IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.66   STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1731	 38.27	0	1945617..1946447	+	276	15603595	plpB	PM1730	-	PlpB
1732	 43.15	0	1947165..1948997	-	610	15603596	glmS	PM1731	-	D-fructose-6-phosphate amidotransferase
1733	 41.76	0	1949201..1949473	-	90	15603597	hupA	PM1732	-	hypothetical protein
1734	 38.24	0	1949625..1950215	-	196	15603598	-	PM1733	-	hypothetical protein
1735	 44.41	+1	1950230..1951294	-	354	15603599	uroD	PM1734	-	UroD
1736	 43.77	0	1951291..1952085	-	264	15603600	nudC	PM1735	-	NADH pyrophosphatase
1737	 43.98	0	1952228..1956481	-	1417	15603601	rpoC	PM1736	-	DNA-directed RNA polymerase subunit beta'
1738	 42.52	0	1956592..1960620	-	1342	15603602	rpoB	PM1737	-	DNA-directed RNA polymerase subunit beta
1739	 42.82	0	1960895..1961263	-	122	15603603	rplL	PM1738	-	50S ribosomal protein L7/L12
1740	 42.07	0	1961315..1961806	-	163	15603604	rplJ	PM1739	-	50S ribosomal protein L10
1741	 42.12	0	1962360..1963736	+	458	15603605	gntP	PM1740	-	GntP
1742	 43.63	0	1963749..1964894	+	381	15603606	-	PM1741	-	hypothetical protein
1743	 40.87	0	1964961..1965650	-	229	15603607	rplA	PM1742	-	50S ribosomal protein L1
1744	 41.03	0	1965655..1966083	-	142	15603608	rplK	PM1743	-	50S ribosomal protein L11
1745	 40.04	0	1966243..1966794	-	183	15603609	nusG	PM1744	-	transcription antitermination protein NusG
1746	 37.23	-1	1966796..1967206	-	136	15603610	secE	PM1745	-	preprotein translocase subunit SecE
1747	 44.47	+1	1967465..1968649	-	394	15603611	tuf	PM1746	-	elongation factor Tu
1748	 37.64	0	1969367..1970317	+	316	15603612	coaA	PM1747	-	pantothenate kinase
1749	 43.77	0	1970398..1971729	-	443	15603613	hslU	PM1748	-	ATP-dependent protease ATP-binding subunit
1750	 42.75	0	1971745..1972275	-	176	15603614	hslV	PM1749	-	ATP-dependent protease peptidase subunit
1751	 35.77	-1	1972519..1973256	-	245	15603615	-	PM1750	-	hypothetical protein
1752	 41.35	0	1973355..1974227	-	290	15603616	ubiA	PM1751	-	4-hydroxybenzoate octaprenyltransferase
1753	 41.54	0	1974589..1975941	+	450	15603617	ptsG	PM1752	-	hypothetical protein
1754	 40.69	0	1976085..1976804	+	239	15603618	-	PM1753	-	hypothetical protein
1755	 42.77	0	1976957..1979488	+	843	15603619	dmsA	PM1754	-	DmsA
1756	 42.83	0	1979499..1980119	+	206	15603620	dmsB	PM1755	-	DmsB
1757	 41.46	0	1980121..1980969	+	282	15603621	dmsC	PM1756	-	DmsC
1758	 40.76	0	1981058..1981663	+	201	15603622	-	PM1757	-	twin-argninine leader-binding protein DmsD
1759	 42.67	0	1981681..1982226	+	181	15603623	-	PM1758	-	hypothetical protein
1760	 41.12	0	1982349..1983452	-	367	15603624	-	PM1759	-	hypothetical protein
1761	 37.89	0	1983485..1984318	-	277	15603625	-	PM1760	-	hypothetical protein
1762	 37.40	0	1984320..1985204	-	294	15603626	-	PM1761	-	hypothetical protein
1763	 38.57	0	1985323..1986678	-	451	15603627	-	PM1762	-	hypothetical protein
1764	 36.95	-1	1986723..1987829	-	368	15603628	-	PM1763	-	hypothetical protein
1765	 36.86	-1	1988017..1988724	+	235	15603629	gntR_1	PM1764	-	hypothetical protein
1766	 40.37	0	1988717..1989796	+	359	15603630	-	PM1765	-	hypothetical protein
1767	 42.19	0	1989826..1991700	-	624	15603631	selB	PM1766	-	hypothetical protein
1768	 41.69	0	1991928..1992860	+	310	15603632	iunH	PM1767	-	IunH
1769	 43.02	0	1992896..1994278	-	460	15603633	selA	PM1768	-	selenocysteine synthase
1770	 41.87	0	1994906..1996159	+	417	15603634	slpA	PM1769	-	hypothetical protein
1771	 34.55	-1	1996331..1997479	+	382	15603635	-	PM1770	-	hypothetical protein
1772	 27.91	-2	1998080..1999222	+	380	15603636	-	PM1771	-	hypothetical protein
1773	 38.89	0	1999441..1999638	+	65	15603637	-	PM1772	-	hypothetical protein
1774	 41.37	0	1999648..2000070	+	140	15603638	-	PM1773	-	hypothetical protein
1775	 38.06	0	2000091..2000810	+	239	15603639	-	PM1774	-	hypothetical protein
1776	 36.92	-1	2000803..2001081	+	92	15603640	-	PM1775	-	hypothetical protein
1777	 39.93	0	2001261..2001548	+	95	15603641	-	PM1776	-	hypothetical protein
1778	 37.53	0	2002059..2002487	+	142	15603642	-	PM1777	-	hypothetical protein
1779	 40.82	0	2002577..2003137	+	186	15603643	-	PM1778	-	hypothetical protein
1780	 43.55	0	2003130..2003540	+	136	15603644	-	PM1779	-	hypothetical protein
1781	 40.06	0	2003533..2003859	+	108	15603645	-	PM1780	-	hypothetical protein
1782	 38.39	0	2003856..2004290	+	144	15603646	-	PM1781	-	hypothetical protein
1783	 42.19	0	2004283..2006460	+	725	15603647	-	PM1782	-	hypothetical protein
1784	 30.07	-2	2007544..2008494	+	316	15603648	-	PM1783	-	hypothetical protein
1785	 44.30	+1	2009018..2010403	-	461	15603649	-	PM1784	-	hypothetical protein
1786	 42.55	0	2010413..2010922	-	169	15603650	mobB	PM1785	-	hypothetical protein
1787	 40.51	0	2010973..2011404	-	143	15603651	-	PM1786	-	hypothetical protein
1788	 39.10	0	2011413..2012366	-	317	15603652	rseB	PM1787	-	periplasmic negative regulator of sigmaE
1789	 39.59	0	2012430..2013020	-	196	15603653	mclA	PM1788	-	MclA
1790	 40.45	0	2013067..2013642	-	191	15603654	rpoE	PM1789	-	RNA polymerase sigma factor RpoE
1791	 37.25	-1	2013754..2014008	-	84	15603655	-	PM1790	-	hypothetical protein
1792	 40.11	0	2014284..2016290	+	668	15603656	-	PM1791	-	hypothetical protein
1793	 42.49	0	2016712..2017890	+	392	15603657	-	PM1792	-	hypothetical protein
1794	 43.89	0	2017902..2020373	+	823	15603658	torA	PM1793	-	TorA
1795	 41.79	0	2020370..2020960	+	196	15603659	torD	PM1794	-	chaperone protein TorD
1796	 43.10	0	2021041..2022207	-	388	15603660	fruA	PM1795	-	hypothetical protein
1797	 44.87	+1	2022218..2023153	-	311	15603661	fruK	PM1796	-	1-phosphofructokinase
1798	 42.76	0	2023150..2024295	-	381	15603662	fruB	PM1797	-	bifunctional fructose-specific PTS IIA/HPr protein
1799	 37.21	-1	2024411..2025004	-	197	15603663	-	PM1798	-	hypothetical protein
1800	 46.49	+1	2025035..2025604	-	189	15603664	mobA	PM1799	-	molybdopterin-guanine dinucleotide biosynthesis protein A
1801	 38.95	0	2025669..2025935	+	88	15603665	-	PM1800	-	hypothetical protein
1802	 39.61	0	2025945..2026565	+	206	15603666	dsbA	PM1801	-	DsbA
1803	 40.00	0	2026623..2026952	+	109	15603667	-	PM1802	-	hypothetical protein
1804	 39.89	0	2027039..2028136	+	365	15603668	trmA	PM1803	-	tRNA (uracil-5-)-methyltransferase
1805	 44.80	+1	2028140..2028898	+	252	15603669	-	PM1804	-	hypothetical protein
1806	 38.95	0	2029026..2029559	-	177	15603670	-	PM1805	-	hypothetical protein
1807	 42.92	0	2029743..2031119	+	458	15603671	glmU	PM1806	-	bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase
1808	 41.33	0	2031177..2032727	-	516	15603672	-	PM1807	-	hypothetical protein
1809	 42.63	0	2032736..2036638	-	1300	15603673	-	PM1808	-	hypothetical protein
1810	 41.51	0	2036716..2038476	-	586	15603674	-	PM1809	-	hypothetical protein
1811	 40.95	0	2038626..2039255	-	209	15603675	narP	PM1810	-	NarP
1812	 39.53	0	2039271..2041787	-	838	15603676	cyaA	PM1811	-	adenylate cyclase
1813	 45.58	+1	2041930..2042868	+	312	15603677	hemC	PM1812	-	porphobilinogen deaminase
1814	 43.37	0	2042885..2043631	+	248	15603678	hemX	PM1813	-	HemX
1815	 40.24	0	2043672..2045075	+	467	15603679	-	PM1814	-	hypothetical protein
1816	 39.26	0	2045088..2046353	+	421	15603680	hemY	PM1815	-	HemY
1817	 39.47	0	2046448..2046903	-	151	161723305	recX	PM1816	-	recombination regulator RecX
1818	 43.47	0	2047013..2048077	-	354	15603682	recA	PM1817	-	recombinase A
1819	 43.65	0	2048387..2049985	+	532	15603683	-	PM1818	-	hypothetical protein
1820	 42.31	0	2050010..2053084	+	1024	15603684	-	PM1819	-	hypothetical protein
1821	 43.48	0	2053084..2055744	+	886	15603685	-	PM1820	-	hypothetical protein
1822	 44.27	+1	2055763..2056731	+	322	15603686	-	PM1821	-	hypothetical protein
1823	 43.65	0	2056772..2058796	+	674	15603687	ppkA	PM1822	-	PpkA
1824	 46.05	+1	2058815..2059522	+	235	15603688	attE	PM1823	-	AttE
1825	 42.50	0	2059527..2060759	+	410	15603689	-	PM1824	-	hypothetical protein
1826	 42.77	0	2060752..2062287	+	511	15603690	-	PM1825	-	hypothetical protein
1827	 44.67	+1	2062289..2063020	+	243	15603691	-	PM1826	-	hypothetical protein
1828	 42.86	0	2063024..2063506	+	160	15603692	-	PM1827	-	hypothetical protein
1829	 47.16	+1	2063568..2065028	+	486	15603693	-	PM1828	-	hypothetical protein
1830	 44.09	+1	2065041..2066444	+	467	15603694	-	PM1829	-	hypothetical protein
40.66	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.