2014284..2016290	+	668	15603656	-	PM1791	-	hypothetical protein
1793	 42.49	0	2016712..2017890	+	392	15603657	-	PM1792	-	hypothetical protein
1794	 43.89	0	2017902..2020373	+	823	15603658	torA	PM1793	-	TorA
1795	 41.79	0	2020370..2020960	+	196	15603659	torD	PM1794	-	chaperone protein TorD
1796	 43.10	0	2021041..2022207	-	388	15603660	fruA	PM1795	-	hypothetical protein
1797	 44.87	+1	2022218..2023153	-	311	15603661	fruK	PM1796	-	1-phosphofructokinase
1798	 42.76	0	2023150..2024295	-	381	15603662	fruB	PM1797	-	bifunctional fructose-specific PTS IIA/HPr protein
1799	 37.21	-1	2024411..2025004	-	197	15603663	-	PM1798	-	hypothetical protein
1800	 46.49	+1	2025035..2025604	-	189	15603664	mobA	PM1799	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1801	 38.95	0	2025669..2025935	+	88	15603665	-	PM1800	-	hypothetical protein
1802	 39.61	0	2025945..2026565	+	206	15603666	dsbA	PM1801	-	DsbA
1803	 40.00	0	2026623..2026952	+	109	15603667	-	PM1802	-	hypothetical protein
1804	 39.89	0	2027039..2028136	+	365	15603668	trmA	PM1803	-	tRNA (uracil-5-)-methyltransferase
1805	 44.80	+1	2028140..2028898	+	252	15603669	-	PM1804	-	hypothetical protein
1806	 38.95	0	2029026..2029559	-	177	15603670	-	PM1805	-	hypothetical protein
1807	 42.92	0	2029743..2031119	+	458	15603671	glmU	PM1806	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
1808	 41.33	0	2031177..2032727	-	516	15603672	-	PM1807	-	hypothetical protein
1809	 42.63	0	2032736..2036638	-	1300	15603673	-	PM1808	-	hypothetical protein
1810	 41.51	0	2036716..2038476	-	586	15603674	-	PM1809	-	hypothetical protein
1811	 40.95	0	2038626..2039255	-	209	15603675	narP	PM1810	-	NarP
1812	 39.53	0	2039271..2041787	-	838	15603676	cyaA	PM1811	-	adenylate cyclase
1813	 45.58	+1	2041930..2042868	+	312	15603677	hemC	PM1812	-	porphobilinogen deaminase
1814	 43.37	0	2042885..2043631	+	248	15603678	hemX	PM1813	-	HemX
1815	 40.24	0	2043672..2045075	+	467	15603679	-	PM1814	-	hypothetical protein
1816	 39.26	0	2045088..2046353	+	421	15603680	hemY	PM1815	-	HemY
1817	 39.47	0	2046448..2046903	-	151	161723305	recX	PM1816	-	recombination regulator RecX
1818	 43.47	0	2047013..2048077	-	354	15603682	recA	PM1817	-	recombinase A
1819	 43.65	0	2048387..2049985	+	532	15603683	-	PM1818	-	hypothetical protein
1820	 42.31	0	2050010..2053084	+	1024	15603684	-	PM1819	-	hypothetical protein
1821	 43.48	0	2053084..2055744	+	886	15603685	-	PM1820	-	hypothetical protein
1822	 44.27	+1	2055763..2056731	+	322	15603686	-	PM1821	-	hypothetical protein
1823	 43.65	0	2056772..2058796	+	674	15603687	ppkA	PM1822	-	PpkA
1824	 46.05	+1	2058815..2059522	+	235	15603688	attE	PM1823	-	AttE
1825	 42.50	0	2059527..2060759	+	410	15603689	-	PM1824	-	hypothetical protein
1826	 42.77	0	2060752..2062287	+	511	15603690	-	PM1825	-	hypothetical protein
1827	 44.67	+1	2062289..2063020	+	243	15603691	-	PM1826	-	hypothetical protein
1828	 42.86	0	2063024..2063506	+	160	15603692	-	PM1827	-	hypothetical protein
1829	 47.16	+1	2063568..2065028	+	486	15603693	-	PM1828	-	hypothetical protein
1830	 44.09	+1	2065041..2066444	+	467	15603694	-	PM1829	-	hypothetical protein
1831	 47.31	+1	2066576..2069158	+	860	15603695	mutS	PM1830	-	DNA mismatch repair protein
1832	 46.12	+1	2069224..2070357	-	377	15603696	anmK	PM1831	-	anhydro-N-acetylmuramic acid kinase
1833	 43.65	0	2070484..2071152	-	222	15603697	-	PM1832	-	hypothetical protein
1834	 41.59	0	2071193..2072572	-	459	15603698	hemN	PM1833	-	coproporphyrinogen III oxidase
1835	 40.56	0	2072584..2073012	-	142	15603699	-	PM1834	-	hypothetical protein
1836	 39.65	0	2073018..2073587	-	189	15603700	-	PM1835	-	hypothetical protein
1837	 47.88	+2	2073651..2074310	-	219	15603701	rsuA_2	PM1836	-	hypothetical protein
1838	 44.04	0	2074391..2077294	-	967	15603702	hepA	PM1837	-	ATP-dependent helicase HepA
1839	 40.57	0	2077572..2078276	+	234	15603703	-	PM1838	-	hypothetical protein
1840	 43.42	0	2078324..2079037	-	237	15603704	-	PM1839	-	hypothetical protein
1841	 44.24	+1	2079149..2080477	+	442	15603705	srmB	PM1840	-	ATP-dependent RNA helicase SrmB
1842	 40.07	0	2081103..2081384	+	93	15603706	-	PM1841	-	hypothetical protein
1843	 40.33	0	2081917..2082159	+	80	15603707	-	PM1842	-	hypothetical protein
1844	 45.86	+1	2083018..2083983	-	321	15603708	-	PM1843	-	ADP-heptose:LPS heptosyl transferase I
1845	 43.94	0	2083980..2085026	-	348	15603709	rfaF	PM1844	-	RfaF
1846	 43.07	0	2085092..2085502	-	136	15603710	-	PM1845	-	hypothetical protein
1847	 43.58	0	2085618..2087042	-	474	15603711	ptsB	PM1846	-	PtsB
1848	 39.31	0	2087271..2088290	-	339	15603712	scrR	PM1847	-	ScrR
1849	 40.93	0	2088316..2089815	-	499	15603713	scrB	PM1848	-	ScrB
1850	 43.47	0	2089796..2090722	-	308	15603714	-	PM1849	-	aminoimidazole riboside kinase
1851	 41.34	0	2090908..2091519	+	203	15603715	-	PM1850	-	hypothetical protein
1852	 39.40	0	2091547..2092914	+	455	15603716	purB	PM1851	-	adenylosuccinate lyase
1853	 39.32	0	2093273..2094859	+	528	15603717	lctP	PM1852	-	LctP
1854	 41.53	0	2094937..2095656	+	239	15603718	-	PM1853	-	hypothetical protein
1855	 42.95	0	2095668..2097071	+	467	15603719	-	PM1854	-	hypothetical protein
1856	 40.94	0	2097089..2097811	+	240	15603720	-	PM1855	-	hypothetical protein
1857	 39.94	0	2097904..2099280	-	458	15603721	pssA	PM1856	-	phosphatidylserine synthase
1858	 45.93	+1	2099446..2100525	+	359	15603722	-	PM1857	-	hypothetical protein
1859	 42.91	0	2100683..2100943	-	86	15603723	-	PM1858	-	hypothetical protein
1860	 38.65	0	2101021..2101716	+	231	15603724	-	PM1859	-	hypothetical protein
1861	 42.61	0	2101833..2102996	+	387	15603725	pgk	PM1860	-	phosphoglycerate kinase
1862	 41.11	0	2103110..2104189	+	359	15603726	fba	PM1861	-	fructose-bisphosphate aldolase
1863	 36.36	-1	2104268..2104729	+	153	15603727	-	PM1862	-	hypothetical protein
1864	 38.76	0	2104745..2105518	+	257	15603728	-	PM1863	-	hypothetical protein
1865	 43.98	0	2105540..2105896	-	118	15603729	dgkA	PM1864	-	hypothetical protein
1866	 42.57	0	2105920..2108139	-	739	15603730	relA	PM1865	-	RelA
1867	 42.09	0	2108148..2109461	-	437	15603731	rumA	PM1866	-	23S rRNA 5-methyluridine methyltransferase
1868	 42.05	0	2109465..2110175	-	236	15603732	recO	PM1867	-	DNA repair protein RecO
1869	 43.27	0	2110367..2111101	+	244	15603733	-	PM1868	-	hypothetical protein
1870	 39.61	0	2111114..2111671	+	185	161723304	-	PM1869	-	hypothetical protein
1871	 45.15	+1	2111671..2112093	+	140	15603735	-	PM1870	-	Holliday junction resolvase-like protein
1872	 42.32	0	2112181..2113482	-	433	15603736	eno	PM1871	-	phosphopyruvate hydratase
1873	 42.97	0	2113667..2115295	-	542	15603737	pyrG	PM1872	-	CTP synthetase
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.