IslandPath Analysis: Pasteurella multocida subsp. multocida str. Pm70



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 40.66   STD DEV: 3.39
Pasteurella multocida subsp. multocida str. Pm70, complete genome - 1..2257487
2015 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1691	 42.53	0	1898834..1899409	+	191	15603555	-	PM1690	-	sec-independent translocase
1692	 43.36	0	1899409..1900146	+	245	15603556	tatC	PM1691	-	hypothetical protein
1693	 43.08	0	1900218..1901243	+	341	15603557	hemB	PM1692	-	delta-aminolevulinic acid dehydratase
1694	 44.62	+1	1901319..1902266	-	315	15603558	cysK	PM1693	-	hypothetical protein
1695	 38.43	0	1902376..1903179	-	267	15603559	cysZ	PM1694	-	putative sulfate transport protein CysZ
1696	 40.95	0	1903351..1904322	+	323	15603560	zipA	PM1695	-	cell division protein ZipA
1697	 43.23	0	1904378..1904983	-	201	15603561	-	PM1696	-	putative glycerol-3-phosphate acyltransferase PlsY
1698	 41.18	0	1905089..1905445	+	118	15603562	folB	PM1697	-	hypothetical protein
1699	 40.84	0	1905442..1906347	+	301	15603563	-	PM1698	-	hypothetical protein
1700	 40.19	0	1906369..1906791	-	140	15603564	-	PM1699	-	hypothetical protein
1701	 43.18	0	1906814..1907524	-	236	15603565	-	PM1700	-	hypothetical protein
1702	 41.22	0	1907534..1908421	-	295	15603566	xerC	PM1701	-	site-specific tyrosine recombinase XerC
1703	 40.20	0	1908463..1909161	-	232	15603567	-	PM1702	-	hypothetical protein
1704	 43.64	0	1909688..1910512	-	274	15603568	dapF	PM1703	-	diaminopimelate epimerase
1705	 43.81	0	1910791..1913358	+	855	15603569	clpB	PM1704	-	ClpB
1706	 39.20	0	1913515..1913889	+	124	15603570	trx	PM1705	-	Trx
1707	 44.86	+1	1913905..1914633	+	242	15603571	dsbD_2	PM1706	-	DsbD
1708	 41.56	0	1914725..1915867	-	380	15603572	-	PM1707	-	hypothetical protein
1709	 39.16	0	1915996..1917900	-	634	15603573	-	PM1708	-	hypothetical protein
1710	 37.30	0	1917948..1918931	-	327	15603574	-	PM1709	-	hypothetical protein
1711	 40.00	0	1919175..1919789	+	204	15603575	-	PM1710	-	hypothetical protein
1712	 45.71	+1	1919956..1920642	+	228	15603576	-	PM1711	-	N-acetylmannosamine-6-phosphate 2-epimerase
1713	 45.86	+1	1920664..1921557	+	297	15603577	-	PM1712	-	N-acetylmannosamine kinase
1714	 36.97	-1	1921567..1922034	+	155	15603578	-	PM1713	-	hypothetical protein
1715	 38.87	0	1922061..1922927	+	288	15603579	-	PM1714	-	hypothetical protein
1716	 39.12	0	1922948..1923829	+	293	15603580	nanA	PM1715	-	N-acetylneuraminate lyase
1717	 44.61	+1	1923922..1925943	-	673	15603581	ligA	PM1716	-	NAD-dependent DNA ligase LigA
1718	 40.74	0	1926140..1928692	+	850	15603582	-	PM1717	-	hypothetical protein
1719	 42.45	0	1928776..1929510	-	244	15603583	-	PM1718	-	hypothetical protein
1720	 44.10	+1	1929522..1930496	-	324	15603584	rluD	PM1719	-	23S rRNA pseudouridine synthase D
1721	 40.10	0	1930602..1931384	+	260	15603585	-	PM1720	-	hypothetical protein
1722	 40.66	0	1931440..1932012	-	190	15603586	-	PM1721	-	hypothetical protein
1723	 37.95	0	1932292..1932594	-	100	15603587	-	PM1722	-	hypothetical protein
1724	 41.17	0	1932738..1933286	+	182	15603588	-	PM1723	-	hypothetical protein
1725	 40.72	0	1933310..1934635	+	441	15603589	pepP	PM1724	-	hypothetical protein
1726	 43.78	0	1934647..1935852	+	401	15603590	-	PM1725	-	hypothetical protein
1727	 42.56	0	1935855..1937024	+	389	15603591	visC	PM1726	-	VisC
1728	 37.48	0	1943110..1943664	-	184	15603592	-	PM1727	-	D,D-heptose 1,7-bisphosphate phosphatase
1729	 38.55	0	1943857..1944891	+	344	15603593	metN	PM1728	-	DL-methionine transporter ATP-binding subunit
1730	 40.00	0	1944884..1945573	+	229	15603594	-	PM1729	-	hypothetical protein
1731	 38.27	0	1945617..1946447	+	276	15603595	plpB	PM1730	-	PlpB
1732	 43.15	0	1947165..1948997	-	610	15603596	glmS	PM1731	-	D-fructose-6-phosphate amidotransferase
1733	 41.76	0	1949201..1949473	-	90	15603597	hupA	PM1732	-	hypothetical protein
1734	 38.24	0	1949625..1950215	-	196	15603598	-	PM1733	-	hypothetical protein
1735	 44.41	+1	1950230..1951294	-	354	15603599	uroD	PM1734	-	UroD
1736	 43.77	0	1951291..1952085	-	264	15603600	nudC	PM1735	-	NADH pyrophosphatase
1737	 43.98	0	1952228..1956481	-	1417	15603601	rpoC	PM1736	-	DNA-directed RNA polymerase subunit beta'
1738	 42.52	0	1956592..1960620	-	1342	15603602	rpoB	PM1737	-	DNA-directed RNA polymerase subunit beta
1739	 42.82	0	1960895..1961263	-	122	15603603	rplL	PM1738	-	50S ribosomal protein L7/L12
1740	 42.07	0	1961315..1961806	-	163	15603604	rplJ	PM1739	-	50S ribosomal protein L10
1741	 42.12	0	1962360..1963736	+	458	15603605	gntP	PM1740	-	GntP
1742	 43.63	0	1963749..1964894	+	381	15603606	-	PM1741	-	hypothetical protein
1743	 40.87	0	1964961..1965650	-	229	15603607	rplA	PM1742	-	50S ribosomal protein L1
1744	 41.03	0	1965655..1966083	-	142	15603608	rplK	PM1743	-	50S ribosomal protein L11
1745	 40.04	0	1966243..1966794	-	183	15603609	nusG	PM1744	-	transcription antitermination protein NusG
1746	 37.23	-1	1966796..1967206	-	136	15603610	secE	PM1745	-	preprotein translocase subunit SecE
1747	 44.47	+1	1967465..1968649	-	394	15603611	tuf	PM1746	-	elongation factor Tu
1748	 37.64	0	1969367..1970317	+	316	15603612	coaA	PM1747	-	pantothenate kinase
1749	 43.77	0	1970398..1971729	-	443	15603613	hslU	PM1748	-	ATP-dependent protease ATP-binding subunit
1750	 42.75	0	1971745..1972275	-	176	15603614	hslV	PM1749	-	ATP-dependent protease peptidase subunit
1751	 35.77	-1	1972519..1973256	-	245	15603615	-	PM1750	-	hypothetical protein
1752	 41.35	0	1973355..1974227	-	290	15603616	ubiA	PM1751	-	4-hydroxybenzoate octaprenyltransferase
1753	 41.54	0	1974589..1975941	+	450	15603617	ptsG	PM1752	-	hypothetical protein
1754	 40.69	0	1976085..1976804	+	239	15603618	-	PM1753	-	hypothetical protein
1755	 42.77	0	1976957..1979488	+	843	15603619	dmsA	PM1754	-	DmsA
1756	 42.83	0	1979499..1980119	+	206	15603620	dmsB	PM1755	-	DmsB
1757	 41.46	0	1980121..1980969	+	282	15603621	dmsC	PM1756	-	DmsC
1758	 40.76	0	1981058..1981663	+	201	15603622	-	PM1757	-	twin-argninine leader-binding protein DmsD
1759	 42.67	0	1981681..1982226	+	181	15603623	-	PM1758	-	hypothetical protein
1760	 41.12	0	1982349..1983452	-	367	15603624	-	PM1759	-	hypothetical protein
1761	 37.89	0	1983485..1984318	-	277	15603625	-	PM1760	-	hypothetical protein
1762	 37.40	0	1984320..1985204	-	294	15603626	-	PM1761	-	hypothetical protein
1763	 38.57	0	1985323..1986678	-	451	15603627	-	PM1762	-	hypothetical protein
1764	 36.95	-1	1986723..1987829	-	368	15603628	-	PM1763	-	hypothetical protein
1765	 36.86	-1	1988017..1988724	+	235	15603629	gntR_1	PM1764	-	hypothetical protein
1766	 40.37	0	1988717..1989796	+	359	15603630	-	PM1765	-	hypothetical protein
1767	 42.19	0	1989826..1991700	-	624	15603631	selB	PM1766	-	hypothetical protein
1768	 41.69	0	1991928..1992860	+	310	15603632	iunH	PM1767	-	IunH
1769	 43.02	0	1992896..1994278	-	460	15603633	selA	PM1768	-	selenocysteine synthase
1770	 41.87	0	1994906..1996159	+	417	15603634	slpA	PM1769	-	hypothetical protein
1771	 34.55	-1	1996331..1997479	+	382	15603635	-	PM1770	-	hypothetical protein
1772	 27.91	-2	1998080..1999222	+	380	15603636	-	PM1771	-	hypothetical protein
1773	 38.89	0	1999441..1999638	+	65	15603637	-	PM1772	-	hypothetical protein
1774	 41.37	0	1999648..2000070	+	140	15603638	-	PM1773	-	hypothetical protein
1775	 38.06	0	2000091..2000810	+	239	15603639	-	PM1774	-	hypothetical protein
1776	 36.92	-1	2000803..2001081	+	92	15603640	-	PM1775	-	hypothetical protein
1777	 39.93	0	2001261..2001548	+	95	15603641	-	PM1776	-	hypothetical protein
1778	 37.53	0	2002059..2002487	+	142	15603642	-	PM1777	-	hypothetical protein
1779	 40.82	0	2002577..2003137	+	186	15603643	-	PM1778	-	hypothetical protein
1780	 43.55	0	2003130..2003540	+	136	15603644	-	PM1779	-	hypothetical protein
1781	 40.06	0	2003533..2003859	+	108	15603645	-	PM1780	-	hypothetical protein
1782	 38.39	0	2003856..2004290	+	144	15603646	-	PM1781	-	hypothetical protein
1783	 42.19	0	2004283..2006460	+	725	15603647	-	PM1782	-	hypothetical protein
1784	 30.07	-2	2007544..2008494	+	316	15603648	-	PM1783	-	hypothetical protein
1785	 44.30	+1	2009018..2010403	-	461	15603649	-	PM1784	-	hypothetical protein
1786	 42.55	0	2010413..2010922	-	169	15603650	mobB	PM1785	-	hypothetical protein
1787	 40.51	0	2010973..2011404	-	143	15603651	-	PM1786	-	hypothetical protein
1788	 39.10	0	2011413..2012366	-	317	15603652	rseB	PM1787	-	periplasmic negative regulator of sigmaE
1789	 39.59	0	2012430..2013020	-	196	15603653	mclA	PM1788	-	MclA
1790	 40.45	0	2013067..2013642	-	191	15603654	rpoE	PM1789	-	RNA polymerase sigma factor RpoE
40.66	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.