IslandPathversion 1.0

IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 40.66 STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
134	 41.72	0	158500..159465	+	321	15601999	mraW	PM0134	-	S-adenosyl-methyltransferase MraW
135	 37.69	0	159462..159782	+	106	15602000	ftsL	PM0135	-	hypothetical protein
136	 40.53	0	159800..161605	+	601	15602001	ftsI	PM0136	-	hypothetical protein
137	 44.65	+1	161615..163099	+	494	15602002	murE	PM0137	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
138	 41.72	0	163092..164474	+	460	15602003	murF	PM0138	-	hypothetical protein
139	 43.12	0	164468..165550	+	360	15602004	mraY	PM0139	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
140	 42.99	0	165569..166873	+	434	15602005	murD	PM0140	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
141	 40.72	0	166885..168075	+	396	15602006	ftsW	PM0141	-	hypothetical protein
142	 44.69	+1	168153..169217	+	354	15602007	murG	PM0142	-	N-acetylglucosaminyl transferase
143	 44.17	+1	169228..170676	+	482	15602008	murC	PM0143	-	UDP-N-acetylmuramate--L-alanine ligase
144	 41.94	0	170685..171614	+	309	15602009	ddl	PM0144	-	D-alanine--D-alanine ligase
145	 37.84	0	171611..172387	+	258	15602010	ftsQ	PM0145	-	hypothetical protein
146	 38.95	0	172413..173693	+	426	15602011	ftsA	PM0146	-	hypothetical protein
147	 44.06	+1	173778..175082	+	434	15602012	ftsZ	PM0147	-	cell division protein FtsZ
148	 40.74	0	175128..176045	+	305	15602013	lpxC	PM0148	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
149	 42.62	0	176199..177350	+	383	15602014	-	PM0149	-	hypothetical protein
150	 39.09	0	177405..178568	+	387	15602015	pheA	PM0150	-	hypothetical protein
151	 42.01	0	178583..179596	-	337	15602016	rbsR	PM0151	-	RbsR
152	 45.28	+1	179679..180599	-	306	15602017	rbsK	PM0152	-	ribokinase
153	 44.14	+1	180683..181570	-	295	15602018	rbsB_1	PM0153	-	D-ribose transporter subunit RbsB
154	 43.65	0	181598..182566	-	322	15602019	rbsC	PM0154	-	ribose ABC transporter permease protein
155	 41.75	0	182583..184079	-	498	15602020	rbsA_1	PM0155	-	D-ribose transporter ATP binding protein
156	 40.71	0	184091..184510	-	139	15602021	rbsD	PM0156	-	D-ribose pyranase
157	 44.29	+1	184704..184913	+	69	15602022	-	PM0157	-	hypothetical protein
158	 36.94	-1	184961..185293	-	110	15602023	phnA	PM0158	-	PhnA
159	 42.16	0	185436..185990	+	184	15602024	-	PM0159	-	hypothetical protein
160	 45.04	+1	186183..187421	+	412	15602025	-	PM0160	-	allantoate amidohydrolase
161	 44.03	0	187570..188298	-	242	15602026	-	PM0161	-	hypothetical protein
162	 41.68	0	188466..189878	-	470	15602027	arcD	PM0162	-	hypothetical protein
163	 44.41	+1	189964..191055	-	363	15602028	-	PM0163	-	translation-associated GTPase
164	 40.34	0	191089..191673	-	194	15602029	pth	PM0164	-	peptidyl-tRNA hydrolase
165	 41.27	0	191829..192269	+	146	15602030	-	PM0165	-	hypothetical protein
166	 39.67	0	192256..192555	+	99	15602031	-	PM0166	-	hypothetical protein
167	 41.40	0	192567..193805	+	412	15602032	-	PM0167	-	hypothetical protein
168	 43.50	0	193886..195223	+	445	15602033	xseA	PM0168	-	exodeoxyribonuclease VII large subunit
169	 39.10	0	195225..196091	-	288	15602034	-	PM0169	-	hypothetical protein
170	 37.38	0	196120..196638	-	172	15602035	ptsN	PM0170	-	hypothetical protein
171	 41.18	0	196641..197366	-	241	15602036	-	PM0171	-	hypothetical protein
172	 38.79	0	197375..197887	-	170	15602037	-	PM0172	-	hypothetical protein
173	 36.96	-1	197871..198449	-	192	15602038	-	PM0173	-	hypothetical protein
174	 42.14	0	198680..199474	+	264	15602039	-	PM0174	-	hypothetical protein
175	 45.67	+1	199471..200256	+	261	15602040	-	PM0175	-	hypothetical protein
176	 38.66	0	200294..200800	+	168	15602041	-	PM0176	-	hypothetical protein
177	 38.50	0	200845..201483	+	212	15602042	-	PM0177	-	hypothetical protein
178	 40.74	0	201488..201865	+	125	15602043	-	PM0178	-	hypothetical protein
179	 36.43	-1	201847..202104	+	85	15602044	-	PM0179	-	hypothetical protein
180	 43.58	0	202125..203402	+	425	15602045	murZ	PM0180	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
181	 41.22	0	203457..205433	-	658	15602046	rnb	PM0181	-	exoribonuclease II
182	 43.04	0	205494..206276	-	260	15602047	fabI	PM0182	-	FabI
183	 42.20	0	206364..207119	-	251	15602048	-	PM0183	-	hypothetical protein
184	 37.94	0	207357..207986	-	209	15602049	-	PM0184	-	hypothetical protein
185	 38.03	0	207992..208417	-	141	15602050	-	PM0185	-	hypothetical protein
186	 41.48	0	208410..209096	-	228	15602051	-	PM0186	-	hypothetical protein
187	 40.77	0	209243..209914	-	223	15602052	neuA	PM0187	-	NeuA
188	 35.19	-1	209934..211172	-	412	15602053	-	PM0188	-	hypothetical protein
189	 42.36	0	211228..212733	-	501	15602054	lysS	PM0189	-	lysyl-tRNA synthetase
190	 43.41	0	212786..213748	-	320	15602055	prfB	PM0190	-	peptide chain release factor 2
191	 39.62	0	214049..214732	+	227	15602056	dsbC	PM0191	-	DsbC
192	 44.02	0	214795..216516	+	573	15602057	recJ	PM0192	-	hypothetical protein
193	 39.41	0	216518..217192	+	224	15602058	-	PM0193	-	hypothetical protein
194	 44.93	+1	217192..217881	+	229	15602059	pfs	PM0194	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
195	 42.56	0	217973..219457	-	494	15602060	pepA	PM0195	-	leucyl aminopeptidase
196	 40.11	0	219576..220682	+	368	15602061	-	PM0196	-	hypothetical protein
197	 39.78	0	220689..221759	+	356	15602062	-	PM0197	-	hypothetical protein
198	 37.04	-1	222047..222397	-	116	15602063	frdD	PM0198	-	fumarate reductase subunit D
199	 34.34	-1	222412..222810	-	132	15602064	frdC	PM0199	-	fumarate reductase subunit C
200	 41.76	0	222821..223651	-	276	15602065	frdB	PM0200	-	fumarate reductase iron-sulfur subunit
201	 44.33	+1	223584..225383	-	599	15602066	frdA	PM0201	-	fumarate reductase flavoprotein subunit
202	 39.40	0	225736..226707	+	323	15602067	lysU_2	PM0202	-	lysyl-tRNA synthetase
203	 40.82	0	226758..227786	-	342	15602068	-	PM0203	-	hypothetical protein
204	 43.96	0	227888..230494	-	868	15602069	acnB	PM0204	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
205	 41.82	0	230723..231052	+	109	15602070	-	PM0205	-	hypothetical protein
206	 43.12	0	231254..231856	+	200	15602071	recR	PM0206	-	recombination protein RecR
207	 42.65	0	231866..233818	+	650	15602072	topB	PM0207	-	DNA topoisomerase III
208	 38.79	0	234036..234383	+	115	15602073	secG	PM0208	-	preprotein translocase subunit SecG
209	 37.68	0	234604..235155	+	183	15602074	-	PM0209	-	RNA polymerase sigma factor
210	 42.50	0	235423..236142	-	239	15602075	-	PM0210	-	hypothetical protein
211	 41.02	0	236132..237055	-	307	15602076	-	PM0211	-	hypothetical protein
212	 45.95	+1	237117..237449	-	110	15602077	-	PM0212	-	hypothetical protein
213	 40.89	0	237492..237941	-	149	15602078	-	PM0213	-	hypothetical protein
214	 39.29	0	238418..239089	+	223	15602079	ygiX	PM0214	-	YgiX
215	 40.76	0	239076..240449	+	457	15602080	ygiY	PM0215	-	YgiY
216	 38.10	0	240537..240746	+	69	15602081	mopI	PM0216	-	MopI
217	 41.20	0	240798..241280	-	160	15602082	smpB	PM0217	-	SsrA-binding protein
218	 43.61	0	241440..242918	+	492	15602083	-	PM0218	-	hypothetical protein
219	 39.80	0	242967..243677	-	236	15602084	arcA	PM0219	-	two-component response regulator
220	 39.33	0	244065..244331	-	88	15602085	rpmE2	PM0220	-	50S ribosomal protein L31 type B
221	 39.75	0	244510..246270	+	586	15602086	dipZ	PM0221	-	thiol:disulfide interchange protein precursor
222	 43.51	0	246443..248044	+	533	15602087	purH	PM0222	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
223	 36.48	-1	248083..249669	+	528	15602088	dcaA	PM0223	-	DcaA
224	 46.36	+1	249672..250961	+	429	15602089	purD	PM0224	-	phosphoribosylamine--glycine ligase
225	 44.18	+1	251089..252351	+	420	15602090	glyA	PM0225	-	serine hydroxymethyltransferase
226	 40.72	0	252492..253466	-	324	15602091	secF	PM0226	-	preprotein translocase subunit SecF
227	 43.00	0	253474..255324	-	616	15602092	secD	PM0227	-	preprotein translocase subunit SecD
228	 37.04	-1	255350..255646	-	98	15602093	yajC	PM0228	-	preprotein translocase subunit YajC
229	 42.83	0	255944..257101	-	385	15602094	tgt	PM0229	-	queuine tRNA-ribosyltransferase
230	 43.41	0	257316..258665	-	449	15602095	dcuC	PM0230	-	C4-dicarboxylate transporter DcuC
231	 40.61	0	258704..259459	-	251	15602096	-	PM0231	-	hypothetical protein
232	 44.96	+1	259459..260550	-	363	15602097	queA	PM0232	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
233	 43.62	0	260804..262174	-	456	15602098	-	PM0233	-	hypothetical protein
40.66	MEAN

3.39	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.